EWM30484.1, cds197 (CDS) Nannochloropsis gaditana

Overview
NameEWM30484.1
Unique Namecds197
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:514771..515487 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM30484.1
Producttrna-specific adenosine deaminase
Orig transcript idgnl|cribi|Naga_100013g20.9772.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:514771..515487 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0002100tRNA wobble adenosine to inosine editing
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0003824catalytic activity
GO:0008251tRNA-specific adenosine deaminase activity
GO:0016787hydrolase activity
GO:0008270zinc ion binding
Vocabulary: INTERPRO
TermDefinition
IPR016193Cytidine_deaminase-like
IPR028883tRNA_aden_deaminase
IPR002125CMP_dCMP_Zn-bd
Homology
BLAST of EWM30484.1 vs. NCBI_GenBank
Match: gi|585113148|gb|EWM30484.1| (trna-specific adenosine deaminase [Nannochloropsis gaditana])

HSP 1 Score: 485.337 bits (1248), Expect = 1.886e-173
Identity = 238/238 (100.00%), Postives = 238/238 (100.00%), Query Frame = 0
Query:    1 MIRGKALQPRSVTFLALLSLLCPILLPTHAFLHTCRLSSPHARSFAVNSISTSASLRENQDEKYMALALIEAQAAFAAKEVPVGAVLVSSEGQVLATGRNRVEATGDASAHAELECLRAAALGAARHGQGKWRMLNCTLYVTLEPCLMCLGAVQSFRVQRVVYGARSTLLGAIESYVKVLEQAPHPFHSTLEVKGGVHAAQCGDLMKRFFAERRLESERMATKVREAQREEKRFDTVT 238
            MIRGKALQPRSVTFLALLSLLCPILLPTHAFLHTCRLSSPHARSFAVNSISTSASLRENQDEKYMALALIEAQAAFAAKEVPVGAVLVSSEGQVLATGRNRVEATGDASAHAELECLRAAALGAARHGQGKWRMLNCTLYVTLEPCLMCLGAVQSFRVQRVVYGARSTLLGAIESYVKVLEQAPHPFHSTLEVKGGVHAAQCGDLMKRFFAERRLESERMATKVREAQREEKRFDTVT
Sbjct:    1 MIRGKALQPRSVTFLALLSLLCPILLPTHAFLHTCRLSSPHARSFAVNSISTSASLRENQDEKYMALALIEAQAAFAAKEVPVGAVLVSSEGQVLATGRNRVEATGDASAHAELECLRAAALGAARHGQGKWRMLNCTLYVTLEPCLMCLGAVQSFRVQRVVYGARSTLLGAIESYVKVLEQAPHPFHSTLEVKGGVHAAQCGDLMKRFFAERRLESERMATKVREAQREEKRFDTVT 238          
BLAST of EWM30484.1 vs. NCBI_GenBank
Match: gi|553195793|ref|XP_005856209.1| (trna-specific adenosine deaminase [Nannochloropsis gaditana CCMP526] >gi|422292857|gb|EKU20159.1| trna-specific adenosine deaminase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 481.485 bits (1238), Expect = 6.972e-172
Identity = 237/238 (99.58%), Postives = 237/238 (99.58%), Query Frame = 0
Query:    1 MIRGKALQPRSVTFLALLSLLCPILLPTHAFLHTCRLSSPHARSFAVNSISTSASLRENQDEKYMALALIEAQAAFAAKEVPVGAVLVSSEGQVLATGRNRVEATGDASAHAELECLRAAALGAARHGQGKWRMLNCTLYVTLEPCLMCLGAVQSFRVQRVVYGARSTLLGAIESYVKVLEQAPHPFHSTLEVKGGVHAAQCGDLMKRFFAERRLESERMATKVREAQREEKRFDTVT 238
            MI GKALQPRSVTFLALLSLLCPILLPTHAFLHTCRLSSPHARSFAVNSISTSASLRENQDEKYMALALIEAQAAFAAKEVPVGAVLVSSEGQVLATGRNRVEATGDASAHAELECLRAAALGAARHGQGKWRMLNCTLYVTLEPCLMCLGAVQSFRVQRVVYGARSTLLGAIESYVKVLEQAPHPFHSTLEVKGGVHAAQCGDLMKRFFAERRLESERMATKVREAQREEKRFDTVT
Sbjct:    1 MICGKALQPRSVTFLALLSLLCPILLPTHAFLHTCRLSSPHARSFAVNSISTSASLRENQDEKYMALALIEAQAAFAAKEVPVGAVLVSSEGQVLATGRNRVEATGDASAHAELECLRAAALGAARHGQGKWRMLNCTLYVTLEPCLMCLGAVQSFRVQRVVYGARSTLLGAIESYVKVLEQAPHPFHSTLEVKGGVHAAQCGDLMKRFFAERRLESERMATKVREAQREEKRFDTVT 238          
BLAST of EWM30484.1 vs. NCBI_GenBank
Match: gi|545712381|ref|XP_005708495.1| (tRNA-specific adenosine deaminase [Galdieria sulphuraria] >gi|452824976|gb|EME31975.1| tRNA-specific adenosine deaminase [Galdieria sulphuraria])

HSP 1 Score: 141.739 bits (356), Expect = 6.188e-39
Identity = 71/155 (45.81%), Postives = 102/155 (65.81%), Query Frame = 0
Query:   60 QDEKYMALALIEAQAAFAAKEVPVGAVLVSSEGQVLATGRNRVEATGDASAHAELECLRAAALGAARHGQGKWRMLNCTLYVTLEPCLMCLGAVQSFRVQRVVYGARSTLLGAIESYVKVLEQAPHPFHSTLEVKGGVHAAQCGDLMKRFFAERR 214
            Q E +M +AL  A+ +F   EVP+GA+LV ++G+V+A GRN+VE T D + HAEL+C++AA         G WR+LN TLY TLEPC MCL A+Q  RV  +VYGA+   LGAIES+  ++ Q  HP+H    + GG+   +C + +++FF+  R
Sbjct:    8 QHEYFMRIALELAKQSFYQGEVPIGAILVDAKGKVIAKGRNQVETTKDPTQHAELQCIQAATRVC-----GNWRLLNTTLYSTLEPCAMCLSALQLARVSFIVYGAKDFRLGAIESWYPLV-QVKHPYHRITHM-GGILEEECAEWIQKFFSNIR 155          
BLAST of EWM30484.1 vs. NCBI_GenBank
Match: gi|873220519|emb|CEM35424.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 142.124 bits (357), Expect = 1.050e-38
Identity = 77/154 (50.00%), Postives = 101/154 (65.58%), Query Frame = 0
Query:   61 DEKYMALALIEAQAAFAAKEVPVGAVLVSSEGQVLATGRNRVEATGDASAHAELECLRAAALGAARHGQGKWRMLNCTLYVTLEPCLMCLGAVQSFRVQRVVYGARSTLLGAIESYVKVLEQAPHPFHSTLEVKGGVHAAQCGDLMKRFFAERR 214
            DE+YM LAL +A  A    EVP+GAVLV  +G+VL+ GRN VEA  DA+AHAEL+C+R A+        G WR+LNCTLY TLEPC MC+GA+Q  R+  +VYGA    +G   S+V +  +  HPFH  + V+GGV A +   L++ FF E R
Sbjct:   24 DERYMRLALQQAAMAAERGEVPIGAVLVDGQGEVLSVGRNGVEAAHDATAHAELQCIREAS-----QILGTWRLLNCTLYTTLEPCPMCVGAMQLARIHTLVYGASDNRMGGAGSWVSLATEPKHPFHQ-MAVRGGVMATEARQLLRTFFREAR 171          
BLAST of EWM30484.1 vs. NCBI_GenBank
Match: gi|516859478|ref|WP_018133971.1| (tRNA-specific adenosine deaminase [Acaricomes phytoseiuli])

HSP 1 Score: 140.969 bits (354), Expect = 1.337e-38
Identity = 80/166 (48.19%), Postives = 105/166 (63.25%), Query Frame = 0
Query:   49 SISTSASLRENQDEKYMALALIEAQAAFAAKEVPVGAVLVSSEGQVLATGRNRVEATGDASAHAELECLRAAALGAARHGQGKWRMLNCTLYVTLEPCLMCLGAVQSFRVQRVVYGARSTLLGAIESYVKVLEQAPHPFHSTLEVKGGVHAAQCGDLMKRFFAERR 214
            S S S +   NQ E++M  ALIEA+AA    +VP+GAV++S+EG VL TGRNR EA  D + HAE+  LR+AA        G WR+ +CTL VTLEPC MC GA+   RV RVV G+     GA  S ++VL + P   H  +EV GGV  A+C +L++ FF E+R
Sbjct:    2 SQSRSTTPAPNQSEEWMGTALIEARAALETGDVPIGAVVISAEGAVLGTGRNRREADQDPTGHAEILALRSAA-----ATTGSWRLEDCTLVVTLEPCAMCAGAIVLARVPRVVLGSWDPKAGAAGSALEVLRE-PRLNH-WVEVYGGVREAECAELLRGFFEEQR 160          
BLAST of EWM30484.1 vs. NCBI_GenBank
Match: gi|971510958|dbj|GAQ87257.1| (tRNA arginine adenosine deaminase [Klebsormidium nitens])

HSP 1 Score: 140.584 bits (353), Expect = 3.006e-38
Identity = 80/183 (43.72%), Postives = 108/183 (59.02%), Query Frame = 0
Query:   53 SASLRENQDEKYMALALIEAQAAFAAKEVPVGAVLVSSEGQVLATGRNRVEATGDASAHAELECLRAAALGAARHGQGKWRMLNCTLYVTLEPCLMCLGAVQSFRVQRVVYGARSTLLGAIESYVKVL------------------EQAPHPFHSTLEVKGGVHAAQCGDLMKRFFAERRLES 217
            SASL  +QD  +M LAL EA+      E+PVGAVLV  + +VLA   NRVE   D + HAE+ C+R AA          WR+L+CTLYVTLEPC MC GA+   R++R+V+GA +TLLGA  S++++                    +A HPFH  ++V  G+ +A+   LMK FF  RRLE+
Sbjct:    2 SASLASDQDASFMRLALAEAERGAGEGEIPVGAVLVLGD-EVLAKAHNRVERGKDPTLHAEMICIREAA-----KKLKAWRLLDCTLYVTLEPCPMCAGAILQSRIKRLVWGAPNTLLGADGSWIRMFPVSTADPVAESTNYVLGSPRACHPFHPEIKVTRGLLSAESAALMKSFFRRRRLEN 178          
BLAST of EWM30484.1 vs. NCBI_GenBank
Match: gi|647287646|ref|WP_025732582.1| (tRNA-specific adenosine deaminase [Carnimonas nigrificans])

HSP 1 Score: 137.117 bits (344), Expect = 2.762e-37
Identity = 79/158 (50.00%), Postives = 101/158 (63.92%), Query Frame = 0
Query:   61 DEKYMALALIEAQAAFAAKEVPVGAVLVSSEGQVLATGRNRVEATGDASAHAELECLRAAALGAARHGQGKWRMLNCTLYVTLEPCLMCLGAVQSFRVQRVVYGARSTLLGAIESYVKVLEQAPHPFHSTLEVKGGVHAAQCGDLMKRFFAERRLESE 218
            DE YM  AL +A+ AFAA EVPVGAV+VS++G ++  G N   A  D SAHAEL+ +RAAA          +R+L+CTL+VTLEPC+MCLGA+   RV RVVY A     G IES   +  Q P  FH   +++GGV A+    L+KRFF+ERR  S 
Sbjct:    4 DEFYMHRALDQARLAFAAGEVPVGAVVVSAQGAIIGAGYNAPIACHDPSAHAELQAIRAAAAQL-----NNYRLLDCTLFVTLEPCMMCLGAILQARVARVVYAAAEPKSGMIESRANLAAQ-PWHFHHP-QIQGGVLASASSQLLKRFFSERRRASN 154          
BLAST of EWM30484.1 vs. NCBI_GenBank
Match: gi|1026777241|gb|OAE35778.1| (hypothetical protein AXG93_3524s1130 [Marchantia polymorpha subsp. ruderalis])

HSP 1 Score: 143.665 bits (361), Expect = 3.349e-37
Identity = 78/189 (41.27%), Postives = 114/189 (60.32%), Query Frame = 0
Query:   51 STSASLRENQDEKYMALALIEAQAAFAAKEVPVGAVLVSSEGQVLATGRNRVEATGDASAHAELECLRAAALGAARHGQGKWRMLNCTLYVTLEPCLMCLGAVQSFRVQRVVYGARSTLLGAIESYVKV----------------LEQAPHPFHSTLEVKGGVHAAQCGDLMKRFFAERRLESERMATK 223
            +T     + +DEK+M  AL+EA+ A +  EVPVGAV+V + G+++A   NRVEA GD +AHAE+ C+R+A+        G WR+ + ++YVT+EPC MC GA+   RV+RVV+GAR+ LLGA  S+V +                L+Q  HPFH ++EV+  V +  C  +M+ FF  RR +    A K
Sbjct:  196 TTQCQWNDVEDEKFMLEALLEAKKAASLGEVPVGAVVVQN-GRIIARAFNRVEAEGDPTAHAEMLCIRSAS-----KTNGDWRLTDASIYVTMEPCAMCAGALLQARVKRVVWGARNKLLGADGSWVSLFPNCESHVDGEAEQSSLQQQQHPFHKSVEVRREVLSDDCSMIMRTFFRSRRKDEAPNAKK 378          
BLAST of EWM30484.1 vs. NCBI_GenBank
Match: gi|1214420051|ref|WP_088811893.1| (tRNA adenosine(34) deaminase TadA [Polynucleobacter sp. MWH-VicM1] >gi|1210538088|emb|SNC59186.1| tRNA(adenine34) deaminase [Polynucleobacter sp. MWH-VicM1])

HSP 1 Score: 136.732 bits (343), Expect = 4.031e-37
Identity = 78/157 (49.68%), Postives = 100/157 (63.69%), Query Frame = 0
Query:   60 QDEKYMALALIEAQAAFAAKEVPVGAVLVSSEGQVLATGRNRVEATGDASAHAELECLRAAALGAARHGQG--KWRMLNCTLYVTLEPCLMCLGAVQSFRVQRVVYGARSTLLGAIESYVKVLEQAPHPFHSTLEVKGGVHAAQCGDLMKRFFAERR 214
            QD ++M LAL+EAQ A A  EVPVGAVLVS + QV+ATG N+  +  D SAHAE+  LRAA       GQ    +R+ N TLYVTLEPC+MC GA+   R+ RVVYGA     G + S + + +  P   H T+ V+GGV A +C  ++K FF ERR
Sbjct:    5 QDLEFMQLALVEAQKARALGEVPVGAVLVS-DNQVIATGHNQPISNNDPSAHAEVAALRAA-------GQNLSNYRLPNTTLYVTLEPCMMCCGAIMHARISRVVYGAADAKTGCVHSVLNLFDN-PQLNHHTM-VEGGVLAEECAQVLKDFFKERR 151          
BLAST of EWM30484.1 vs. NCBI_GenBank
Match: gi|1120063365|ref|WP_072936405.1| (tRNA-specific adenosine deaminase [Schwartzia succinivorans] >gi|1109736988|emb|SHF29082.1| tRNA(adenine34) deaminase [Schwartzia succinivorans DSM 10502])

HSP 1 Score: 135.576 bits (340), Expect = 9.522e-37
Identity = 71/155 (45.81%), Postives = 94/155 (60.65%), Query Frame = 0
Query:   61 DEKYMALALIEAQAAFAAKEVPVGAVLVSSEGQVLATGRNRVEATGDASAHAELECLRAAALGAARHGQGKWRMLNCTLYVTLEPCLMCLGAVQSFRVQRVVYGARSTLLGAIESYVKVLEQAPHP-FHSTLEVKGGVHAAQCGDLMKRFFAERR 214
            D KYMA+AL EA+ A A  E+PVGAVLV S G+VL+ G N  E+  DA+AHAE++ +R A         G W +  CTLYVTLEPC MC GA+   ++ RVVYG      GA+ES   +     HP  H  +EV  G+   +C +++ RFF +RR
Sbjct:    4 DYKYMAMALEEAELAMAQDEIPVGAVLVDSTGRVLSKGHNERESLHDATAHAEIQVIREAG-----KIMGDWHLTGCTLYVTLEPCPMCAGALIMAKISRVVYGLPDAKTGAVESIFNI---PGHPALHQNIEVTAGIMEDECHEILMRFFKKRR 150          
The following BLAST results are available for this feature:
BLAST of EWM30484.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585113148|gb|EWM30484.1|1.886e-173100.00trna-specific adenosine deaminase [Nannochloropsis... [more]
gi|553195793|ref|XP_005856209.1|6.972e-17299.58trna-specific adenosine deaminase [Nannochloropsis... [more]
gi|545712381|ref|XP_005708495.1|6.188e-3945.81tRNA-specific adenosine deaminase [Galdieria sulph... [more]
gi|873220519|emb|CEM35424.1|1.050e-3850.00unnamed protein product [Vitrella brassicaformis C... [more]
gi|516859478|ref|WP_018133971.1|1.337e-3848.19tRNA-specific adenosine deaminase [Acaricomes phyt... [more]
gi|971510958|dbj|GAQ87257.1|3.006e-3843.72tRNA arginine adenosine deaminase [Klebsormidium n... [more]
gi|647287646|ref|WP_025732582.1|2.762e-3750.00tRNA-specific adenosine deaminase [Carnimonas nigr... [more]
gi|1026777241|gb|OAE35778.1|3.349e-3741.27hypothetical protein AXG93_3524s1130 [Marchantia p... [more]
gi|1214420051|ref|WP_088811893.1|4.031e-3749.68tRNA adenosine(34) deaminase TadA [Polynucleobacte... [more]
gi|1120063365|ref|WP_072936405.1|9.522e-3745.81tRNA-specific adenosine deaminase [Schwartzia succ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna197rna197Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications