EWM28701.1, cds1956 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM28701.1
Unique Name	cds1956
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002458.1:580349..580529 -
Alignment location	CM002458.1:580192..580265 -
Alignment location	CM002458.1:579981..580112 -
Alignment location	CM002458.1:579694..579861 -

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM28701.1
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100002g57.4820.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:580349..580529 -
CM002458.1	supercontig	CM002458.1:580192..580265 -
CM002458.1	supercontig	CM002458.1:579981..580112 -
CM002458.1	supercontig	CM002458.1:579694..579861 -

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

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BLAST of EWM28701.1 vs. NCBI_GenBank
Match: gi|585111124|gb|EWM28701.1| (hypothetical protein Naga_100002g57 [Nannochloropsis gaditana])

HSP 1 Score: 368.622 bits (945), Expect = 5.089e-129
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 0

Query:    1 MFKRFVYKSGLLLKGTAGAINEPTLSSVQAATAGLIVFAANQTIQIKESRRSMTFSTQKKDGGKIASNKPLSVVLQEFEASLDANELRPLIAENAEELLKEAADAVPFAPGTRGSRRKKRQRERLRVVRRADYIRKLQKIAKHEQKMQRRSVAAVTERLGKLGLSFPVKDMKGLERSEAQKGDV 184
            MFKRFVYKSGLLLKGTAGAINEPTLSSVQAATAGLIVFAANQTIQIKESRRSMTFSTQKKDGGKIASNKPLSVVLQEFEASLDANELRPLIAENAEELLKEAADAVPFAPGTRGSRRKKRQRERLRVVRRADYIRKLQKIAKHEQKMQRRSVAAVTERLGKLGLSFPVKDMKGLERSEAQKGDV
Sbjct:    1 MFKRFVYKSGLLLKGTAGAINEPTLSSVQAATAGLIVFAANQTIQIKESRRSMTFSTQKKDGGKIASNKPLSVVLQEFEASLDANELRPLIAENAEELLKEAADAVPFAPGTRGSRRKKRQRERLRVVRRADYIRKLQKIAKHEQKMQRRSVAAVTERLGKLGLSFPVKDMKGLERSEAQKGDV 184

The following BLAST results are available for this feature:

BLAST of EWM28701.1 vs. NCBI_GenBank

BLAST of EWM28701.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|585111124\|gb\|EWM28701.1\|	5.089e-129	100.00	hypothetical protein Naga_100002g57 [Nannochlorops...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna1961	rna1961	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications