EWM28672.1, cds1964 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of EWM28672.1 vs. NCBI_GenBank
Match: gi|585111095|gb|EWM28672.1| (hypothetical protein Naga_100002g49 [Nannochloropsis gaditana]) HSP 1 Score: 793.497 bits (2048), Expect = 0.000e+0 Identity = 391/391 (100.00%), Postives = 391/391 (100.00%), Query Frame = 0
Query: 1 MQGRRMQISLFQITSLMAVVVVHPVAAFVSSKPAFNFRSRSFYGIVNRQEITTPFRANLVGPVNPSPCRVRLKAEEASKEPEGDGGRRRKVIRKKRVRKDRSQEGGAASEAVEASPPMDPRLKQAQEDIMRREFDRELVLEEFATPRVKDRVRIPTPSPVVADRQLEKGEREGNGRYEAKQDRQKEQNERSDTLDAAINSGVPENLRYDPTLELPIPSETVVSLSDLATKFDAAIETKGTALPTLAELGKKAKVSILRRQLEEEEKATKELEPIDDYDLSSAILGEGRPVLGIGLPYLQSCHTVIILVSLLCAFIEFPGFPLTNFPYELRDFLKQGLVAVYLINAVLAWDSIKEARKRDQSVFFWALKCFVLGALAHNELLLIREKPQNVA 391
MQGRRMQISLFQITSLMAVVVVHPVAAFVSSKPAFNFRSRSFYGIVNRQEITTPFRANLVGPVNPSPCRVRLKAEEASKEPEGDGGRRRKVIRKKRVRKDRSQEGGAASEAVEASPPMDPRLKQAQEDIMRREFDRELVLEEFATPRVKDRVRIPTPSPVVADRQLEKGEREGNGRYEAKQDRQKEQNERSDTLDAAINSGVPENLRYDPTLELPIPSETVVSLSDLATKFDAAIETKGTALPTLAELGKKAKVSILRRQLEEEEKATKELEPIDDYDLSSAILGEGRPVLGIGLPYLQSCHTVIILVSLLCAFIEFPGFPLTNFPYELRDFLKQGLVAVYLINAVLAWDSIKEARKRDQSVFFWALKCFVLGALAHNELLLIREKPQNVA
Sbjct: 1 MQGRRMQISLFQITSLMAVVVVHPVAAFVSSKPAFNFRSRSFYGIVNRQEITTPFRANLVGPVNPSPCRVRLKAEEASKEPEGDGGRRRKVIRKKRVRKDRSQEGGAASEAVEASPPMDPRLKQAQEDIMRREFDRELVLEEFATPRVKDRVRIPTPSPVVADRQLEKGEREGNGRYEAKQDRQKEQNERSDTLDAAINSGVPENLRYDPTLELPIPSETVVSLSDLATKFDAAIETKGTALPTLAELGKKAKVSILRRQLEEEEKATKELEPIDDYDLSSAILGEGRPVLGIGLPYLQSCHTVIILVSLLCAFIEFPGFPLTNFPYELRDFLKQGLVAVYLINAVLAWDSIKEARKRDQSVFFWALKCFVLGALAHNELLLIREKPQNVA 391
BLAST of EWM28672.1 vs. NCBI_GenBank
Match: gi|553194036|ref|XP_005855879.1| (hypothetical protein NGA_2005520, partial [Nannochloropsis gaditana CCMP526] >gi|553194640|ref|XP_005856003.1| hypothetical protein NGA_2005510, partial [Nannochloropsis gaditana CCMP526] >gi|422293050|gb|EKU20351.1| hypothetical protein NGA_2005510, partial [Nannochloropsis gaditana CCMP526] >gi|422293172|gb|EKU20472.1| hypothetical protein NGA_2005520, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 781.171 bits (2016), Expect = 0.000e+0 Identity = 386/389 (99.23%), Postives = 386/389 (99.23%), Query Frame = 0
Query: 3 GRRMQISLFQITSLMAVVVVHPVAAFVSSKPAFNFRSRSFYGIVNRQEITTPFRANLVGPVNPSPCRVRLKAEEASKEPEGDGGRRRKVIRKKRVRKDRSQEGGAASEAVEASPPMDPRLKQAQEDIMRREFDRELVLEEFATPRVKDRVRIPTPSPVVADRQLEKGEREGNGRYEAKQDRQKEQNERSDTLDAAINSGVPENLRYDPTLELPIPSETVVSLSDLATKFDAAIETKGTALPTLAELGKKAKVSILRRQLEEEEKATKELEPIDDYDLSSAILGEGRPVLGIGLPYLQSCHTVIILVSLLCAFIEFPGFPLTNFPYELRDFLKQGLVAVYLINAVLAWDSIKEARKRDQSVFFWALKCFVLGALAHNELLLIREKPQNVA 391
GRRMQISLFQITSLMAVV VHPVAAFVSSKPAFNFRSRSFYGIVNRQEITTPFRANLVGPVNPSPCRVRLKAEEASKEPEGDGGRRRKVIRKKRVRKDRSQEGGAASEA EASPPMDPRLKQAQEDIMRREFDRELVLEEFATPRVKDRVRIPTPS VVADRQLEKGEREGNGRYEAKQDRQKEQNERSDTLDAAINSGVPENLRYDPTLELPIPSETVVSLSDLATKFDAAIETKGTALPTLAELGKKAKVSILRRQLEEEEKATKELEPIDDYDLSSAILGEGRPVLGIGLPYLQSCHTVIILVSLLCAFIEFPGFPLTNFPYELRDFLKQGLVAVYLINAVLAWDSIKEARKRDQSVFFWALKCFVLGALAHNELLLIREKPQNVA
Sbjct: 1 GRRMQISLFQITSLMAVVAVHPVAAFVSSKPAFNFRSRSFYGIVNRQEITTPFRANLVGPVNPSPCRVRLKAEEASKEPEGDGGRRRKVIRKKRVRKDRSQEGGAASEAGEASPPMDPRLKQAQEDIMRREFDRELVLEEFATPRVKDRVRIPTPSAVVADRQLEKGEREGNGRYEAKQDRQKEQNERSDTLDAAINSGVPENLRYDPTLELPIPSETVVSLSDLATKFDAAIETKGTALPTLAELGKKAKVSILRRQLEEEEKATKELEPIDDYDLSSAILGEGRPVLGIGLPYLQSCHTVIILVSLLCAFIEFPGFPLTNFPYELRDFLKQGLVAVYLINAVLAWDSIKEARKRDQSVFFWALKCFVLGALAHNELLLIREKPQNVA 389
BLAST of EWM28672.1 vs. NCBI_GenBank
Match: gi|299472618|emb|CBN78270.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 133.65 bits (335), Expect = 1.175e-31 Identity = 60/121 (49.59%), Postives = 85/121 (70.25%), Query Frame = 0
Query: 260 QLEEEEKATKELEPIDDYDLSSAILGEGRPVLGIGLPYLQSCHTVIILVSLLCAFIEFPGFPLTNFPYELRDFLKQGLVAVYLINAVLAWDSIKEARKRDQSVFFWALKCFVLGALAHNEL 380
+L+ E + + L + YD S++LGEG+P +GI YLQS HTV++ + LLC F+E PGFPLT+ PY++R+FLK GL+ Y+INA +A+ S EA++ Q FWA+K FVLG L+ NEL
Sbjct: 264 ELDPEADSEEALFTTESYDAFSSVLGEGKPFVGIANSYLQSGHTVLLALVLLCGFVEIPGFPLTSLPYDVREFLKTGLLVTYVINAGIAYLSYLEAKRIGQPAGFWAVKGFVLGGLSFNEL 384
BLAST of EWM28672.1 vs. NCBI_GenBank
Match: gi|545709735|ref|XP_005707177.1| (hypothetical protein Gasu_21150 [Galdieria sulphuraria] >gi|452823648|gb|EME30657.1| hypothetical protein Gasu_21150 [Galdieria sulphuraria]) HSP 1 Score: 101.679 bits (252), Expect = 1.569e-20 Identity = 63/205 (30.73%), Postives = 104/205 (50.73%), Query Frame = 0
Query: 180 KQDRQKEQNERSDTLDAAINSGVPENLRY--DPTLELPIPSETVVSLSDLATKFDAAIETKGTALPTLAELGKKAKVSILRRQLEEEEKATKELEPIDDYDLSSAILGEGRPVLG--IGLPYLQSCHTVIILVSLLCAFIEFPGFPLTNFPYELRDFLKQGLVAVYLINAVLAWDSIKEARKRDQSVFFWALKCFVLGALAHNEL 380
K++ K++ E S + +I S ++L Y D + P P + ++ +L E KK + ++ ++ K ++ D YD ++A++G GR LPYLQS H V ++V LLC F+ +PGF LT P R+ L++ L V+ +N +LA + EA++R+Q + W +KC +LG LA NEL
Sbjct: 138 KKNANKDRVESSSSKLGSITSNTTKDLSYGDDASPHKPSPDFQIAE----------------DSIKSLTENFKKRRDQFVQNLEKDPNYGLKRIDEDDSYDWAAALIGRGRANKKGFFLLPYLQSGHIVCLVVVLLCTFVYYPGFYLTELPESTREVLRKSLAIVFSVNGILAGYAGWEAKRRNQPIVLWIIKCMLLGGLALNEL 326
BLAST of EWM28672.1 vs. NCBI_GenBank
Match: gi|546311753|ref|XP_005714757.1| (unnamed protein product [Chondrus crispus] >gi|507111207|emb|CDF34938.1| unnamed protein product [Chondrus crispus]) HSP 1 Score: 100.138 bits (248), Expect = 4.485e-20 Identity = 72/170 (42.35%), Postives = 99/170 (58.24%), Query Frame = 0
Query: 223 SLSDLATKFDAAIETKGTALPT--LAEL-------GKKAKVSILRRQLEEEEKATKEL-EPIDDYDLSSAILGEGRP-VLGIG-LPYLQSCHTVIILVSLLCAFIEFPGFPLTNFPYELRDFLKQGLVAVYLINAVLAWDSIKEARKRDQSVFFWALKCFVLGALAHNEL 380
+L D+ + +E ALPT + EL GK+A+V I +LE++ + P +YDL+SAI+G G P G+ LPYLQS H +++LV+LLC F+ +PGFPLT LR +LK GL Y +NA LA + K+A+KR Q FWALK G +A NEL
Sbjct: 159 ALEDVKEERSIEVEEARKALPTNTIRELTQAYRKKGKEAQVLI--DELEKDPDFMFQTGNPEGEYDLTSAIIGTGSPNKQGVYVLPYLQSGHLLLLLVTLLCTFVYYPGFPLTELEDSLRGYLKVGLAITYTLNAGLAILAFKDAQKRGQPAAFWALKTAFFGNIAFNEL 326
BLAST of EWM28672.1 vs. NCBI_GenBank
Match: gi|219110323|ref|XP_002176913.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217411448|gb|EEC51376.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 93.5893 bits (231), Expect = 5.739e-18 Identity = 60/149 (40.27%), Postives = 85/149 (57.05%), Query Frame = 0
Query: 242 LPTLAELGKKAKVSI-------LRRQLEEEEKATKELEPIDD--YDLSSAILGE-GRPVLGIGLPYLQSCHTVIILVSLLCAFIEFPGFPLTNFPYELRDFLKQGLVAVYLINAVLAWDSIKEARKRDQSVFFWALKCFVLGALAHNEL 380
L +AE +K+KV I RR LE++ A + ++ Y SA+LGE +P +GI LQ H V L LL A++E+PGFPLTN P LRD L+ GL +Y IN VLA ++ +A +R Q + W K F +G LA+++L
Sbjct: 147 LARMAEEEEKSKVKIKRSDKEAFRRLLEQQPFADADDSFFEEEAYGTVSALLGERAKPFIGIPTGPLQVGHFVGALGLLLMAYVEYPGFPLTNLPTPLRDCLQGGLGTIYAINTVLAVLALFKAGERGQPKWLWIAKTFSVGGLAYDQL 295
BLAST of EWM28672.1 vs. NCBI_GenBank
Match: gi|873230241|emb|CEM11341.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 94.3597 bits (233), Expect = 1.740e-17 Identity = 48/111 (43.24%), Postives = 65/111 (58.56%), Query Frame = 0
Query: 278 DLSSAILGEG----RPVLG-IGLPYLQSCHTVIILVSLLCAFIEFPGFPLTNFPYELRDFLKQGLVAVYLINAVLAWDSIKEARKRDQSVFFWALKCFVLGALAHNELLLI 383
D A+ GEG +P LG I +LQ+ H V++ V LC +E PG PLTN P +R+F GL V+ +N VL+ SI A R Q +FWA K +LG LA++EL+ I
Sbjct: 281 DAVGAVFGEGLAPAQPFLGFIPTSFLQTGHLVLLFVVALCGLVEDPGNPLTNLPLPIRNFFVTGLGLVFAVNVVLSALSISPAIARKQPWYFWAFKTLLLGGLAYDELMQI 391
BLAST of EWM28672.1 vs. NCBI_GenBank
Match: gi|1072231824|gb|OEU16556.1| (hypothetical protein FRACYDRAFT_239151 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 91.6633 bits (226), Expect = 5.996e-17 Identity = 47/106 (44.34%), Postives = 64/106 (60.38%), Query Frame = 0
Query: 276 DYDLSSAILGE-GRPVLGIGLPYLQSCHTVIILVSLLCAFIEFPGFPLTNFPYELRDFLKQGLVAVYLINAVLAWDSIKEARKRDQSVFFWALKCFVLGALAHNEL 380
+Y SA+LGE +P +GI LQ H + LV +L AFIE+PGFPLTN P +R L+ GL VY IN +LA ++ +A +R Q W K F +G LA ++L
Sbjct: 235 EYTFVSALLGERAKPFMGIPTGPLQVGHFIGALVIVLMAFIEYPGFPLTNLPSPIRGALQGGLGTVYGINVILAIVAVFKAGERGQPALLWIAKVFTVGGLAFDQL 340
BLAST of EWM28672.1 vs. NCBI_GenBank
Match: gi|397590463|gb|EJK55042.1| (hypothetical protein THAOC_25274 [Thalassiosira oceanica]) HSP 1 Score: 88.9669 bits (219), Expect = 1.609e-15 Identity = 45/93 (48.39%), Postives = 59/93 (63.44%), Query Frame = 0
Query: 291 LGIGLPYLQSCHTVIILVSLLCAFIEFPGFPLTNFPYELRDFLKQGLVAVYLINAVLAWDSIKEARKRDQSVFFWALKCFVLGALAHNELLLI 383
LGIG LQ H L ++L AF+E+PGFPLTN P LR L+ GL VY INAVLA + A +R+QS W K F +GA+A+++L+ I
Sbjct: 144 LGIGSGPLQVGHFFGALSAVLMAFVEYPGFPLTNLPDPLRGALQGGLATVYAINAVLAVLAFLSASERNQSPALWGAKTFAVGAIAYDQLMQI 236
BLAST of EWM28672.1 vs. NCBI_GenBank
Match: gi|1210519249|dbj|GAX21833.1| (hypothetical protein FisN_30Hh033 [Fistulifera solaris]) HSP 1 Score: 87.0409 bits (214), Expect = 1.735e-15 Identity = 48/108 (44.44%), Postives = 66/108 (61.11%), Query Frame = 0
Query: 275 DDYDLSSAILGEGRPVLGIGLPY--LQSCHTVIILVSLLCAFIEFPGFPLTNFPYELRDFLKQGLVAVYLINAVLAWDSIKEARKRDQSVFFWALKCFVLGALAHNEL 380
++Y SA+LGE R IG+P +Q H + L LL AF+E+PGFPLTN P LR L+ GL VY IN VLA + +AR+R Q + W K + +G LA+++L
Sbjct: 198 EEYTTISALLGE-RSAKFIGIPAGPIQVGHFIGALGILLMAFVEYPGFPLTNLPTPLRGALQGGLGIVYGINTVLAVAAAFQARQRGQPIPLWVAKTWAVGGLAYDQL 304 The following BLAST results are available for this feature:
BLAST of EWM28672.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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