rna197, rna197 (mRNA) Nannochloropsis gaditana

Overview
Namerna197
Unique Namerna197
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1233
Alignment locationCM002455.1:514651..515757 +

Link to JBrowse

Properties
Property NameValue
Producttrna-specific adenosine deaminase
Orig transcript idgnl|cribi|Naga_100013g20.9772.mrna
Orig protein idgnl|cribi|Naga_100013g20.9772
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:514651..515757 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100013g20gene188Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna197rna197-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30484.1cds197Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna197 ID=rna197|Name=rna197|organism=Nannochloropsis gaditana|type=mRNA|length=1233bp
ATGGTGTTGCAAAATGCTCCCGATACTATCCTACATAGCTTAAAGGCAAG
CCTTTCTGCTCAAATCAGCAACCAAAGGTCATCTGAAGAGACACATTATG
CTGGTTTTCAGGAAGCGACTTCAAATTTGGCAGCACCCGAAGCAGTAGCG
ACAGAACTTGTGAGCGAAACCTTGGCAGTTAGATCATCGTTTGATGTCGC
GAGAAAAGGGGGCGCGCTCCAGGAATTTGGCGATTTCTACGACATTTCTT
CTTGGGAAAAATACTTGGAGGTGATGCCAATGCATGAATACTTGAAGAAA
GAAGGACTGACTGGAGGCCTGAAGAATAAAGAGAGGCCGCCGGGGAATGC
CACTACGTTTGACCGCCAAAAAACGTTATGGGATTACATTCGACGGGCAA
CAGATGTATTTCCTGTTGGGCCCGATGCCCACGTCGTCGCTTTCGGACTC
CCAGCGCATGTCAATACCTCAAAGGCTCTGCATGAATATCATCCCGAAGC
AGATGCCATTATCGACGGACGAAATCTACTGTGCTATGGCTCTGACTTGC
ACGCTAGAAAATCGCTGCATTTCACATCCATGTACAACGGAGGAAAACGT
TATTTGGCTCATTTTTACGGATTTTTGTATTTTGCAGACCAAAAGGTTGA
CGCTTTCATGAAACGCTTTGTCCGCGATCACATGCATTATCGAAATGACA
TATTTTGCCGCGCTACAAAGGTGATCGATTTGTTGAGGAGGAATGCAAGT
GATAAAAACGGAGGGTACGATGCCATACATATCCGACGAGGGGACTTCCA
ATTTAAAGAGGCGCGCCTCGACATAGAAGATATTTTTAAAGCAGTGGAGG
ATGTAATTGATCCTGGGTCACTAGTGTACATAGTAACGGATGAAAAGAAC
TCAACGCTTTTCGACCCTGTACGTGATCTGTACCGTCTCCGGTTTTACGA
AGACTTTTACAAGGCGGCTGGATTGGAAGATATGGATCCCAACCTTACGG
GTATGGTAGAGCAAATAATCGCCTCAGGGGCGCGTACGTTCGTGGGCACC
TACTTTTCCACGTTTACCGCCTTCATCACACGTATGAGGGGTTATCTTGG
AAGGAATCCAGGGTTCTATTATCTTGAAAAGTTCAAATATGCCTTGCAGT
CCCCAGGCAAAAATTTCTACGCGTCAGGAGCGAATTTCGTCCGAGAGTGG
CCGGTTGCATACACTAATTTAGACTTAGCATGA
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protein sequence of rna197

>rna197-protein ID=rna197-protein|Name=rna197|organism=Nannochloropsis gaditana|type=polypeptide|length=238bp
MIRGKALQPRSVTFLALLSLLCPILLPTHAFLHTCRLSSPHARSFAVNSI
STSASLRENQDEKYMALALIEAQAAFAAKEVPVGAVLVSSEGQVLATGRN
RVEATGDASAHAELECLRAAALGAARHGQGKWRMLNCTLYVTLEPCLMCL
GAVQSFRVQRVVYGARSTLLGAIESYVKVLEQAPHPFHSTLEVKGGVHAA
QCGDLMKRFFAERRLESERMATKVREAQREEKRFDTVT
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mRNA from alignment at CM002455.1:514651..515757+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna197 ID=rna197|Name=rna197|organism=Nannochloropsis gaditana|type=mRNA|length=1107bp|location=Sequence derived from alignment at CM002455.1:514651..515757+ (Nannochloropsis gaditana)
AGTGCCCCTTCGTTCGCGGCGGCAACCCGCCACGGCAGCATATGCGCTCT
TTACGGCAACAATGAAAAGTACTTACACTTACAAACACAGCGAAAGGCTA
CGCGCTGAGCAGGTGGCAGTATGATTCGTGGAAAAGCCCTACAGCCACGA
AGCGTGACTTTCTTGGCCTTACTGTCTCTGCTGTGCCCGATCCTGCTCCC
TACGCATGCTTTTCTCCACACCTGTCGATTGTCTTCTCCCCACGCACGAA
GCTTTGCTGTCAATAGTATATCTACTTCCGCATCTTTGAGGGAAAATCAA
GATGAAAAATATATGGCCTTGGCGCTAATTGAGGCTCAGGCGGCTTTCGC
AGCCAAAGAAGTTCCAGTTGgcgccgtcctcgtctcgAGTGAGGGTCAAG
TCCTTGCGACAGGGCGCAATCGAGTGGAAGCCACAGGAGACGCAAGTGCA
CACGCTGAATTAGAATGTCTGAGAGCAGCCGCGCTTGGTGCAGCTCGCCA
CGGCCAAGGTAAATGGCGTATGTTAAATTGTACGCTGTACGTGACATTAG
AGCCATGCTTAATGTGTTTGGGCGCGGTGCAAAGCTTTCGGGTTCAACGC
GTGGTGTATGGAGCACGTAGTACATTACTTGGAGCCATTGAGAGCTATGT
GAAGGTATTGGAGCAGGCACCGCATCCGTTTCATTCCACTCTAGAGGTCA
AAGGAGGGGTCCATGCGGCGCAATGTGGTGATTTGATGAAGAGATTTTTC
GCAGAGCGTCGGCTTGAAAGCGAGAGAATGGCGACAAAGGTGCGCGAGGc
acagagagaggagaaaagattTGATACTGTAACATAGCGATTGTTCATTA
AATTCGAGGTGATGTAAATATATACAAAAGTAGCGGCCAATGTGTCACAC
ACGAGGGCCGAGTTAAGTTGTGCTTATTGTGGTGTCATTTCTCATgattt
cctctctcctcaccATATGTGGAAATAAGAGAGCATTGCATCACAAGCCT
TCCACAGAAAACTTGATTGAAGGTCTCTCGCCTCCCTGGCAGCTCTTGTC
ACTGTCTCACCCACCCCGCACGTCAGCAGACTGAGAAGAAGCGAAGAGCA
TGCACAA
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Coding sequence (CDS) from alignment at CM002455.1:514651..515757+

>rna197 ID=rna197|Name=rna197|organism=Nannochloropsis gaditana|type=CDS|length=717bp|location=Sequence derived from alignment at CM002455.1:514651..515757+ (Nannochloropsis gaditana)
ATGATTCGTGGAAAAGCCCTACAGCCACGAAGCGTGACTTTCTTGGCCTT
ACTGTCTCTGCTGTGCCCGATCCTGCTCCCTACGCATGCTTTTCTCCACA
CCTGTCGATTGTCTTCTCCCCACGCACGAAGCTTTGCTGTCAATAGTATA
TCTACTTCCGCATCTTTGAGGGAAAATCAAGATGAAAAATATATGGCCTT
GGCGCTAATTGAGGCTCAGGCGGCTTTCGCAGCCAAAGAAGTTCCAGTTG
gcgccgtcctcgtctcgAGTGAGGGTCAAGTCCTTGCGACAGGGCGCAAT
CGAGTGGAAGCCACAGGAGACGCAAGTGCACACGCTGAATTAGAATGTCT
GAGAGCAGCCGCGCTTGGTGCAGCTCGCCACGGCCAAGGTAAATGGCGTA
TGTTAAATTGTACGCTGTACGTGACATTAGAGCCATGCTTAATGTGTTTG
GGCGCGGTGCAAAGCTTTCGGGTTCAACGCGTGGTGTATGGAGCACGTAG
TACATTACTTGGAGCCATTGAGAGCTATGTGAAGGTATTGGAGCAGGCAC
CGCATCCGTTTCATTCCACTCTAGAGGTCAAAGGAGGGGTCCATGCGGCG
CAATGTGGTGATTTGATGAAGAGATTTTTCGCAGAGCGTCGGCTTGAAAG
CGAGAGAATGGCGACAAAGGTGCGCGAGGcacagagagaggagaaaagat
tTGATACTGTAACATAG
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Synonyms
Publications