EWM28668.1, cds1958 (CDS) Nannochloropsis gaditana

Overview
NameEWM28668.1
Unique Namecds1958
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:583826..584012 -
Alignment locationCM002458.1:583495..583595 -
Alignment locationCM002458.1:583245..583315 -
Alignment locationCM002458.1:583033..583102 -
Alignment locationCM002458.1:582745..582987 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28668.1
ProductVacuolar (H )-ATPase G subunit
Orig transcript idgnl|cribi|Naga_100002g55.4787.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:583826..584012 -
CM002458.1supercontigCM002458.1:583495..583595 -
CM002458.1supercontigCM002458.1:583245..583315 -
CM002458.1supercontigCM002458.1:583033..583102 -
CM002458.1supercontigCM002458.1:582745..582987 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
Vocabulary: Molecular Function
TermDefinition
GO:0005215transporter activity
Vocabulary: Cellular Component
TermDefinition
GO:0005773vacuole
GO:0016020membrane
GO:0016471vacuolar proton-transporting V-type ATPase complex
Vocabulary: INTERPRO
TermDefinition
IPR005124V-ATPase_G
Homology
BLAST of EWM28668.1 vs. NCBI_GenBank
Match: gi|585111091|gb|EWM28668.1| (Vacuolar (H+)-ATPase G subunit [Nannochloropsis gaditana])

HSP 1 Score: 468.003 bits (1203), Expect = 4.401e-167
Identity = 223/223 (100.00%), Postives = 223/223 (100.00%), Query Frame = 0
Query:    1 MASGGMAELRAAEQKAAQIVQEARAGNNSDSDMTCPPIVDLHPVSENISCANLMLRCRGRDASRGQRLKEATVEARRVIEGYRDDKEKQFQDFVKTKYGSSGSQTADLDRQTEAELAKLSADFKHNKDVVLDVLVDKVTNVKTYMTEKSAFEFVLRDKAPPLSRVSMDGKTTTNWSAMEELPGMTRRKFSHHIGVHARVIRVSQNKKNSRPSYKGTNCVGIQL 223
            MASGGMAELRAAEQKAAQIVQEARAGNNSDSDMTCPPIVDLHPVSENISCANLMLRCRGRDASRGQRLKEATVEARRVIEGYRDDKEKQFQDFVKTKYGSSGSQTADLDRQTEAELAKLSADFKHNKDVVLDVLVDKVTNVKTYMTEKSAFEFVLRDKAPPLSRVSMDGKTTTNWSAMEELPGMTRRKFSHHIGVHARVIRVSQNKKNSRPSYKGTNCVGIQL
Sbjct:    1 MASGGMAELRAAEQKAAQIVQEARAGNNSDSDMTCPPIVDLHPVSENISCANLMLRCRGRDASRGQRLKEATVEARRVIEGYRDDKEKQFQDFVKTKYGSSGSQTADLDRQTEAELAKLSADFKHNKDVVLDVLVDKVTNVKTYMTEKSAFEFVLRDKAPPLSRVSMDGKTTTNWSAMEELPGMTRRKFSHHIGVHARVIRVSQNKKNSRPSYKGTNCVGIQL 223          
BLAST of EWM28668.1 vs. NCBI_GenBank
Match: gi|1210526727|dbj|GAX14375.1| (V-type H+-transporting ATPase subunit G [Fistulifera solaris])

HSP 1 Score: 67.781 bits (164), Expect = 5.630e-11
Identity = 43/137 (31.39%), Postives = 65/137 (47.45%), Query Frame = 0
Query:    5 GMAELRAAEQKAAQIVQEARAGNNSDSDMTCPPIVDLHPVSENISCANLMLRCRGRDASRGQRLKEATVEARRVIEGYRDDKEKQFQDFVKTKYGSSGSQTADLDRQTEAELAKLSADFKHNKDVVLDVLVDKVTNV 141
            G+ EL AAE +A+QIV EAR G                                     RG R+K+A VEA+ +I+ YR +K+++F + V +  GS G+ +A L  +T  E+  + A F+ N    +DVL+ K   V
Sbjct:    7 GIKELMAAETRASQIVAEARTG-------------------------------------RGDRMKQAKVEAQSLIDAYRGEKQEEFNNMVLSTGGSQGNASAKLQAETAKEIKAMEASFQKNAQKAIDVLLSKCCEV 106          
BLAST of EWM28668.1 vs. NCBI_GenBank
Match: gi|673528941|emb|CDI55216.1| (probable vacuolar atp synthase subunit g (vma-10) [Melanopsichium pennsylvanicum 4])

HSP 1 Score: 66.6254 bits (161), Expect = 1.190e-10
Identity = 34/82 (41.46%), Postives = 54/82 (65.85%), Query Frame = 0
Query:   64 RGQRLKEATVEARRVIEGYRDDKEKQFQDFVKTKYGSSGSQTADLDRQTEAELAKLSADFKHNKDVVLDVLVDKVTNVKTYM 145
            R Q+LK+A  EA + IE  + +KEK+F DF K   GS+ S    +D++TE +L +L+  F+ N+D V++ L+D+V  VKT +
Sbjct:   30 RTQKLKDARNEASKEIEQLKSNKEKEFSDFQKEHEGSTSSSQTTVDKETEQKLEQLNKAFESNRDQVIEKLLDRVVEVKTEL 111          
BLAST of EWM28668.1 vs. NCBI_GenBank
Match: gi|1210531498|dbj|GAX09854.1| (V-type H+-transporting ATPase subunit G [Fistulifera solaris])

HSP 1 Score: 65.855 bits (159), Expect = 2.568e-10
Identity = 42/137 (30.66%), Postives = 64/137 (46.72%), Query Frame = 0
Query:    5 GMAELRAAEQKAAQIVQEARAGNNSDSDMTCPPIVDLHPVSENISCANLMLRCRGRDASRGQRLKEATVEARRVIEGYRDDKEKQFQDFVKTKYGSSGSQTADLDRQTEAELAKLSADFKHNKDVVLDVLVDKVTNV 141
            G+ EL AAE +A+QIV EAR G                                     RG R+K+A VEA+ +I+ YR +K+++F + V +  GS G+ +A L  +T  E+  +   F+ N    +DVL+ K   V
Sbjct:    7 GIKELMAAETRASQIVAEARTG-------------------------------------RGDRMKQAKVEAQSLIDAYRGEKQEEFNNMVLSTGGSQGNASAKLQAETAKEIKAMEVSFQKNAQKAIDVLLSKCCEV 106          
BLAST of EWM28668.1 vs. NCBI_GenBank
Match: gi|808373285|ref|XP_012191668.1| (hypothetical protein PHSY_005670 [Pseudozyma hubeiensis SY62] >gi|501309223|dbj|GAC98081.1| hypothetical protein PHSY_005670 [Pseudozyma hubeiensis SY62])

HSP 1 Score: 66.6254 bits (161), Expect = 4.636e-10
Identity = 46/143 (32.17%), Postives = 70/143 (48.95%), Query Frame = 0
Query:    3 SGGMAELRAAEQKAAQIVQEARAGNNSDSDMTCPPIVDLHPVSENISCANLMLRCRGRDASRGQRLKEATVEARRVIEGYRDDKEKQFQDFVKTKYGSSGSQTADLDRQTEAELAKLSADFKHNKDVVLDVLVDKVTNVKTYM 145
            S G+  L  AE++AA+IVQ+AR                                       R Q+LK+A  EA + IE  +  KEK+F DF K   GS+ S    +D++TE +L +L+  F+ N+D V+  L+D+V +VKT +
Sbjct:   68 SQGIQTLLEAEKEAAKIVQKART-------------------------------------YRTQKLKDARSEASKEIEQLKSKKEKEFNDFQKEHEGSTSSSQTTVDKETEQKLEELNKAFESNRDEVIKKLLDRVVDVKTEL 173          
BLAST of EWM28668.1 vs. NCBI_GenBank
Match: gi|955487164|ref|XP_014655470.1| (v-type ATPase [Moesziomyces antarcticus] >gi|674218203|dbj|GAK66225.1| v-type ATPase [Moesziomyces antarcticus])

HSP 1 Score: 67.3958 bits (163), Expect = 5.241e-10
Identity = 46/143 (32.17%), Postives = 70/143 (48.95%), Query Frame = 0
Query:    3 SGGMAELRAAEQKAAQIVQEARAGNNSDSDMTCPPIVDLHPVSENISCANLMLRCRGRDASRGQRLKEATVEARRVIEGYRDDKEKQFQDFVKTKYGSSGSQTADLDRQTEAELAKLSADFKHNKDVVLDVLVDKVTNVKTYM 145
            S G+  L  AE++AA+IVQ+AR                                       R Q+LK+A  EA + IE  + +KEK+F DF K   GS+ S    +D++TE  L +L+  F+ N+D V+  L+D+V +VKT +
Sbjct:  115 SQGIQTLLEAEKEAAKIVQKART-------------------------------------YRTQKLKDARNEASKEIEQLKANKEKEFADFQKQHEGSTNSSQTTVDKETEERLGELNKAFEANRDQVISKLLDRVVDVKTEL 220          
BLAST of EWM28668.1 vs. NCBI_GenBank
Match: gi|1003331239|emb|CDU22249.1| (probable vacuolar ATP synthase subunit G (VMA-10) [Sporisorium scitamineum])

HSP 1 Score: 64.6994 bits (156), Expect = 6.588e-10
Identity = 45/143 (31.47%), Postives = 71/143 (49.65%), Query Frame = 0
Query:    3 SGGMAELRAAEQKAAQIVQEARAGNNSDSDMTCPPIVDLHPVSENISCANLMLRCRGRDASRGQRLKEATVEARRVIEGYRDDKEKQFQDFVKTKYGSSGSQTADLDRQTEAELAKLSADFKHNKDVVLDVLVDKVTNVKTYM 145
            S G+  L  AE++AA+IVQ+AR                                       R Q+LK+A  EA + IE  +  KEK+F DF K   GS+ S    +D++TE +L +L+  F+ N++ V++ L+D+V +VKT +
Sbjct:    6 SQGIQTLLEAEKEAAKIVQKART-------------------------------------YRTQKLKDARSEASKEIEQLKSKKEKEFNDFQKEHEGSTSSSQTTVDKETEQKLEELNKAFESNREQVINKLLDRVVDVKTEL 111          
BLAST of EWM28668.1 vs. NCBI_GenBank
Match: gi|758983393|ref|XP_011391055.1| (putative vacuolar atp synthase subunit g (vma-10) [Ustilago maydis 521] >gi|757944765|gb|KIS67241.1| putative vacuolar atp synthase subunit g (vma-10) [Ustilago maydis 521])

HSP 1 Score: 64.3142 bits (155), Expect = 9.014e-10
Identity = 46/143 (32.17%), Postives = 70/143 (48.95%), Query Frame = 0
Query:    3 SGGMAELRAAEQKAAQIVQEARAGNNSDSDMTCPPIVDLHPVSENISCANLMLRCRGRDASRGQRLKEATVEARRVIEGYRDDKEKQFQDFVKTKYGSSGSQTADLDRQTEAELAKLSADFKHNKDVVLDVLVDKVTNVKTYM 145
            S G+  L  AE++AA+IVQ+AR                                       R Q+LK+A  EA + IE  + +KEK+F DF K   GS+ S    +D++TE +L +L+  F  N+D V+  L+D+V +VKT +
Sbjct:    6 SQGIQTLLEAEKEAAKIVQKART-------------------------------------YRTQKLKDARSEASKEIEQLKSNKEKEFNDFQKEHEGSTSSSQTTVDKETEQKLEELNKAFDANRDQVIAKLLDRVVDVKTEL 111          
BLAST of EWM28668.1 vs. NCBI_GenBank
Match: gi|326527001|dbj|BAK00889.1| (predicted protein [Hordeum vulgare subsp. vulgare])

HSP 1 Score: 63.929 bits (154), Expect = 1.029e-9
Identity = 34/82 (41.46%), Postives = 53/82 (64.63%), Query Frame = 0
Query:   64 RGQRLKEATVEARRVIEGYRDDKEKQFQDFVKTKYGSSGSQTADLDRQTEAELAKLSADFKHNKDVVLDVLVDKVTNVKTYM 145
            R Q+LK+A  EA + IE  + +KEK+F DF K   GS+ S    +D++TE  L +L+  F+ N+D V+  L+D+V +VKT +
Sbjct:   30 RTQKLKDARNEASKEIEQLKANKEKEFADFQKQHEGSTNSSQTTVDKETEERLGELNKAFEANRDQVISKLLDRVVDVKTEL 111          
BLAST of EWM28668.1 vs. NCBI_GenBank
Match: gi|443897015|dbj|GAC74357.1| (vacuolar H+-ATPase V1 sector, subunit G [Moesziomyces antarcticus T-34])

HSP 1 Score: 66.6254 bits (161), Expect = 1.072e-9
Identity = 46/143 (32.17%), Postives = 70/143 (48.95%), Query Frame = 0
Query:    3 SGGMAELRAAEQKAAQIVQEARAGNNSDSDMTCPPIVDLHPVSENISCANLMLRCRGRDASRGQRLKEATVEARRVIEGYRDDKEKQFQDFVKTKYGSSGSQTADLDRQTEAELAKLSADFKHNKDVVLDVLVDKVTNVKTYM 145
            S G+  L  AE++AA+IVQ+AR                                       R Q+LK+A  EA + IE  + +KEK+F DF K   GS+ S    +D++TE  L +L+  F+ N+D V+  L+D+V +VKT +
Sbjct:  135 SQGIQTLLEAEKEAAKIVQKART-------------------------------------YRTQKLKDARNEASKEIEQLKANKEKEFADFQKQHEGSTNSSQTTVDKETEERLGELNKAFEANRDQVISKLLDRVVDVKTEL 240          
The following BLAST results are available for this feature:
BLAST of EWM28668.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111091|gb|EWM28668.1|4.401e-167100.00Vacuolar (H+)-ATPase G subunit [Nannochloropsis ga... [more]
gi|1210526727|dbj|GAX14375.1|5.630e-1131.39V-type H+-transporting ATPase subunit G [Fistulife... [more]
gi|673528941|emb|CDI55216.1|1.190e-1041.46probable vacuolar atp synthase subunit g (vma-10) ... [more]
gi|1210531498|dbj|GAX09854.1|2.568e-1030.66V-type H+-transporting ATPase subunit G [Fistulife... [more]
gi|808373285|ref|XP_012191668.1|4.636e-1032.17hypothetical protein PHSY_005670 [Pseudozyma hubei... [more]
gi|955487164|ref|XP_014655470.1|5.241e-1032.17v-type ATPase [Moesziomyces antarcticus] >gi|67421... [more]
gi|1003331239|emb|CDU22249.1|6.588e-1031.47probable vacuolar ATP synthase subunit G (VMA-10) ... [more]
gi|758983393|ref|XP_011391055.1|9.014e-1032.17putative vacuolar atp synthase subunit g (vma-10) ... [more]
gi|326527001|dbj|BAK00889.1|1.029e-941.46predicted protein [Hordeum vulgare subsp. vulgare][more]
gi|443897015|dbj|GAC74357.1|1.072e-932.17vacuolar H+-ATPase V1 sector, subunit G [Moesziomy... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1963rna1963Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications