rna1963, rna1963 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1963
Unique Name	rna1963
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1295
Alignment location	CM002458.1:582745..584012 -

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Properties


Property Name	Value
Product	Vacuolar (H )-ATPase G subunit
Orig transcript id	gnl\|cribi\|Naga_100002g55.4787.mrna
Orig protein id	gnl\|cribi\|Naga_100002g55.4787
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:582745..584012 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100002g55	gene1875	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1963	rna1963-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28668.1	cds1958	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:582745..584012-
coding sequence from alignment at CM002458.1:582745..584012-

mRNA sequence

>rna1963 ID=rna1963|Name=rna1963|organism=Nannochloropsis gaditana|type=mRNA|length=1295bp
CGTCAACTCAAGATGCAAACAGCACACCAGGCGGCTGTCATTGCAATGTT
TTGGGGGCCTGACGTCTACTTTAAGAAACTACATGTTGAGTAATCCTGTC
AATCAATCAGTCTTGTGCAGTCCATCTTTCTCACGGTCTCACACACCTAG
AGCTCATGAAAATCATACAGGGCATTTGAAAAACGCGAGACAAGGTCATG
TCTAGATTATCTGCATCCCCGTTTGTTACCAGCATACTGGCGGGAAGAGT
TGCGTTGGTGACAGGTGGCGGTTCTGGCATTGGGTTTGAGGTAGCGCGCC
AGCTAGGTCTACACGGGGCGAAGATTATCATTATGGGTCGACGAAAATCC
TTTCTGGAGAAGGCTGTAGGTTTGTTGGCACAGGAAGCCGTACAAGCGAC
ATGGGTACAAGGTGATGTACGACAATCAGAAGATGCGGACAAAGCTGTGG
AAAAAGCAGTCCACGATTTTGGCTCTCTGTCTATTCTCGTGAATGCAGCT
GCCGGAAATTTTTTGGTAGCAGGCGAAGATTTAAGCACAAAAGGATTTAG
GACCGTCATGGAAATCGATACCGTAGGGTCTTTCAACATGAGTCGCGCCG
CTTTTAAAGCGCTAAAAGTAGCAGCAGAGGGTGGGTTGATCATTAACATT
AGTGCCACATTGCACTACGGGGCGACATGGTACCAAACGCACGCTTCAGC
AGCCAAAGCTGCAGTGGACAGCCTGACACGGTCACTGGGGCTGGAGTGGG
GCAGCTTTGGGATTCGTGTCGTAGGTATTGCGCCGGGACCCATTGCCGAC
ACACCCGGCATGGCTAAGTTGGCGCCTGCTGACGATTCTTCGGCCGTGGA
CGAGCTGGTGGCTGAGATGATCCCGCTGGGCCGCATGGGAACGAAGACTG
ACATCGCGCTAGCTGCTGTCTTTTTGTGCTCGTCCGCCGGCGGCTTTATA
ACGGGCGAGACTCTGGTGGTAGACGGTGGACATTGGCTGTTCAAGCCCCA
GATGTTGCCACGGGAATTGGTCTCTGACATGTCCCGACGGGTCGAAAGCA
AAAGTCGGGCAATGACCCCATCTAATGGGCTGAGCGCCAACGCCGAGACC
ATAAGCCGACCGTCGAGTCGACTGTGAATTTGAGCGAGTCATATAGATTT
ACTAGCAAGTCGAAGGATTAAATGAGATGAGAGAAGGTATTGGAAGACAT
TATGAAAGGACTTCCGGGAGGCACCATGAGCTGGGCTAAAATTACGGGAC
GGTGGATCACGCAAAGAACACCTACAACTGTATTCCCACACAATT

protein sequence of rna1963

>rna1963-protein ID=rna1963-protein|Name=rna1963|organism=Nannochloropsis gaditana|type=polypeptide|length=223bp
MASGGMAELRAAEQKAAQIVQEARAGNNSDSDMTCPPIVDLHPVSENISC
ANLMLRCRGRDASRGQRLKEATVEARRVIEGYRDDKEKQFQDFVKTKYGS
SGSQTADLDRQTEAELAKLSADFKHNKDVVLDVLVDKVTNVKTYMTEKSA
FEFVLRDKAPPLSRVSMDGKTTTNWSAMEELPGMTRRKFSHHIGVHARVI
RVSQNKKNSRPSYKGTNCVGIQL

mRNA from alignment at CM002458.1:582745..584012-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1963 ID=rna1963|Name=rna1963|organism=Nannochloropsis gaditana|type=mRNA|length=1268bp|location=Sequence derived from alignment at CM002458.1:582745..584012- (Nannochloropsis gaditana)
ATGGCGTCCGGTGGCATGGCAGAGCTGAGAGCTGCTGAGCAGAAGGCTGC
TCAGATCGTCCAAGAGGCGCGGGCAGGTAATAATTCAGATAGTGACATGA
CATGCCCGCCAATCGTTGACTTGCATCCAGTCAGTGAAAACATATCATGC
GCAAACTTAATGCTGAGGTGTAGAGGCAGAGATGCATGTATTTGAGAGCA
TTTACCAACATGGCATGACAGAATTCTAGAGCTGTATACGTGAAAAATGC
TCCCTCGTGTCCGACCCTCTGTTCATTACTTTTCCATTTCGGCCTTCTTA
GGTCATGATTTGAATTATGATTCCGATACAATTTAGCCAAAATCGCTACA
CTTATTTATTTATTCAGCTATATAGCTGAATCTACACCTTTTTGCTCTCC
CGGACACTCGTACACAGCACGGGGCCAGCGACTCAAGGAGGCCACGGTGG
AAGCGCGCCGGGTCATTGAAGGCTACCGGGACGACAAAGAAAAACAGTTT
CAAGATTTTGTGAAAACGGTAAGATGTTGCGCTTGATCTTGAACCGAAAG
ACCGAAAGCAAATGTTAATTCCACATGCACGGGGATGTTAGTTTGAAATT
CTTCGGCAGCGCTCTATCACCTTTCAATATGTAAGAATTTCCCGCGCTCC
ATTTCTATGCTTTGTAATCCATTTATTTTTTTCTTGAATGTTGGTAGAAA
TATGGAAGCAGCGGCTCACAGACGGCAGACCTAGACAGACAAACAGAGGC
CGAACTTGCCAAGCTCAGGTATGCAAGCGGTGGGCTTCCTCCACATACCA
TATCTAGCACCATAGCACAAAATGTGGTTCACTCCATGCATAGGCCTCTG
TGCATGTCGCTTTCCAATTCTCATATATATGCATCACACATGTCCACTGA
ACTCCACAAGCGCGGACTTCAAACACAACAAAGATGTAGTGTTGGATGTG
CTTGTGGATAAAGTTACCAACGTCAAGACCGTAGTGCCTGAGGCCTGGGG
AGTGTGCACGAAGTATTGATTTGAGTATATGACAGAGAAGAGCGCGTTTG
AATTTGTCTTGCGTGATAAAGCGCCACCACTTTCGCGTGTGTCCATGGAT
GGCAAGACCACCACAAATTGGAGCGCCATGGAGGAGCTGCCTGGGATGAC
CAGGCGGAAATTTTCACATCATATAGGGGTGCATGCTCGGGTGATACGGG
TCAGCCAGAACAAAAAGAATTCAAGGCCGAGTTATAAGGGCACGAATTGT
GTGGGAATACAGTTGTAG

Coding sequence (CDS) from alignment at CM002458.1:582745..584012-

>rna1963 ID=rna1963|Name=rna1963|organism=Nannochloropsis gaditana|type=CDS|length=3360bp|location=Sequence derived from alignment at CM002458.1:582745..584012- (Nannochloropsis gaditana)
TATATGACAGAGAAGAGCGCGTTTGAATTTGTCTTGCGTGATAAAGCGCC
ACCACTTTCGCGTGTGTCCATGGATGGCAAGACCACCACAAATTGGAGCG
CCATGGAGGAGCTGCCTGGGATGACCAGGCGGAAATTTTCACATCATATA
GGGGTGCATGCTCGGGTGATACGGGTCAGCCAGAACAAAAAGAATTCAAG
GCCGAGTTATAAGGGCACGAATTGTGTGGGAATACAGTTGTAGCGCGGAC
TTCAAACACAACAAAGATGTAGTGTTGGATGTGCTTGTGGATAAAGTTAC
CAACGTCAAGACCAAATATGGAAGCAGCGGCTCACAGACGGCAGACCTAG
ACAGACAAACAGAGGCCGAACTTGCCAAGCTCAGCACGGGGCCAGCGACT
CAAGGAGGCCACGGTGGAAGCGCGCCGGGTCATTGAAGGCTACCGGGACG
ACAAAGAAAAACAGTTTCAAGATTTTGTGAAAACGATGGCGTCCGGTGGC
ATGGCAGAGCTGAGAGCTGCTGAGCAGAAGGCTGCTCAGATCGTCCAAGA
GGCGCGGGCAGGTAATAATTCAGATAGTGACATGACATGCCCGCCAATCG
TTGACTTGCATCCAGTCAGTGAAAACATATCATGCGCAAACTTAATGCTG
AGGTGTAGAGGCAGAGATGCATTATATGACAGAGAAGAGCGCGTTTGAAT
TTGTCTTGCGTGATAAAGCGCCACCACTTTCGCGTGTGTCCATGGATGGC
AAGACCACCACAAATTGGAGCGCCATGGAGGAGCTGCCTGGGATGACCAG
GCGGAAATTTTCACATCATATAGGGGTGCATGCTCGGGTGATACGGGTCA
GCCAGAACAAAAAGAATTCAAGGCCGAGTTATAAGGGCACGAATTGTGTG
GGAATACAGTTGTAGCGCGGACTTCAAACACAACAAAGATGTAGTGTTGG
ATGTGCTTGTGGATAAAGTTACCAACGTCAAGACCAAATATGGAAGCAGC
GGCTCACAGACGGCAGACCTAGACAGACAAACAGAGGCCGAACTTGCCAA
GCTCAGCACGGGGCCAGCGACTCAAGGAGGCCACGGTGGAAGCGCGCCGG
GTCATTGAAGGCTACCGGGACGACAAAGAAAAACAGTTTCAAGATTTTGT
GAAAACGATGGCGTCCGGTGGCATGGCAGAGCTGAGAGCTGCTGAGCAGA
AGGCTGCTCAGATCGTCCAAGAGGCGCGGGCAGGTAATAATTCAGATAGT
GACATGACATGCCCGCCAATCGTTGACTTGCATCCAGTCAGTGAAAACAT
ATCATGCGCAAACTTAATGCTGAGGTGTAGAGGCAGAGATGCATTATATG
ACAGAGAAGAGCGCGTTTGAATTTGTCTTGCGTGATAAAGCGCCACCACT
TTCGCGTGTGTCCATGGATGGCAAGACCACCACAAATTGGAGCGCCATGG
AGGAGCTGCCTGGGATGACCAGGCGGAAATTTTCACATCATATAGGGGTG
CATGCTCGGGTGATACGGGTCAGCCAGAACAAAAAGAATTCAAGGCCGAG
TTATAAGGGCACGAATTGTGTGGGAATACAGTTGTAGCGCGGACTTCAAA
CACAACAAAGATGTAGTGTTGGATGTGCTTGTGGATAAAGTTACCAACGT
CAAGACCAAATATGGAAGCAGCGGCTCACAGACGGCAGACCTAGACAGAC
AAACAGAGGCCGAACTTGCCAAGCTCAGCACGGGGCCAGCGACTCAAGGA
GGCCACGGTGGAAGCGCGCCGGGTCATTGAAGGCTACCGGGACGACAAAG
AAAAACAGTTTCAAGATTTTGTGAAAACGATGGCGTCCGGTGGCATGGCA
GAGCTGAGAGCTGCTGAGCAGAAGGCTGCTCAGATCGTCCAAGAGGCGCG
GGCAGGTAATAATTCAGATAGTGACATGACATGCCCGCCAATCGTTGACT
TGCATCCAGTCAGTGAAAACATATCATGCGCAAACTTAATGCTGAGGTGT
AGAGGCAGAGATGCATTATATGACAGAGAAGAGCGCGTTTGAATTTGTCT
TGCGTGATAAAGCGCCACCACTTTCGCGTGTGTCCATGGATGGCAAGACC
ACCACAAATTGGAGCGCCATGGAGGAGCTGCCTGGGATGACCAGGCGGAA
ATTTTCACATCATATAGGGGTGCATGCTCGGGTGATACGGGTCAGCCAGA
ACAAAAAGAATTCAAGGCCGAGTTATAAGGGCACGAATTGTGTGGGAATA
CAGTTGTAGCGCGGACTTCAAACACAACAAAGATGTAGTGTTGGATGTGC
TTGTGGATAAAGTTACCAACGTCAAGACCAAATATGGAAGCAGCGGCTCA
CAGACGGCAGACCTAGACAGACAAACAGAGGCCGAACTTGCCAAGCTCAG
CACGGGGCCAGCGACTCAAGGAGGCCACGGTGGAAGCGCGCCGGGTCATT
GAAGGCTACCGGGACGACAAAGAAAAACAGTTTCAAGATTTTGTGAAAAC
GATGGCGTCCGGTGGCATGGCAGAGCTGAGAGCTGCTGAGCAGAAGGCTG
CTCAGATCGTCCAAGAGGCGCGGGCAGGTAATAATTCAGATAGTGACATG
ACATGCCCGCCAATCGTTGACTTGCATCCAGTCAGTGAAAACATATCATG
CGCAAACTTAATGCTGAGGTGTAGAGGCAGAGATGCATTATATGACAGAG
AAGAGCGCGTTTGAATTTGTCTTGCGTGATAAAGCGCCACCACTTTCGCG
TGTGTCCATGGATGGCAAGACCACCACAAATTGGAGCGCCATGGAGGAGC
TGCCTGGGATGACCAGGCGGAAATTTTCACATCATATAGGGGTGCATGCT
CGGGTGATACGGGTCAGCCAGAACAAAAAGAATTCAAGGCCGAGTTATAA
GGGCACGAATTGTGTGGGAATACAGTTGTAGCGCGGACTTCAAACACAAC
AAAGATGTAGTGTTGGATGTGCTTGTGGATAAAGTTACCAACGTCAAGAC
CAAATATGGAAGCAGCGGCTCACAGACGGCAGACCTAGACAGACAAACAG
AGGCCGAACTTGCCAAGCTCAGCACGGGGCCAGCGACTCAAGGAGGCCAC
GGTGGAAGCGCGCCGGGTCATTGAAGGCTACCGGGACGACAAAGAAAAAC
AGTTTCAAGATTTTGTGAAAACGATGGCGTCCGGTGGCATGGCAGAGCTG
AGAGCTGCTGAGCAGAAGGCTGCTCAGATCGTCCAAGAGGCGCGGGCAGG
TAATAATTCAGATAGTGACATGACATGCCCGCCAATCGTTGACTTGCATC
CAGTCAGTGAAAACATATCATGCGCAAACTTAATGCTGAGGTGTAGAGGC
AGAGATGCAT

Synonyms

Publications