rna1969, rna1969 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1969
Unique Name	rna1969
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1541
Alignment location	CM002458.1:593947..595645 -

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Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100002g49.4791.mrna
Orig protein id	gnl\|cribi\|Naga_100002g49.4791
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:593947..595645 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100002g49	gene1880	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1969	rna1969-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28672.1	cds1964	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:593947..595645-
coding sequence from alignment at CM002458.1:593947..595645-

mRNA sequence

>rna1969 ID=rna1969|Name=rna1969|organism=Nannochloropsis gaditana|type=mRNA|length=1541bp
CGGATAACTGGTCAAGGTCACGCATATTCTGTGTTACGAAACCTTTCACT
GCAGGGCATGATTACATCGGGACGGCTTGATTTTGTTGTCTCGGCACGCC
TCTCCATATTAGGGTTATTCCTTGGGATGCTGGCCTTTACCTCGTCAGCT
AGTACTGTCCAGTCCCCGACCGGGCCGTTGCCATCGATGTTGCCTGACAT
CGACGAGAGAAACGAGGACTCACCAGGTGAAGCAGTGATTCGCTTGGCCG
AGTCTCTCATAAACATCGAGTCGCTATCGGGGAGTGAGCACGCTATGGCA
CACGCTCTGAAAGGGTGGTTAAGCAAGCGTGGGTGGGAGGTTGTTCTTCA
GCCGGTGCCGCCCGCCCTCGGGCACGAGGAAGAGGTGAGAAAAATGAACA
CCCTTTCCTGGCCGATACTCGAGGTCACGGACTTACGGCTTCTAAAAACT
CATCCTAGGGTGAACGCTGGAACGTCTACGCCTTCCGTCCCGGCACTGGC
GTCGCACGTCGGGATAAAGGCCCGAAGGTTCTGTTGAATTCTCACATTGA
CACGGTACCCCCCTTCTATTCCGCGACCGTGGATCGACAAAACGGTATAA
TTAGAGGTCGGGGTGCCTGCGACACAAAAGGTATTCTGGCCGCACAATTA
CTGGCGGCACAACGCCTGGTCGAGTCGGGCCAAGCCGCAGACCTGGGGCT
ACTCTACGTGGTTTCGGAGGAGACCGATCACAGTGGTATTAAGCAAGCGA
ACAGTCTAAACCTCCGCCCCAACTTTCTTTTAGTTGGTGAACCAACAGGG
TCGAAAATGATTCGCTCTCAGAAGGGTCTCCTGAAACTGCGGTTACTTTC
GCATGGCGTGTCCTGCCATAGCGGTTATCCGAGCTTGGGAAAGTCCGCCA
TCGACCCACTTGTAGACGCTCTGCAAGATCTTAAACGTGCTCATTGGCCT
AAAAATGAAGAATTGGGGGCCACTACACTAAACATTGGCCTGCTAAAAGG
CGGGCATGCTGCTAATGCTTTGGCAGCGGAGGCTGAGGCTACCCTTGTCT
TCCGCTTGATAACACCTCCCGAGCAGGTCTTAGAGACTGTGCGAGCAACT
GTGGGCGATCGCGCGGACGTGGAGGTCATCACTGCGAATACTCCCGTGCA
ATTAAATACGCTTGAAGGATATGCCACGGACGTGGCGTGTTTTAACACGG
ATATAGCCTACTTCGATCTGCGTGAACCCACCGCCCAGGCCTTTCTTATG
GGCCCCGGATCCATCTTGGACGCACACAGCGACCACGAAGTCATCCACAT
TCCTGAGTTGCAGCGTGCAGTCGCTTATTATGAGGAAATCCTTCTCCGCC
TTCTTAAGGGGCCACGGGGGAGCACACAGCGCGTGGCGTCTCAGGCCGCA
GAAAGTGTAGGAGCGAGTGTTGTTGATGCCAGGGCACTTTAGCACCGAAA
GTTTCGTGAAGAAGAAGCATGAAAGAGCTCTGAATCATCAGATTAGAACC
TATAAAACGTCTGAAAAAAGAAATGATACAGTGGGGAAATG

protein sequence of rna1969

>rna1969-protein ID=rna1969-protein|Name=rna1969|organism=Nannochloropsis gaditana|type=polypeptide|length=391bp
MQGRRMQISLFQITSLMAVVVVHPVAAFVSSKPAFNFRSRSFYGIVNRQE
ITTPFRANLVGPVNPSPCRVRLKAEEASKEPEGDGGRRRKVIRKKRVRKD
RSQEGGAASEAVEASPPMDPRLKQAQEDIMRREFDRELVLEEFATPRVKD
RVRIPTPSPVVADRQLEKGEREGNGRYEAKQDRQKEQNERSDTLDAAINS
GVPENLRYDPTLELPIPSETVVSLSDLATKFDAAIETKGTALPTLAELGK
KAKVSILRRQLEEEEKATKELEPIDDYDLSSAILGEGRPVLGIGLPYLQS
CHTVIILVSLLCAFIEFPGFPLTNFPYELRDFLKQGLVAVYLINAVLAWD
SIKEARKRDQSVFFWALKCFVLGALAHNELLLIREKPQNVA

mRNA from alignment at CM002458.1:593947..595645-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1969 ID=rna1969|Name=rna1969|organism=Nannochloropsis gaditana|type=mRNA|length=1699bp|location=Sequence derived from alignment at CM002458.1:593947..595645- (Nannochloropsis gaditana)
AGATGTTTTGGTCGTTAATGAGTCCATGTAGTGTGAGTGCGTGTCGACAG
AGGTCGAGTGCGAGGTTGAGCGAACGGGAGGCAACCCTGTCGCTGGCGAG
GCCCCACATTGGAAGACGATAAGCACCCAAGCCCTGACCAGATTTTTTGA
AGTACGACTTGTTTAGCTCGTGTCCCCGACCTTCCAGAGACTGCATGATA
AATGGAAGGCAGACGTGTTATTTAGCTCACACCACTGATTGCGACAACAC
AGGTGCCACAGCTAGTCTGGATATGCGCCACAATACCGCTCACTAAAACA
TAGTACCAACGAGTGGGTAGCACTAGGACGGACATCCACAAGCGCAGTCA
AGTATCATGCAGGCAAGTCTGATATGATGTTCCGCGTTTGATTAGAATTT
TGGTGAAGTTGCACAATTTGATATCGGTTATATCTATTCAACCTTCAACC
CTATGACACCGACAGGGTCGACGGATGCAAATTTCCCTATTCCAAATTAC
ATCACTTATGGCTGTTGTGGTAGTCCATCCTGTTGCGGCCTTTGTTTCCT
CGAAGCCTGCCTTCAATTTTAGGTCGCGATCTTTTTACGGCATTGTGAAC
CGTCAAGAAATTACGACTCCCTTCCGCGCAAACTTGGTAGGACCTGTGAA
TCCATCTCCCTGTAGGGTACGACTGAAAGCAGAGGAAGCAAGCAAAGAAC
CGGAAGGAGATGGTGGAAGGCGACGGAAGGTAATCAGGAAGAAGCGTGTC
CGCAAGGATCGATCTCAGGAGGGTGGCGCCGCGTCAGAAGCAGTTGAGGC
CTCGCCGCCCATGGATCCACGGCTAAAACAGGCACAAGAAGACATCATGA
GAAGGGAGTTTGATCGAGAACTAGTTCTTGAAGAGTTTGCTACACCCCGT
GTCAAGGACCGGGTCCGGATTCCCACACCTAGCCCTGTCGTTGCGGACAG
ACAGTTGGAGAAAGGTGAGAGAGAGGGTAACGGACGATATGAAGCCAAAC
AAGACAGGCAAAAAGAACAAAACGAGAGGTCGGACACCCTCGACGCCGCA
ATAAATAGTGGTGTACCAGAGAATCTACGCTATGACCCTACCTTGGAGCT
GCCGATCCCCTCGGAGACGGTTGTCTCCCTCTCAGACCTCGCCACCAAGT
TTGACGCCGCCATCGAGACGAAGGGCACAGCACTCCCCACACTGGCAGAG
CTGGGCAAAAAGGCGAAGGTTTCTATTTTGCGAAGGCAGCTGGAGGAGGA
AGAAAAAGCGACCAAAGAGCTGGAACCCATTGATGACTACGACCTGAGCT
CCGCCATCCTTGGGGAGGGCCGGCCTGTCTTGGGCATCGGACTACCGTAT
TTGCAAAGCTGCCATACAGTCATAATTCTTGTGAGCCTTTTGTGTGCTTT
CATTGAGTTTCCCGGCTTTCCGCTGACAAATTTCCCCTATGAGTTGCGGG
ATTTTCTGAAGCAGGGCCTTGTGGCGGTCTACCTGATCAACGCCGTCTTG
GCATGGGACAGCATCAAGGAGGCGCGGAAGCGGGACCAAAGTGTCTTTTT
CTGGGCGCTTAAATGCTTTGTCTTGGGCGCGCTTGCCCACAACGAGCTGT
TGCTTATCCGAGAAAAGCCTCAGAATGTCGCGTGAGGATGACAGGAAAAA
GAGGTAGAGAAGCGTGATGAAGAATTTACAATTTCAAGCGCTGTGACAT

Coding sequence (CDS) from alignment at CM002458.1:593947..595645-

>rna1969 ID=rna1969|Name=rna1969|organism=Nannochloropsis gaditana|type=CDS|length=2352bp|location=Sequence derived from alignment at CM002458.1:593947..595645- (Nannochloropsis gaditana)
GGTCGACGGATGCAAATTTCCCTATTCCAAATTACATCACTTATGGCTGT
TGTGGTAGTCCATCCTGTTGCGGCCTTTGTTTCCTCGAAGCCTGCCTTCA
ATTTTAGGTCGCGATCTTTTTACGGCATTGTGAACCGTCAAGAAATTACG
ACTCCCTTCCGCGCAAACTTGGTAGGACCTGTGAATCCATCTCCCTGTAG
GGTACGACTGAAAGCAGAGGAAGCAAGCAAAGAACCGGAAGGAGATGGTG
GAAGGCGACGGAAGGTAATCAGGAAGAAGCGTGTCCGCAAGGATCGATCT
CAGGAGGGTGGCGCCGCGTCAGAAGCAGTTGAGGCCTCGCCGCCCATGGA
TCCACGGCTAAAACAGGCACAAGAAGACATCATGAGAAGGGAGTTTGATC
GAGAACTAGTTCTTGAAGAGTTTGCTACACCCCGTGTCAAGGACCGGGTC
CGGATTCCCACACCTAGCCCTGTCGTTGCGGACAGACAGTTGGAGAAAGG
TGAGAGAGAGGGTAACGGACGATATGAAGCCAAACAAGACAGGCAAAAAG
AACAAAACGAGAGGTCGGACACCCTCGACGCCGCAATAAATAGTGGTGTA
CCAGAGAATCTACGCTATGACCCTACCTTGGAGCTGCCGATCCCCTCGGA
GACGGTTGTCTCCCTCTCAGACCTCGCCACCAAGTTTGACGCCGCCATCG
AGACGAAGGGCACAGCACTCCCCACACTGGCAGAGCTGGGCAAAAAGGCG
AAGGTTTCTATTTTGCGAAGGCAGCTGGAGGAGGAAGAAAAAGCGACCAA
AGAGCTGGAACCCATTGATGACTACGACCTGAGCTCCGCCATCCTTGGGG
AGGGCCGGCCTGTCTTGGGCATCGGACTACCGTATTTGCAAAGCTGCCAT
ACAGTCATAATTCTTGTGAGCCTTTTGTGTGCTTTCATTGAGTTTCCCGG
CTTTCCGCTGACAAATTTCCCCTATGAGTTGCGGGATTTTCTGAAGCAGG
GCCTTGTGGCGGTCTACCTGATCAACGCCGTCTTGGCATGGGACAGCATC
AAGGAGGCGCGGAAGCGGGACCAAAGTGTCTTTTTCTGGGCGCTTAAATG
CTTTGTCTTGGGCGCGCTTGCCCACAACGAGCTGTTGCTTATCCGAGAAA
AGCCTCAGAATGTCGCGTGAATGCAGGGTCGACGGATGCAAATTTCCCTA
TTCCAAATTACATCACTTATGGCTGTTGTGGTAGTCCATCCTGTTGCGGC
CTTTGTTTCCTCGAAGCCTGCCTTCAATTTTAGGTCGCGATCTTTTTACG
GCATTGTGAACCGTCAAGAAATTACGACTCCCTTCCGCGCAAACTTGGTA
GGACCTGTGAATCCATCTCCCTGTAGGGTACGACTGAAAGCAGAGGAAGC
AAGCAAAGAACCGGAAGGAGATGGTGGAAGGCGACGGAAGGTAATCAGGA
AGAAGCGTGTCCGCAAGGATCGATCTCAGGAGGGTGGCGCCGCGTCAGAA
GCAGTTGAGGCCTCGCCGCCCATGGATCCACGGCTAAAACAGGCACAAGA
AGACATCATGAGAAGGGAGTTTGATCGAGAACTAGTTCTTGAAGAGTTTG
CTACACCCCGTGTCAAGGACCGGGTCCGGATTCCCACACCTAGCCCTGTC
GTTGCGGACAGACAGTTGGAGAAAGGTGAGAGAGAGGGTAACGGACGATA
TGAAGCCAAACAAGACAGGCAAAAAGAACAAAACGAGAGGTCGGACACCC
TCGACGCCGCAATAAATAGTGGTGTACCAGAGAATCTACGCTATGACCCT
ACCTTGGAGCTGCCGATCCCCTCGGAGACGGTTGTCTCCCTCTCAGACCT
CGCCACCAAGTTTGACGCCGCCATCGAGACGAAGGGCACAGCACTCCCCA
CACTGGCAGAGCTGGGCAAAAAGGCGAAGGTTTCTATTTTGCGAAGGCAG
CTGGAGGAGGAAGAAAAAGCGACCAAAGAGCTGGAACCCATTGATGACTA
CGACCTGAGCTCCGCCATCCTTGGGGAGGGCCGGCCTGTCTTGGGCATCG
GACTACCGTATTTGCAAAGCTGCCATACAGTCATAATTCTTGTGAGCCTT
TTGTGTGCTTTCATTGAGTTTCCCGGCTTTCCGCTGACAAATTTCCCCTA
TGAGTTGCGGGATTTTCTGAAGCAGGGCCTTGTGGCGGTCTACCTGATCA
ACGCCGTCTTGGCATGGGACAGCATCAAGGAGGCGCGGAAGCGGGACCAA
AGTGTCTTTTTCTGGGCGCTTAAATGCTTTGTCTTGGGCGCGCTTGCCCA
CAACGAGCTGTTGCTTATCCGAGAAAAGCCTCAGAATGTCGCGTGAATGC
AG

Synonyms

Publications