EWM28668.1, cds1958 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28668.1 vs. NCBI_GenBank
Match: gi|585111091|gb|EWM28668.1| (Vacuolar (H+)-ATPase G subunit [Nannochloropsis gaditana]) HSP 1 Score: 468.003 bits (1203), Expect = 4.401e-167 Identity = 223/223 (100.00%), Postives = 223/223 (100.00%), Query Frame = 0
Query: 1 MASGGMAELRAAEQKAAQIVQEARAGNNSDSDMTCPPIVDLHPVSENISCANLMLRCRGRDASRGQRLKEATVEARRVIEGYRDDKEKQFQDFVKTKYGSSGSQTADLDRQTEAELAKLSADFKHNKDVVLDVLVDKVTNVKTYMTEKSAFEFVLRDKAPPLSRVSMDGKTTTNWSAMEELPGMTRRKFSHHIGVHARVIRVSQNKKNSRPSYKGTNCVGIQL 223
MASGGMAELRAAEQKAAQIVQEARAGNNSDSDMTCPPIVDLHPVSENISCANLMLRCRGRDASRGQRLKEATVEARRVIEGYRDDKEKQFQDFVKTKYGSSGSQTADLDRQTEAELAKLSADFKHNKDVVLDVLVDKVTNVKTYMTEKSAFEFVLRDKAPPLSRVSMDGKTTTNWSAMEELPGMTRRKFSHHIGVHARVIRVSQNKKNSRPSYKGTNCVGIQL
Sbjct: 1 MASGGMAELRAAEQKAAQIVQEARAGNNSDSDMTCPPIVDLHPVSENISCANLMLRCRGRDASRGQRLKEATVEARRVIEGYRDDKEKQFQDFVKTKYGSSGSQTADLDRQTEAELAKLSADFKHNKDVVLDVLVDKVTNVKTYMTEKSAFEFVLRDKAPPLSRVSMDGKTTTNWSAMEELPGMTRRKFSHHIGVHARVIRVSQNKKNSRPSYKGTNCVGIQL 223
BLAST of EWM28668.1 vs. NCBI_GenBank
Match: gi|1210526727|dbj|GAX14375.1| (V-type H+-transporting ATPase subunit G [Fistulifera solaris]) HSP 1 Score: 67.781 bits (164), Expect = 5.630e-11 Identity = 43/137 (31.39%), Postives = 65/137 (47.45%), Query Frame = 0
Query: 5 GMAELRAAEQKAAQIVQEARAGNNSDSDMTCPPIVDLHPVSENISCANLMLRCRGRDASRGQRLKEATVEARRVIEGYRDDKEKQFQDFVKTKYGSSGSQTADLDRQTEAELAKLSADFKHNKDVVLDVLVDKVTNV 141
G+ EL AAE +A+QIV EAR G RG R+K+A VEA+ +I+ YR +K+++F + V + GS G+ +A L +T E+ + A F+ N +DVL+ K V
Sbjct: 7 GIKELMAAETRASQIVAEARTG-------------------------------------RGDRMKQAKVEAQSLIDAYRGEKQEEFNNMVLSTGGSQGNASAKLQAETAKEIKAMEASFQKNAQKAIDVLLSKCCEV 106
BLAST of EWM28668.1 vs. NCBI_GenBank
Match: gi|673528941|emb|CDI55216.1| (probable vacuolar atp synthase subunit g (vma-10) [Melanopsichium pennsylvanicum 4]) HSP 1 Score: 66.6254 bits (161), Expect = 1.190e-10 Identity = 34/82 (41.46%), Postives = 54/82 (65.85%), Query Frame = 0
Query: 64 RGQRLKEATVEARRVIEGYRDDKEKQFQDFVKTKYGSSGSQTADLDRQTEAELAKLSADFKHNKDVVLDVLVDKVTNVKTYM 145
R Q+LK+A EA + IE + +KEK+F DF K GS+ S +D++TE +L +L+ F+ N+D V++ L+D+V VKT +
Sbjct: 30 RTQKLKDARNEASKEIEQLKSNKEKEFSDFQKEHEGSTSSSQTTVDKETEQKLEQLNKAFESNRDQVIEKLLDRVVEVKTEL 111
BLAST of EWM28668.1 vs. NCBI_GenBank
Match: gi|1210531498|dbj|GAX09854.1| (V-type H+-transporting ATPase subunit G [Fistulifera solaris]) HSP 1 Score: 65.855 bits (159), Expect = 2.568e-10 Identity = 42/137 (30.66%), Postives = 64/137 (46.72%), Query Frame = 0
Query: 5 GMAELRAAEQKAAQIVQEARAGNNSDSDMTCPPIVDLHPVSENISCANLMLRCRGRDASRGQRLKEATVEARRVIEGYRDDKEKQFQDFVKTKYGSSGSQTADLDRQTEAELAKLSADFKHNKDVVLDVLVDKVTNV 141
G+ EL AAE +A+QIV EAR G RG R+K+A VEA+ +I+ YR +K+++F + V + GS G+ +A L +T E+ + F+ N +DVL+ K V
Sbjct: 7 GIKELMAAETRASQIVAEARTG-------------------------------------RGDRMKQAKVEAQSLIDAYRGEKQEEFNNMVLSTGGSQGNASAKLQAETAKEIKAMEVSFQKNAQKAIDVLLSKCCEV 106
BLAST of EWM28668.1 vs. NCBI_GenBank
Match: gi|808373285|ref|XP_012191668.1| (hypothetical protein PHSY_005670 [Pseudozyma hubeiensis SY62] >gi|501309223|dbj|GAC98081.1| hypothetical protein PHSY_005670 [Pseudozyma hubeiensis SY62]) HSP 1 Score: 66.6254 bits (161), Expect = 4.636e-10 Identity = 46/143 (32.17%), Postives = 70/143 (48.95%), Query Frame = 0
Query: 3 SGGMAELRAAEQKAAQIVQEARAGNNSDSDMTCPPIVDLHPVSENISCANLMLRCRGRDASRGQRLKEATVEARRVIEGYRDDKEKQFQDFVKTKYGSSGSQTADLDRQTEAELAKLSADFKHNKDVVLDVLVDKVTNVKTYM 145
S G+ L AE++AA+IVQ+AR R Q+LK+A EA + IE + KEK+F DF K GS+ S +D++TE +L +L+ F+ N+D V+ L+D+V +VKT +
Sbjct: 68 SQGIQTLLEAEKEAAKIVQKART-------------------------------------YRTQKLKDARSEASKEIEQLKSKKEKEFNDFQKEHEGSTSSSQTTVDKETEQKLEELNKAFESNRDEVIKKLLDRVVDVKTEL 173
BLAST of EWM28668.1 vs. NCBI_GenBank
Match: gi|955487164|ref|XP_014655470.1| (v-type ATPase [Moesziomyces antarcticus] >gi|674218203|dbj|GAK66225.1| v-type ATPase [Moesziomyces antarcticus]) HSP 1 Score: 67.3958 bits (163), Expect = 5.241e-10 Identity = 46/143 (32.17%), Postives = 70/143 (48.95%), Query Frame = 0
Query: 3 SGGMAELRAAEQKAAQIVQEARAGNNSDSDMTCPPIVDLHPVSENISCANLMLRCRGRDASRGQRLKEATVEARRVIEGYRDDKEKQFQDFVKTKYGSSGSQTADLDRQTEAELAKLSADFKHNKDVVLDVLVDKVTNVKTYM 145
S G+ L AE++AA+IVQ+AR R Q+LK+A EA + IE + +KEK+F DF K GS+ S +D++TE L +L+ F+ N+D V+ L+D+V +VKT +
Sbjct: 115 SQGIQTLLEAEKEAAKIVQKART-------------------------------------YRTQKLKDARNEASKEIEQLKANKEKEFADFQKQHEGSTNSSQTTVDKETEERLGELNKAFEANRDQVISKLLDRVVDVKTEL 220
BLAST of EWM28668.1 vs. NCBI_GenBank
Match: gi|1003331239|emb|CDU22249.1| (probable vacuolar ATP synthase subunit G (VMA-10) [Sporisorium scitamineum]) HSP 1 Score: 64.6994 bits (156), Expect = 6.588e-10 Identity = 45/143 (31.47%), Postives = 71/143 (49.65%), Query Frame = 0
Query: 3 SGGMAELRAAEQKAAQIVQEARAGNNSDSDMTCPPIVDLHPVSENISCANLMLRCRGRDASRGQRLKEATVEARRVIEGYRDDKEKQFQDFVKTKYGSSGSQTADLDRQTEAELAKLSADFKHNKDVVLDVLVDKVTNVKTYM 145
S G+ L AE++AA+IVQ+AR R Q+LK+A EA + IE + KEK+F DF K GS+ S +D++TE +L +L+ F+ N++ V++ L+D+V +VKT +
Sbjct: 6 SQGIQTLLEAEKEAAKIVQKART-------------------------------------YRTQKLKDARSEASKEIEQLKSKKEKEFNDFQKEHEGSTSSSQTTVDKETEQKLEELNKAFESNREQVINKLLDRVVDVKTEL 111
BLAST of EWM28668.1 vs. NCBI_GenBank
Match: gi|758983393|ref|XP_011391055.1| (putative vacuolar atp synthase subunit g (vma-10) [Ustilago maydis 521] >gi|757944765|gb|KIS67241.1| putative vacuolar atp synthase subunit g (vma-10) [Ustilago maydis 521]) HSP 1 Score: 64.3142 bits (155), Expect = 9.014e-10 Identity = 46/143 (32.17%), Postives = 70/143 (48.95%), Query Frame = 0
Query: 3 SGGMAELRAAEQKAAQIVQEARAGNNSDSDMTCPPIVDLHPVSENISCANLMLRCRGRDASRGQRLKEATVEARRVIEGYRDDKEKQFQDFVKTKYGSSGSQTADLDRQTEAELAKLSADFKHNKDVVLDVLVDKVTNVKTYM 145
S G+ L AE++AA+IVQ+AR R Q+LK+A EA + IE + +KEK+F DF K GS+ S +D++TE +L +L+ F N+D V+ L+D+V +VKT +
Sbjct: 6 SQGIQTLLEAEKEAAKIVQKART-------------------------------------YRTQKLKDARSEASKEIEQLKSNKEKEFNDFQKEHEGSTSSSQTTVDKETEQKLEELNKAFDANRDQVIAKLLDRVVDVKTEL 111
BLAST of EWM28668.1 vs. NCBI_GenBank
Match: gi|326527001|dbj|BAK00889.1| (predicted protein [Hordeum vulgare subsp. vulgare]) HSP 1 Score: 63.929 bits (154), Expect = 1.029e-9 Identity = 34/82 (41.46%), Postives = 53/82 (64.63%), Query Frame = 0
Query: 64 RGQRLKEATVEARRVIEGYRDDKEKQFQDFVKTKYGSSGSQTADLDRQTEAELAKLSADFKHNKDVVLDVLVDKVTNVKTYM 145
R Q+LK+A EA + IE + +KEK+F DF K GS+ S +D++TE L +L+ F+ N+D V+ L+D+V +VKT +
Sbjct: 30 RTQKLKDARNEASKEIEQLKANKEKEFADFQKQHEGSTNSSQTTVDKETEERLGELNKAFEANRDQVISKLLDRVVDVKTEL 111
BLAST of EWM28668.1 vs. NCBI_GenBank
Match: gi|443897015|dbj|GAC74357.1| (vacuolar H+-ATPase V1 sector, subunit G [Moesziomyces antarcticus T-34]) HSP 1 Score: 66.6254 bits (161), Expect = 1.072e-9 Identity = 46/143 (32.17%), Postives = 70/143 (48.95%), Query Frame = 0
Query: 3 SGGMAELRAAEQKAAQIVQEARAGNNSDSDMTCPPIVDLHPVSENISCANLMLRCRGRDASRGQRLKEATVEARRVIEGYRDDKEKQFQDFVKTKYGSSGSQTADLDRQTEAELAKLSADFKHNKDVVLDVLVDKVTNVKTYM 145
S G+ L AE++AA+IVQ+AR R Q+LK+A EA + IE + +KEK+F DF K GS+ S +D++TE L +L+ F+ N+D V+ L+D+V +VKT +
Sbjct: 135 SQGIQTLLEAEKEAAKIVQKART-------------------------------------YRTQKLKDARNEASKEIEQLKANKEKEFADFQKQHEGSTNSSQTTVDKETEERLGELNKAFEANRDQVISKLLDRVVDVKTEL 240 The following BLAST results are available for this feature:
BLAST of EWM28668.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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