rna1961, rna1961 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1961
Unique Name	rna1961
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1292
Alignment location	CM002458.1:578411..580763 -

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Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100002g57.4820.mrna
Orig protein id	gnl\|cribi\|Naga_100002g57.4820
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:578411..580763 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100002g57	gene1873	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1961	rna1961-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28701.1	cds1956	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:578411..580763-
coding sequence from alignment at CM002458.1:578411..580763-

mRNA sequence

>rna1961 ID=rna1961|Name=rna1961|organism=Nannochloropsis gaditana|type=mRNA|length=1292bp
AGGCATCATTCGCCGGACTGGGCAAGACTACAAATAGCCATCAAGGTTGT
TTCTTATTATTCTTCATCTTCGTTTTTTTTAATGATGACGAAGTATGCTC
TACCATGGGCGCGGCTCTGTTTCCTTCCCCCCAAAGAAGCTTTTTGAGAC
CGGCCACGCACGCTCTAGCTAATCAAGGCTCTAAGGGGAAAAAGTCGCAC
GCTTTCGGGAAAAACTCACAATTATTCTATCCACTTCTCAAATTTGTCGT
AGGCATAATCGCTGAGTATGTTTCGCGGTCAAGGCGGCGTCGTGGGCCTC
TTGCGATTTAGTTGTGCAGCTCCAATGCGCTCTCCTGTCTGTGGTCTCAC
ATGGATCAGACCCACAGCAACTTTGTCCAGTCATGAACAAAGTCGCCTTT
GCTTTGTATCGGCTAGTCCTCAGCGGTATTTGGCGTTCAAAACACACATT
CATGCAGATTTTGGTGGCCCGCACGCGAGGATACGGCGGGCCGATCGTCT
AGATGCTCTGGACGATTTTTACGTCACAAGGAGAGCCCCTAATCTTTCAC
TAGGCCTTTTTCACATCAGTCATCGCCTTGCAGGTTCCAATACGCGGTTG
GGCAGCGGCACTAGCAGTGGCGAAAGGAGCAGCAGCACCACCTGCAATGG
TCGTGATATTGAGAGCAAGGGCAATTTAAGGAGCCAAGGCGAAGGGGGTG
CCGCACCTGCTGGAATGGGAACGGAAAGTACCAGGCCTCAAGAAGATGTC
AATAAAATGGGAAAGCTGCGTTTGATGGTTAAGCGATATGGAGCAGTCGC
CGTGATAACATATCTTGGCGTGTATGTCGTGACACTTAGTGCACTCTTTG
CAGCGGTGGAGTCAGGTCTTACCCCTTTCGACTACGGTTTGGACTCGAAC
TGGCTGGTGGAGAAAGCCACGCACCTCCTAGAGAATTATTCTTGGAGTGA
GCCGCTTGTTGAAACCATACAAACTAACCCGCATGCGGGTAACTTTGCCG
TAGCTTGGGTCCTTACGAAAATTACTGAACCTCTACGCATGATTCTGACG
ATTGCTGTGGTGCCTCGGATAGCACGGGTTTTGGGAAGAGCTCCTTCATA
GGTACACTAGGATCTTGTTCCATCTGAAGGAAGCTAGAAGTGGATTTCGA
AGAAGGTCGCGGCCTTCAGCTCCGAATATTTCGACGGGGAGATCCTGTAT
TTTTGGTAACGGAAGCTTGGGAGGGCCAATTTCTCCCGAAGTATTTTAGA
AACGATTTGACTAAAGGAAGAGAACCTCTTACGCGTGTTATT

protein sequence of rna1961

>rna1961-protein ID=rna1961-protein|Name=rna1961|organism=Nannochloropsis gaditana|type=polypeptide|length=184bp
MFKRFVYKSGLLLKGTAGAINEPTLSSVQAATAGLIVFAANQTIQIKESR
RSMTFSTQKKDGGKIASNKPLSVVLQEFEASLDANELRPLIAENAEELLK
EAADAVPFAPGTRGSRRKKRQRERLRVVRRADYIRKLQKIAKHEQKMQRR
SVAAVTERLGKLGLSFPVKDMKGLERSEAQKGDV

mRNA from alignment at CM002458.1:578411..580763-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1961 ID=rna1961|Name=rna1961|organism=Nannochloropsis gaditana|type=mRNA|length=2353bp|location=Sequence derived from alignment at CM002458.1:578411..580763- (Nannochloropsis gaditana)
TCCCTAAGCATGCTCCCAATTTTACGGACGATCAGAATCGAATCTGTGGA
CTCTTCAATTCGCATGAACAGATCTTATTTGAACCGCGTGCCATGTCTAC
AACAGTCTCCAATTGTCAATCTCTAACTAACAAGTTGTAAGCCCGAGCAT
CGCCCGGTATACCATCTTGAGCCTGAAGTTTTAACACCATCATAACACCT
ATGCTCGCACGCAATCATCTCTTACGGAACAGGCATGTTTAAGCGCTTTG
TTTATAAGAGTGGTCTTCTTTTGAAGGGGACTGCTGGGGCGATCAACGAG
CCGACCTTATCTTCAGTACAAGCTGCCACAGCAGGTCTTATCGTCTTTGC
TGCCAATCAGACGATTCAAATAAAAGAAAGCCGCCGATCAATGACATTTT
CAACACAAAAAAAAGGTATATGTCTGATAACGGTCTTTGCTGCTTCAATG
CGAATTATTTGAATTCTCAATGAACTGCTTTACTTCATCTATGTGCAGAT
GGAGGCAAGATAGCCTCGAACAAGCCGCTATCCGTCGTTTTACAAGAATT
TGAAGCTTCCCTTGACGCCAATGTATGTGCTGTATGGGACAGAGGGTGTC
ATACAGAAAGGATCTTGTGACGTCAACTAAATCAGAAATTCCCGTACTCA
GGAACTGCGACCGCTTATCGCAGAAAATGCTGAGGAGCTGCTCAAAGAGG
CAGCGGATGCTGTTCCCTTCGCACCGGGTACACGGGGATCTCGACGCAAA
AAAAGACAGCGTGAGCGCTTACGTGTCGTTCGGGTAAGATTTGATGAGAG
ACGAGCAGAGGGAGATATGTAGGAGAGCCGACAAGGGATAAATATTCATC
TCATCTGCTTTTCCTATATCGCGCCTTTCCGTGCTTCTGTGTGTGGAAAA
AGCGCGCTGACTACATCAGAAAGCTTCAGAAAATTGCTAAACATGAGCAA
AAGATGCAACGACGCTCTGTGGCCGCTGTTACTGAACGGCTAGGAAAACT
GGGTTTATCTTTTCCAGTCAAAGATATGAAGGGGCTAGAACGATCTGAAG
CGCAGAAAGGTGATGTGTGAGCAAAAAAGAAAAATCGTGACACTTGCCCA
TGTAGCGTACCTAATAACACGCGTAAGAGGTTCTCTTCCTTTAGTCAAAT
CGTTTCTAAAATACTTCGGGAGAAATTGGCCCTCCCAAGCTTCCGTTACC
AAAAATACAGGATCTCCCCGTCGAAATATTCGGAGCTGAAGGCCGCGACC
TTCTTCGAAATCCACTTCTAGCTTCCTTCAGATGGAACAAGATCCTAGTG
TACCTATGAAGGAGCTCTTCCCAAAACCCGTGCTATCCGAGGCACCACAG
CAATCGTCAGAATCATGCGTAGAGGTTCAGTAATTTTCGTAAGGACCCAA
GCTACGGCAAAGTTACCCGCATGCGGGTTAGTTTGTATGGTTTCAACAAG
CGGCTCACTCCAAGAATAATTCTCTAGGAGGTGCGTGGCTTTCTCCACCA
GCCAGTTCGAGTCCAAACCGTAGTCGAAAGGGGTAAGACCTGACTCCACC
GCTGCAAAGAGTGCACTAAGTGTCACGACATACACGCCAAGATATGTTAT
CACGGCGACTGCTCCATATCGCTTAACCATCAAACGCAGCTTTCCCATTT
TATTGACATCTTCTTGAGGCCTGGTACTTTCCGTTCCCATTCCAGCAGGT
GCGGCACCCCCTTCGCCTTGGCTCCTTAAATTGCCCTTGCTCTCAATATC
ACGACCATTGCAGGTGGTGCTGCTGCTCCTTTCGCCACTGCTAGTGCCGC
TGCCCAACCGCGTATTGGAACCTGCAAGGCGATGACTGATGTGAAAAAGG
CCTAGTGAAAGATTAGGGGCTCTCCTTGTGACGTAAAAATCGTCCAGAGC
ATCTAGACGATCGGCCCGCCGTATCCTCGCGTGCGGGCCACCAAAATCTG
CATGAATGTGTGTTTTGAACGCCAAATACCGCTGAGGACTAGCCGATACA
AAGCAAAGGCGACTTTGTTCATGACTGGACAAAGTTGCTGTGGGTCTGAT
CCATGTGAGACCACAGACAGGAGAGCGCATTGGAGCTGCACAACTAAATC
GCAAGAGGCCCACGACGCCGCCTTGACCGCGAAACATACTCAGCGATTAT
GCCTACGACAAATTTGAGAAGTGGATAGAATAATTGTGAGTTTTTCCCGA
AAGCGTGCGACTTTTTCCCCTTAGAGCCTTGATTAGCTAGAGCGTGCGTG
GCCGGTCTCAAAAAGCTTCTTTGGGGGGAAGGAAACAGAGCCGCGCCCAT
GGTAGAGCATACTTCGTCATCATTAAAAAAAACGAAGATGAAGAATAATA
AGA

Coding sequence (CDS) from alignment at CM002458.1:578411..580763-

>rna1961 ID=rna1961|Name=rna1961|organism=Nannochloropsis gaditana|type=CDS|length=2220bp|location=Sequence derived from alignment at CM002458.1:578411..580763- (Nannochloropsis gaditana)
CGCGCTGACTACATCAGAAAGCTTCAGAAAATTGCTAAACATGAGCAAAA
GATGCAACGACGCTCTGTGGCCGCTGTTACTGAACGGCTAGGAAAACTGG
GTTTATCTTTTCCAGTCAAAGATATGAAGGGGCTAGAACGATCTGAAGCG
CAGAAAGGTGATGTGTGAGAACTGCGACCGCTTATCGCAGAAAATGCTGA
GGAGCTGCTCAAAGAGGCAGCGGATGCTGTTCCCTTCGCACCGGGTACAC
GGGGATCTCGACGCAAAAAAAGACAGCGTGAGCGCTTACGTGTCGTTCGG
ATGGAGGCAAGATAGCCTCGAACAAGCCGCTATCCGTCGTTTTACAAGAA
TTTGAAGCTTCCCTTGACGCCAATATGTTTAAGCGCTTTGTTTATAAGAG
TGGTCTTCTTTTGAAGGGGACTGCTGGGGCGATCAACGAGCCGACCTTAT
CTTCAGTACAAGCTGCCACAGCAGGTCTTATCGTCTTTGCTGCCAATCAG
ACGATTCAAATAAAAGAAAGCCGCCGATCAATGACATTTTCAACACAAAA
AAAAGCGCGCTGACTACATCAGAAAGCTTCAGAAAATTGCTAAACATGAG
CAAAAGATGCAACGACGCTCTGTGGCCGCTGTTACTGAACGGCTAGGAAA
ACTGGGTTTATCTTTTCCAGTCAAAGATATGAAGGGGCTAGAACGATCTG
AAGCGCAGAAAGGTGATGTGTGAGAACTGCGACCGCTTATCGCAGAAAAT
GCTGAGGAGCTGCTCAAAGAGGCAGCGGATGCTGTTCCCTTCGCACCGGG
TACACGGGGATCTCGACGCAAAAAAAGACAGCGTGAGCGCTTACGTGTCG
TTCGGATGGAGGCAAGATAGCCTCGAACAAGCCGCTATCCGTCGTTTTAC
AAGAATTTGAAGCTTCCCTTGACGCCAATATGTTTAAGCGCTTTGTTTAT
AAGAGTGGTCTTCTTTTGAAGGGGACTGCTGGGGCGATCAACGAGCCGAC
CTTATCTTCAGTACAAGCTGCCACAGCAGGTCTTATCGTCTTTGCTGCCA
ATCAGACGATTCAAATAAAAGAAAGCCGCCGATCAATGACATTTTCAACA
CAAAAAAAAGCGCGCTGACTACATCAGAAAGCTTCAGAAAATTGCTAAAC
ATGAGCAAAAGATGCAACGACGCTCTGTGGCCGCTGTTACTGAACGGCTA
GGAAAACTGGGTTTATCTTTTCCAGTCAAAGATATGAAGGGGCTAGAACG
ATCTGAAGCGCAGAAAGGTGATGTGTGAGAACTGCGACCGCTTATCGCAG
AAAATGCTGAGGAGCTGCTCAAAGAGGCAGCGGATGCTGTTCCCTTCGCA
CCGGGTACACGGGGATCTCGACGCAAAAAAAGACAGCGTGAGCGCTTACG
TGTCGTTCGGATGGAGGCAAGATAGCCTCGAACAAGCCGCTATCCGTCGT
TTTACAAGAATTTGAAGCTTCCCTTGACGCCAATATGTTTAAGCGCTTTG
TTTATAAGAGTGGTCTTCTTTTGAAGGGGACTGCTGGGGCGATCAACGAG
CCGACCTTATCTTCAGTACAAGCTGCCACAGCAGGTCTTATCGTCTTTGC
TGCCAATCAGACGATTCAAATAAAAGAAAGCCGCCGATCAATGACATTTT
CAACACAAAAAAAAGCGCGCTGACTACATCAGAAAGCTTCAGAAAATTGC
TAAACATGAGCAAAAGATGCAACGACGCTCTGTGGCCGCTGTTACTGAAC
GGCTAGGAAAACTGGGTTTATCTTTTCCAGTCAAAGATATGAAGGGGCTA
GAACGATCTGAAGCGCAGAAAGGTGATGTGTGAGAACTGCGACCGCTTAT
CGCAGAAAATGCTGAGGAGCTGCTCAAAGAGGCAGCGGATGCTGTTCCCT
TCGCACCGGGTACACGGGGATCTCGACGCAAAAAAAGACAGCGTGAGCGC
TTACGTGTCGTTCGGATGGAGGCAAGATAGCCTCGAACAAGCCGCTATCC
GTCGTTTTACAAGAATTTGAAGCTTCCCTTGACGCCAATATGTTTAAGCG
CTTTGTTTATAAGAGTGGTCTTCTTTTGAAGGGGACTGCTGGGGCGATCA
ACGAGCCGACCTTATCTTCAGTACAAGCTGCCACAGCAGGTCTTATCGTC
TTTGCTGCCAATCAGACGATTCAAATAAAAGAAAGCCGCCGATCAATGAC
ATTTTCAACACAAAAAAAAG

Synonyms

Publications