rna1960, rna1960 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1960
Unique Name	rna1960
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2695
Alignment location	CM002458.1:578360..579651 +

Link to JBrowse

Properties


Property Name	Value
Product	protein of unknown function DUF1279
Orig transcript id	gnl\|cribi\|Naga_100002g58.4918.mrna
Orig protein id	gnl\|cribi\|Naga_100002g58.4918
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:578360..579651 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100002g58	gene1872	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1960	rna1960-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28799.1	cds1955	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:578360..579651+
coding sequence from alignment at CM002458.1:578360..579651+

mRNA sequence

>rna1960 ID=rna1960|Name=rna1960|organism=Nannochloropsis gaditana|type=mRNA|length=2695bp
AGAAGAGGAAATGACAAGCTTGTTCAATCCGCGTGGTGTGAGTGATCGTC
TTAGGATTGTTTCGATGCACAATCAAGATTGCACCATATCCAATGAAAGT
AGAACAAGGTCTATTATTCGTTTGGTGTTCGATCTTCAAGGCCTTTCCCG
AACATAAGGGTAGACGAGGTTATGGCACGGAAAAACAGAATCGAGGTTGT
TGAAAGCAAAACGCCTGCTGAGTTTTTCAGTGAGCATCAATCCATCTGTG
GTTTTGACAATCCTGGACGATCACTGTATACTACTGTTCGAGAGTTAGTG
GAGAACGCGCTGGACGCAGCTGAATCAATTCAAGAACTTCCTTATGTATC
AGTCGTCATCGAGGAGATTACGGAAGACGAGCTCAATGAACTGCGGGGTA
TGGAGAGCCGTGAACGTGTGGATTTGGGACTCTTTCATAAGGCAACAGGA
AAAAGGAGAAGCGGCGGTGAGATTCAAGAAGTGCTCGCAGAAAACATGAA
AGAACTCCACTCTGATGCTCTTGAAAAGCAAATGGGACAGAATTCAGCGG
CCTTGTCGAATAAAAAAAAAGGTGACCGCGGCGCTCGCAACTATTATCGA
GTCACATGCGAGGATAATGGATGTGGAATGGCTCACGAGAAAATTCCGGA
TATGTTGGGACGTGTGCTTTCTAGTAGCAAATATGGCGTGCGTCAAACTA
GAGGGAAATTCGGACTTGGTTCCAAGATGGCATTGATATGGTCCAAAAAA
AGTACTGGTTTGCCAATTGAGGTACGGAGCGCGCATTCACTTGAAGAAAA
TCATCCCGCCGCGTACATATCCCACTGTGTTCTGGACATTGATATCTATC
GAAACCAGCCCTTTGTGAAATTGCATGAAAAAGTGGCCAATATTAAGGGA
TGGCGAGGAACGCGTATCGACGTGGTTGTTGAAGGCAACTGGAGCACATA
TAAAACGCATATTATGACGTATTTTCAGCAGCTCGCCATCATCACGCCCT
ATGCGCACATGGAATTCACCTTTCGCACTTTATCAAATGCGTCCCGAGAG
GTTATCACGCAGTACGCTCGCCGCTCTGAGCATATGCCCCCACCTGCTCA
AGAGGTTAAGCACCATCCGAGTTCCATCAATCATCTCATCATACAACAGC
TGATAAAGCGCACAAGCACGAAAACGTTTTTAAATTTCTTATGCACCGAA
CTTGCCTGTGTGACCCGGCCTTTGGCTGCTCGCATTGTAAAAGAGCTCGG
AAATGGATTCGCTGAAAATATGGTACCAGAGGATATTGATGCCAACAAAA
CAATTCGTCTCACTTCCATGCTCAAATCGATCTCTATCTTCAAGCTTCCT
GACGGAAGCTGCCTTAGTCCTGCCGGCGAATACAATTTGCGGCTCGGGAT
AATGAAAGAGCTTCATCCGGATTATGTGGCGACAGTGAGTGAACAGGCAG
CGGCTTTCGAAGGACATCCTTTCGTAGTCGAGGCAGGTGTCTCACTCGGT
GGAAATGCGTTGAAGGATGGCATCAACGTATATCGTTTCGCTAATCGCAT
CCCGTTGCTCTTCGAGGCTGGCAACGACGTTGTGACGCAGGTGGCGAATC
GACGCATCAACTGGCAGTCTTACAAGATCGATCCAAAAAGAGATCGCATT
GGAGTTTTCGTCTCGATTGTTAGCACCAAAATTCCTTTTAAAGGTACGGG
TAAGGAATATATCGGTGACGATACCGAGGCGATTCGCAAAAGCGTCAAAA
GCGCTCTTCAACGATGCTGCAAACAGCTCAAGCAGCATCTTCTTACTCGA
AATGCCGCCAGGGACGTGAAGGAGCGGAAAAGAAGCCTTTTGCGCTATAT
GCCCGATGTGTCAAGGGCAATCGCGGCGGTTTTGAACAGCATAAACAAGC
GAAAAAGAATTGTTAATAGCGAGAATTGGACACGCAGTAACACAGACGGC
TTTTCGCAGCCACAAAGCGCAAGACACAAACAGGCGAAGCTATTTGACTT
CATTGAACGTAAATGGGACACTAACCCCCATACATTTATGTCATCACACT
TGAATCTCGTGGAGGAGGCTAGAAACATGGATCTTGTCGATAAAAAATTG
CAAAACAGGTTGAAGAGCGCCATTGATCGGGTAGATCTGGAAAGTGCTTT
AGAGGTCGCAGCAATCAATAGGAGCAACGGTGGATTAATATCAAAAGAGA
GACTTTTCGTGGCACCCCTTCAATTGAAAACGTCTCTGACCACATCGCTT
TTGAGCCCCCTCCATAGTGTCCATTTCTACTCTTCTGCCCTTGTTGCAAT
TTGCACGCCTCACAACGAAAAAAGCCATAAAACCACTAGCTCGATTGAAG
TGCCGAAGTAGTAAACGGTGGACAAATAAAGTGCTTGCTACGTACAATAA
AGCCACTCATTGATCGGCATGCAGTCATCTCCAGGTTTTGAACCGTTTTG
TTTTGGAACTATTCGCGGCCGTCCCTACCATTAAATCTTGATGCATTGTC
GCCTCATCGCAAAAGTCAAATACAGCTTGTCGTTAAACGTAATTGTTTAA
TTGCTTGTTCGTGGTGATACACTTCCGCGAGCAATTGTCCTTTCGTCATT
AAGGCTAGTTCCAAAATAGAATTGAGTGCAATTCTCTGTTCTCTCGCCTC
TTTCTCCCGACCATCTTCAATTGCCGATGCGTCGATCACTTCGCC

protein sequence of rna1960

>rna1960-protein ID=rna1960-protein|Name=rna1960|organism=Nannochloropsis gaditana|type=polypeptide|length=277bp
MFRGQGGVVGLLRFSCAAPMRSPVCGLTWIRPTATLSSHEQSRLCFVSAS
PQRYLAFKTHIHADFGGPHARIRRADRLDALDDFYVTRRAPNLSLGLFHI
SHRLAGSNTRLGSGTSSGERSSSTTCNGRDIESKGNLRSQGEGGAAPAGM
GTESTRPQEDVNKMGKLRLMVKRYGAVAVITYLGVYVVTLSALFAAVESG
LTPFDYGLDSNWLVEKATHLLENYSWSEPLVETIQTNPHAGNFAVAWVLT
KITEPLRMILTIAVVPRIARVLGRAPS

mRNA from alignment at CM002458.1:578360..579651+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1960 ID=rna1960|Name=rna1960|organism=Nannochloropsis gaditana|type=mRNA|length=1292bp|location=Sequence derived from alignment at CM002458.1:578360..579651+ (Nannochloropsis gaditana)
AGGCATCATTCGCCGGACTGGGCAAGACTACAAATAGCCATCAAGGTTGT
TTCTTATTATTCTTCATCTTCGTTTTTTTTAATGATGACGAAGTATGCTC
TACCATGGGCGCGGCtctgtttccttccccccaaagAAGCTTTTTGAGAC
CGGCCACGCACGCTCTAGCTAATCAAGGCTCTAAGGGGAAAAAGTCGCAC
GCTTTCGGGAAAAACTCACAATTATTCTATCCACTTCTCAAATTTGTCGT
AGGCATAATCGCTGAGTATGTTTCGCGGTCAAGGCGGCGTCGTGGGCCTC
TTGCGATTTAGTTGTGCAGCTCCAATGCGCTCTCCTGTCTGTGGTCTCAC
ATGGATCAGACCCACAGCAACTTTGTCCAGTCATGAACAAAGTCGCCTTT
GCTTTGTATCGGCTAGTCCTCAGCGGTATTTGGCGTTCAAAACACACATT
CATGCAGATTTTGGTGGCCCGCACGCGAGGATACGGCGGGCCGATCGTCT
AGATGCTCTGGACGATTTTTACGTCACAAGGAGAGCCCCTAATCTTTCAC
TAGGCCTTTTTCACATCAGTCATCGCCTTGCAGGTTCCAATACGCGGTTG
GGCAGCGGCACTAGCAGTGGCgaaaggagcagcagcaccacctgCAATGG
TCGTGATATTGAGAGCAAGGGCAATTTAAGGAgccaaggcgaagggggtg
CCGCACCTGCTGGAATGGGAACGGAAAGTACCAGGCCTCAAGAAGATGTC
AATAAAATGGGAAAGCTGCGTTTGATGGTTAAGCGATATGGAGCAGTCGC
CGTGATAACATATCTTGGCGTGTATGTCGTGACACTTAGTGCACTCTTTG
CAGCGGTGGAGTCAGGTCTTACCCCTTTCGACTACGGTTTGGACTCGAAC
TGGCTGGTGGAGAAAGCCACGCACCTCCTAGAGAATTATTCTTGGAGTGA
GCCGCTTGTTGAAACCATACAAACTAACCCGCATGCGGGTAACTTTGCCG
TAGCTTGGGTCCTTACGAAAATTACTGAACCTCTACGCATGATTCTGACG
ATTGCTGTGGTGCCTCGGATAGCACGGGTTTTGGGAAGAGCTCCTTCATA
GGTACACTAGGATCTTGTTCCATCTGAAGGAAGCTAGAAGTGGATTTCGA
AGAAGGTCGCGGCCTTCAGCTCCGAATATTTCGACGGGGAGATCCTGTAT
TTTTGGTAACGGAAGCTTGGGAGGGCCAATTTCTCCCGAAGTATTTTAGA
AACGATTTGACTAAAGGAAGAGAACCTCTTACGCGTGTTATT

Coding sequence (CDS) from alignment at CM002458.1:578360..579651+

>rna1960 ID=rna1960|Name=rna1960|organism=Nannochloropsis gaditana|type=CDS|length=834bp|location=Sequence derived from alignment at CM002458.1:578360..579651+ (Nannochloropsis gaditana)
ATGTTTCGCGGTCAAGGCGGCGTCGTGGGCCTCTTGCGATTTAGTTGTGC
AGCTCCAATGCGCTCTCCTGTCTGTGGTCTCACATGGATCAGACCCACAG
CAACTTTGTCCAGTCATGAACAAAGTCGCCTTTGCTTTGTATCGGCTAGT
CCTCAGCGGTATTTGGCGTTCAAAACACACATTCATGCAGATTTTGGTGG
CCCGCACGCGAGGATACGGCGGGCCGATCGTCTAGATGCTCTGGACGATT
TTTACGTCACAAGGAGAGCCCCTAATCTTTCACTAGGCCTTTTTCACATC
AGTCATCGCCTTGCAGGTTCCAATACGCGGTTGGGCAGCGGCACTAGCAG
TGGCgaaaggagcagcagcaccacctgCAATGGTCGTGATATTGAGAGCA
AGGGCAATTTAAGGAgccaaggcgaagggggtgCCGCACCTGCTGGAATG
GGAACGGAAAGTACCAGGCCTCAAGAAGATGTCAATAAAATGGGAAAGCT
GCGTTTGATGGTTAAGCGATATGGAGCAGTCGCCGTGATAACATATCTTG
GCGTGTATGTCGTGACACTTAGTGCACTCTTTGCAGCGGTGGAGTCAGGT
CTTACCCCTTTCGACTACGGTTTGGACTCGAACTGGCTGGTGGAGAAAGC
CACGCACCTCCTAGAGAATTATTCTTGGAGTGAGCCGCTTGTTGAAACCA
TACAAACTAACCCGCATGCGGGTAACTTTGCCGTAGCTTGGGTCCTTACG
AAAATTACTGAACCTCTACGCATGATTCTGACGATTGCTGTGGTGCCTCG
GATAGCACGGGTTTTGGGAAGAGCTCCTTCATAG

Synonyms

Publications