EWM28672.1, cds1964 (CDS) Nannochloropsis gaditana

Overview
NameEWM28672.1
Unique Namecds1964
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:595284..595289 -
Alignment locationCM002458.1:594011..595180 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28672.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100002g49.4791.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:595284..595289 -
CM002458.1supercontigCM002458.1:594011..595180 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM28672.1 vs. NCBI_GenBank
Match: gi|585111095|gb|EWM28672.1| (hypothetical protein Naga_100002g49 [Nannochloropsis gaditana])

HSP 1 Score: 793.497 bits (2048), Expect = 0.000e+0
Identity = 391/391 (100.00%), Postives = 391/391 (100.00%), Query Frame = 0
Query:    1 MQGRRMQISLFQITSLMAVVVVHPVAAFVSSKPAFNFRSRSFYGIVNRQEITTPFRANLVGPVNPSPCRVRLKAEEASKEPEGDGGRRRKVIRKKRVRKDRSQEGGAASEAVEASPPMDPRLKQAQEDIMRREFDRELVLEEFATPRVKDRVRIPTPSPVVADRQLEKGEREGNGRYEAKQDRQKEQNERSDTLDAAINSGVPENLRYDPTLELPIPSETVVSLSDLATKFDAAIETKGTALPTLAELGKKAKVSILRRQLEEEEKATKELEPIDDYDLSSAILGEGRPVLGIGLPYLQSCHTVIILVSLLCAFIEFPGFPLTNFPYELRDFLKQGLVAVYLINAVLAWDSIKEARKRDQSVFFWALKCFVLGALAHNELLLIREKPQNVA 391
            MQGRRMQISLFQITSLMAVVVVHPVAAFVSSKPAFNFRSRSFYGIVNRQEITTPFRANLVGPVNPSPCRVRLKAEEASKEPEGDGGRRRKVIRKKRVRKDRSQEGGAASEAVEASPPMDPRLKQAQEDIMRREFDRELVLEEFATPRVKDRVRIPTPSPVVADRQLEKGEREGNGRYEAKQDRQKEQNERSDTLDAAINSGVPENLRYDPTLELPIPSETVVSLSDLATKFDAAIETKGTALPTLAELGKKAKVSILRRQLEEEEKATKELEPIDDYDLSSAILGEGRPVLGIGLPYLQSCHTVIILVSLLCAFIEFPGFPLTNFPYELRDFLKQGLVAVYLINAVLAWDSIKEARKRDQSVFFWALKCFVLGALAHNELLLIREKPQNVA
Sbjct:    1 MQGRRMQISLFQITSLMAVVVVHPVAAFVSSKPAFNFRSRSFYGIVNRQEITTPFRANLVGPVNPSPCRVRLKAEEASKEPEGDGGRRRKVIRKKRVRKDRSQEGGAASEAVEASPPMDPRLKQAQEDIMRREFDRELVLEEFATPRVKDRVRIPTPSPVVADRQLEKGEREGNGRYEAKQDRQKEQNERSDTLDAAINSGVPENLRYDPTLELPIPSETVVSLSDLATKFDAAIETKGTALPTLAELGKKAKVSILRRQLEEEEKATKELEPIDDYDLSSAILGEGRPVLGIGLPYLQSCHTVIILVSLLCAFIEFPGFPLTNFPYELRDFLKQGLVAVYLINAVLAWDSIKEARKRDQSVFFWALKCFVLGALAHNELLLIREKPQNVA 391          
BLAST of EWM28672.1 vs. NCBI_GenBank
Match: gi|553194036|ref|XP_005855879.1| (hypothetical protein NGA_2005520, partial [Nannochloropsis gaditana CCMP526] >gi|553194640|ref|XP_005856003.1| hypothetical protein NGA_2005510, partial [Nannochloropsis gaditana CCMP526] >gi|422293050|gb|EKU20351.1| hypothetical protein NGA_2005510, partial [Nannochloropsis gaditana CCMP526] >gi|422293172|gb|EKU20472.1| hypothetical protein NGA_2005520, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 781.171 bits (2016), Expect = 0.000e+0
Identity = 386/389 (99.23%), Postives = 386/389 (99.23%), Query Frame = 0
Query:    3 GRRMQISLFQITSLMAVVVVHPVAAFVSSKPAFNFRSRSFYGIVNRQEITTPFRANLVGPVNPSPCRVRLKAEEASKEPEGDGGRRRKVIRKKRVRKDRSQEGGAASEAVEASPPMDPRLKQAQEDIMRREFDRELVLEEFATPRVKDRVRIPTPSPVVADRQLEKGEREGNGRYEAKQDRQKEQNERSDTLDAAINSGVPENLRYDPTLELPIPSETVVSLSDLATKFDAAIETKGTALPTLAELGKKAKVSILRRQLEEEEKATKELEPIDDYDLSSAILGEGRPVLGIGLPYLQSCHTVIILVSLLCAFIEFPGFPLTNFPYELRDFLKQGLVAVYLINAVLAWDSIKEARKRDQSVFFWALKCFVLGALAHNELLLIREKPQNVA 391
            GRRMQISLFQITSLMAVV VHPVAAFVSSKPAFNFRSRSFYGIVNRQEITTPFRANLVGPVNPSPCRVRLKAEEASKEPEGDGGRRRKVIRKKRVRKDRSQEGGAASEA EASPPMDPRLKQAQEDIMRREFDRELVLEEFATPRVKDRVRIPTPS VVADRQLEKGEREGNGRYEAKQDRQKEQNERSDTLDAAINSGVPENLRYDPTLELPIPSETVVSLSDLATKFDAAIETKGTALPTLAELGKKAKVSILRRQLEEEEKATKELEPIDDYDLSSAILGEGRPVLGIGLPYLQSCHTVIILVSLLCAFIEFPGFPLTNFPYELRDFLKQGLVAVYLINAVLAWDSIKEARKRDQSVFFWALKCFVLGALAHNELLLIREKPQNVA
Sbjct:    1 GRRMQISLFQITSLMAVVAVHPVAAFVSSKPAFNFRSRSFYGIVNRQEITTPFRANLVGPVNPSPCRVRLKAEEASKEPEGDGGRRRKVIRKKRVRKDRSQEGGAASEAGEASPPMDPRLKQAQEDIMRREFDRELVLEEFATPRVKDRVRIPTPSAVVADRQLEKGEREGNGRYEAKQDRQKEQNERSDTLDAAINSGVPENLRYDPTLELPIPSETVVSLSDLATKFDAAIETKGTALPTLAELGKKAKVSILRRQLEEEEKATKELEPIDDYDLSSAILGEGRPVLGIGLPYLQSCHTVIILVSLLCAFIEFPGFPLTNFPYELRDFLKQGLVAVYLINAVLAWDSIKEARKRDQSVFFWALKCFVLGALAHNELLLIREKPQNVA 389          
BLAST of EWM28672.1 vs. NCBI_GenBank
Match: gi|299472618|emb|CBN78270.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 133.65 bits (335), Expect = 1.175e-31
Identity = 60/121 (49.59%), Postives = 85/121 (70.25%), Query Frame = 0
Query:  260 QLEEEEKATKELEPIDDYDLSSAILGEGRPVLGIGLPYLQSCHTVIILVSLLCAFIEFPGFPLTNFPYELRDFLKQGLVAVYLINAVLAWDSIKEARKRDQSVFFWALKCFVLGALAHNEL 380
            +L+ E  + + L   + YD  S++LGEG+P +GI   YLQS HTV++ + LLC F+E PGFPLT+ PY++R+FLK GL+  Y+INA +A+ S  EA++  Q   FWA+K FVLG L+ NEL
Sbjct:  264 ELDPEADSEEALFTTESYDAFSSVLGEGKPFVGIANSYLQSGHTVLLALVLLCGFVEIPGFPLTSLPYDVREFLKTGLLVTYVINAGIAYLSYLEAKRIGQPAGFWAVKGFVLGGLSFNEL 384          
BLAST of EWM28672.1 vs. NCBI_GenBank
Match: gi|545709735|ref|XP_005707177.1| (hypothetical protein Gasu_21150 [Galdieria sulphuraria] >gi|452823648|gb|EME30657.1| hypothetical protein Gasu_21150 [Galdieria sulphuraria])

HSP 1 Score: 101.679 bits (252), Expect = 1.569e-20
Identity = 63/205 (30.73%), Postives = 104/205 (50.73%), Query Frame = 0
Query:  180 KQDRQKEQNERSDTLDAAINSGVPENLRY--DPTLELPIPSETVVSLSDLATKFDAAIETKGTALPTLAELGKKAKVSILRRQLEEEEKATKELEPIDDYDLSSAILGEGRPVLG--IGLPYLQSCHTVIILVSLLCAFIEFPGFPLTNFPYELRDFLKQGLVAVYLINAVLAWDSIKEARKRDQSVFFWALKCFVLGALAHNEL 380
            K++  K++ E S +   +I S   ++L Y  D +   P P   +                   ++ +L E  KK +   ++   ++     K ++  D YD ++A++G GR        LPYLQS H V ++V LLC F+ +PGF LT  P   R+ L++ L  V+ +N +LA  +  EA++R+Q +  W +KC +LG LA NEL
Sbjct:  138 KKNANKDRVESSSSKLGSITSNTTKDLSYGDDASPHKPSPDFQIAE----------------DSIKSLTENFKKRRDQFVQNLEKDPNYGLKRIDEDDSYDWAAALIGRGRANKKGFFLLPYLQSGHIVCLVVVLLCTFVYYPGFYLTELPESTREVLRKSLAIVFSVNGILAGYAGWEAKRRNQPIVLWIIKCMLLGGLALNEL 326          
BLAST of EWM28672.1 vs. NCBI_GenBank
Match: gi|546311753|ref|XP_005714757.1| (unnamed protein product [Chondrus crispus] >gi|507111207|emb|CDF34938.1| unnamed protein product [Chondrus crispus])

HSP 1 Score: 100.138 bits (248), Expect = 4.485e-20
Identity = 72/170 (42.35%), Postives = 99/170 (58.24%), Query Frame = 0
Query:  223 SLSDLATKFDAAIETKGTALPT--LAEL-------GKKAKVSILRRQLEEEEKATKEL-EPIDDYDLSSAILGEGRP-VLGIG-LPYLQSCHTVIILVSLLCAFIEFPGFPLTNFPYELRDFLKQGLVAVYLINAVLAWDSIKEARKRDQSVFFWALKCFVLGALAHNEL 380
            +L D+  +    +E    ALPT  + EL       GK+A+V I   +LE++     +   P  +YDL+SAI+G G P   G+  LPYLQS H +++LV+LLC F+ +PGFPLT     LR +LK GL   Y +NA LA  + K+A+KR Q   FWALK    G +A NEL
Sbjct:  159 ALEDVKEERSIEVEEARKALPTNTIRELTQAYRKKGKEAQVLI--DELEKDPDFMFQTGNPEGEYDLTSAIIGTGSPNKQGVYVLPYLQSGHLLLLLVTLLCTFVYYPGFPLTELEDSLRGYLKVGLAITYTLNAGLAILAFKDAQKRGQPAAFWALKTAFFGNIAFNEL 326          
BLAST of EWM28672.1 vs. NCBI_GenBank
Match: gi|219110323|ref|XP_002176913.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217411448|gb|EEC51376.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 93.5893 bits (231), Expect = 5.739e-18
Identity = 60/149 (40.27%), Postives = 85/149 (57.05%), Query Frame = 0
Query:  242 LPTLAELGKKAKVSI-------LRRQLEEEEKATKELEPIDD--YDLSSAILGE-GRPVLGIGLPYLQSCHTVIILVSLLCAFIEFPGFPLTNFPYELRDFLKQGLVAVYLINAVLAWDSIKEARKRDQSVFFWALKCFVLGALAHNEL 380
            L  +AE  +K+KV I        RR LE++  A  +    ++  Y   SA+LGE  +P +GI    LQ  H V  L  LL A++E+PGFPLTN P  LRD L+ GL  +Y IN VLA  ++ +A +R Q  + W  K F +G LA+++L
Sbjct:  147 LARMAEEEEKSKVKIKRSDKEAFRRLLEQQPFADADDSFFEEEAYGTVSALLGERAKPFIGIPTGPLQVGHFVGALGLLLMAYVEYPGFPLTNLPTPLRDCLQGGLGTIYAINTVLAVLALFKAGERGQPKWLWIAKTFSVGGLAYDQL 295          
BLAST of EWM28672.1 vs. NCBI_GenBank
Match: gi|873230241|emb|CEM11341.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 94.3597 bits (233), Expect = 1.740e-17
Identity = 48/111 (43.24%), Postives = 65/111 (58.56%), Query Frame = 0
Query:  278 DLSSAILGEG----RPVLG-IGLPYLQSCHTVIILVSLLCAFIEFPGFPLTNFPYELRDFLKQGLVAVYLINAVLAWDSIKEARKRDQSVFFWALKCFVLGALAHNELLLI 383
            D   A+ GEG    +P LG I   +LQ+ H V++ V  LC  +E PG PLTN P  +R+F   GL  V+ +N VL+  SI  A  R Q  +FWA K  +LG LA++EL+ I
Sbjct:  281 DAVGAVFGEGLAPAQPFLGFIPTSFLQTGHLVLLFVVALCGLVEDPGNPLTNLPLPIRNFFVTGLGLVFAVNVVLSALSISPAIARKQPWYFWAFKTLLLGGLAYDELMQI 391          
BLAST of EWM28672.1 vs. NCBI_GenBank
Match: gi|1072231824|gb|OEU16556.1| (hypothetical protein FRACYDRAFT_239151 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 91.6633 bits (226), Expect = 5.996e-17
Identity = 47/106 (44.34%), Postives = 64/106 (60.38%), Query Frame = 0
Query:  276 DYDLSSAILGE-GRPVLGIGLPYLQSCHTVIILVSLLCAFIEFPGFPLTNFPYELRDFLKQGLVAVYLINAVLAWDSIKEARKRDQSVFFWALKCFVLGALAHNEL 380
            +Y   SA+LGE  +P +GI    LQ  H +  LV +L AFIE+PGFPLTN P  +R  L+ GL  VY IN +LA  ++ +A +R Q    W  K F +G LA ++L
Sbjct:  235 EYTFVSALLGERAKPFMGIPTGPLQVGHFIGALVIVLMAFIEYPGFPLTNLPSPIRGALQGGLGTVYGINVILAIVAVFKAGERGQPALLWIAKVFTVGGLAFDQL 340          
BLAST of EWM28672.1 vs. NCBI_GenBank
Match: gi|397590463|gb|EJK55042.1| (hypothetical protein THAOC_25274 [Thalassiosira oceanica])

HSP 1 Score: 88.9669 bits (219), Expect = 1.609e-15
Identity = 45/93 (48.39%), Postives = 59/93 (63.44%), Query Frame = 0
Query:  291 LGIGLPYLQSCHTVIILVSLLCAFIEFPGFPLTNFPYELRDFLKQGLVAVYLINAVLAWDSIKEARKRDQSVFFWALKCFVLGALAHNELLLI 383
            LGIG   LQ  H    L ++L AF+E+PGFPLTN P  LR  L+ GL  VY INAVLA  +   A +R+QS   W  K F +GA+A+++L+ I
Sbjct:  144 LGIGSGPLQVGHFFGALSAVLMAFVEYPGFPLTNLPDPLRGALQGGLATVYAINAVLAVLAFLSASERNQSPALWGAKTFAVGAIAYDQLMQI 236          
BLAST of EWM28672.1 vs. NCBI_GenBank
Match: gi|1210519249|dbj|GAX21833.1| (hypothetical protein FisN_30Hh033 [Fistulifera solaris])

HSP 1 Score: 87.0409 bits (214), Expect = 1.735e-15
Identity = 48/108 (44.44%), Postives = 66/108 (61.11%), Query Frame = 0
Query:  275 DDYDLSSAILGEGRPVLGIGLPY--LQSCHTVIILVSLLCAFIEFPGFPLTNFPYELRDFLKQGLVAVYLINAVLAWDSIKEARKRDQSVFFWALKCFVLGALAHNEL 380
            ++Y   SA+LGE R    IG+P   +Q  H +  L  LL AF+E+PGFPLTN P  LR  L+ GL  VY IN VLA  +  +AR+R Q +  W  K + +G LA+++L
Sbjct:  198 EEYTTISALLGE-RSAKFIGIPAGPIQVGHFIGALGILLMAFVEYPGFPLTNLPTPLRGALQGGLGIVYGINTVLAVAAAFQARQRGQPIPLWVAKTWAVGGLAYDQL 304          
The following BLAST results are available for this feature:
BLAST of EWM28672.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111095|gb|EWM28672.1|0.000e+0100.00hypothetical protein Naga_100002g49 [Nannochlorops... [more]
gi|553194036|ref|XP_005855879.1|0.000e+099.23hypothetical protein NGA_2005520, partial [Nannoch... [more]
gi|299472618|emb|CBN78270.1|1.175e-3149.59conserved unknown protein [Ectocarpus siliculosus][more]
gi|545709735|ref|XP_005707177.1|1.569e-2030.73hypothetical protein Gasu_21150 [Galdieria sulphur... [more]
gi|546311753|ref|XP_005714757.1|4.485e-2042.35unnamed protein product [Chondrus crispus] >gi|507... [more]
gi|219110323|ref|XP_002176913.1|5.739e-1840.27predicted protein, partial [Phaeodactylum tricornu... [more]
gi|873230241|emb|CEM11341.1|1.740e-1743.24unnamed protein product [Vitrella brassicaformis C... [more]
gi|1072231824|gb|OEU16556.1|5.996e-1744.34hypothetical protein FRACYDRAFT_239151 [Fragilario... [more]
gi|397590463|gb|EJK55042.1|1.609e-1548.39hypothetical protein THAOC_25274 [Thalassiosira oc... [more]
gi|1210519249|dbj|GAX21833.1|1.735e-1544.44hypothetical protein FisN_30Hh033 [Fistulifera sol... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1969rna1969Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications