EWM28799.1, cds1955 (CDS) Nannochloropsis gaditana

Overview
NameEWM28799.1
Unique Namecds1955
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:578627..579460 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28799.1
Productprotein of unknown function DUF1279
Orig transcript idgnl|cribi|Naga_100002g58.4918.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:578627..579460 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR009688DUF1279
Homology
BLAST of EWM28799.1 vs. NCBI_GenBank
Match: gi|585111222|gb|EWM28799.1| (protein of unknown function DUF1279 [Nannochloropsis gaditana])

HSP 1 Score: 570.466 bits (1469), Expect = 0.000e+0
Identity = 277/277 (100.00%), Postives = 277/277 (100.00%), Query Frame = 0
Query:    1 MFRGQGGVVGLLRFSCAAPMRSPVCGLTWIRPTATLSSHEQSRLCFVSASPQRYLAFKTHIHADFGGPHARIRRADRLDALDDFYVTRRAPNLSLGLFHISHRLAGSNTRLGSGTSSGERSSSTTCNGRDIESKGNLRSQGEGGAAPAGMGTESTRPQEDVNKMGKLRLMVKRYGAVAVITYLGVYVVTLSALFAAVESGLTPFDYGLDSNWLVEKATHLLENYSWSEPLVETIQTNPHAGNFAVAWVLTKITEPLRMILTIAVVPRIARVLGRAPS 277
            MFRGQGGVVGLLRFSCAAPMRSPVCGLTWIRPTATLSSHEQSRLCFVSASPQRYLAFKTHIHADFGGPHARIRRADRLDALDDFYVTRRAPNLSLGLFHISHRLAGSNTRLGSGTSSGERSSSTTCNGRDIESKGNLRSQGEGGAAPAGMGTESTRPQEDVNKMGKLRLMVKRYGAVAVITYLGVYVVTLSALFAAVESGLTPFDYGLDSNWLVEKATHLLENYSWSEPLVETIQTNPHAGNFAVAWVLTKITEPLRMILTIAVVPRIARVLGRAPS
Sbjct:    1 MFRGQGGVVGLLRFSCAAPMRSPVCGLTWIRPTATLSSHEQSRLCFVSASPQRYLAFKTHIHADFGGPHARIRRADRLDALDDFYVTRRAPNLSLGLFHISHRLAGSNTRLGSGTSSGERSSSTTCNGRDIESKGNLRSQGEGGAAPAGMGTESTRPQEDVNKMGKLRLMVKRYGAVAVITYLGVYVVTLSALFAAVESGLTPFDYGLDSNWLVEKATHLLENYSWSEPLVETIQTNPHAGNFAVAWVLTKITEPLRMILTIAVVPRIARVLGRAPS 277          
BLAST of EWM28799.1 vs. NCBI_GenBank
Match: gi|553194051|ref|XP_005855884.1| (hypothetical protein NGA_2087520 [Nannochloropsis gaditana CCMP526] >gi|553194653|ref|XP_005856007.1| hypothetical protein NGA_2087510 [Nannochloropsis gaditana CCMP526] >gi|422293054|gb|EKU20355.1| hypothetical protein NGA_2087510 [Nannochloropsis gaditana CCMP526] >gi|422293177|gb|EKU20477.1| hypothetical protein NGA_2087520 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 564.688 bits (1454), Expect = 0.000e+0
Identity = 274/277 (98.92%), Postives = 275/277 (99.28%), Query Frame = 0
Query:    1 MFRGQGGVVGLLRFSCAAPMRSPVCGLTWIRPTATLSSHEQSRLCFVSASPQRYLAFKTHIHADFGGPHARIRRADRLDALDDFYVTRRAPNLSLGLFHISHRLAGSNTRLGSGTSSGERSSSTTCNGRDIESKGNLRSQGEGGAAPAGMGTESTRPQEDVNKMGKLRLMVKRYGAVAVITYLGVYVVTLSALFAAVESGLTPFDYGLDSNWLVEKATHLLENYSWSEPLVETIQTNPHAGNFAVAWVLTKITEPLRMILTIAVVPRIARVLGRAPS 277
            MFRGQGGVVGLLRFSCAAPMRSPVCGLTWIRPTATLSSHEQSRLCFVSASPQRYLAFKTHIHADFGGPHARIRRADRLDALDDFYVTRRAPNLSLGLFHISHRLAGSNTRLGSGTS GERSSSTTCNGRDIESKGNLRSQGEGGAAPAGMGTES+RPQEDVNKMGKLRLMVKRYGAVAVITYLGVYVVTLSALFAAVESGLTPFDYGLDSNWLVEKATHLLENYSWSEPLVETIQTNPHAGNFAVAWVLTK TEPLRMILTIAVVPRIARVLGRAPS
Sbjct:    1 MFRGQGGVVGLLRFSCAAPMRSPVCGLTWIRPTATLSSHEQSRLCFVSASPQRYLAFKTHIHADFGGPHARIRRADRLDALDDFYVTRRAPNLSLGLFHISHRLAGSNTRLGSGTSCGERSSSTTCNGRDIESKGNLRSQGEGGAAPAGMGTESSRPQEDVNKMGKLRLMVKRYGAVAVITYLGVYVVTLSALFAAVESGLTPFDYGLDSNWLVEKATHLLENYSWSEPLVETIQTNPHAGNFAVAWVLTKFTEPLRMILTIAVVPRIARVLGRAPS 277          
BLAST of EWM28799.1 vs. NCBI_GenBank
Match: gi|219130726|ref|XP_002185509.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217403040|gb|EEC42996.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 85.1149 bits (209), Expect = 1.993e-15
Identity = 42/117 (35.90%), Postives = 70/117 (59.83%), Query Frame = 0
Query:  167 LRLMVKRYGAVAVITYLGVYVVTLSALFAAVESG-LTPFD-YGL-----DSNWLVEKATHLLENYSWSEPLVETIQTNPHAGNFAVAWVLTKITEPLRMILTIAVVPRIARVLGRAP 276
            ++ M ++YG V V+TY  +Y+ TL  LF  V+SG L P   +G      ++   V+     ++++S ++P    +++NP   N AVAW+ TK TEP+R+ + + + P+IAR LG AP
Sbjct:  205 VKAMFQQYGPVFVVTYGSLYLTTLGCLFMGVQSGVLDPASVFGFLGQADETKDTVQLVVDFMQHHSITQPYAHVVESNPTYANLAVAWIATKFTEPVRLAVALPITPKIARYLGYAP 321          
BLAST of EWM28799.1 vs. NCBI_GenBank
Match: gi|635361378|emb|CCI49673.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 81.2629 bits (199), Expect = 4.564e-15
Identity = 46/134 (34.33%), Postives = 78/134 (58.21%), Query Frame = 0
Query:  153 ESTRPQEDVNKMGKLRLMVKRYGAVAVITYLGVYVVTLSALFAAVESGL------TPFDYGLDSNWLVEKATH----LLENYSWSEPLVETIQTNPHAGNFAVAWVLTKITEPLRMILTIAVVPRIARVLGRAP 276
            ES + Q   + + + + + ++YG VA+ TY  +Y + L +++ ++E+GL      T  +    +N+ V   T+    L E+Y   + L +  + N   G+F +AWV TK TEP+R+ +T+A+ PRIAR LGRAP
Sbjct:   51 ESIKAQSQTH-LNRFKDLWRKYGLVAIGTYFTMYGIVLGSIYISIENGLISKNRNTRLNKDTTTNFDVVSTTNKMIALAEDYGLVKYL-DVERVNSKTGSFVIAWVATKFTEPIRLAITLAITPRIARFLGRAP 182          
BLAST of EWM28799.1 vs. NCBI_GenBank
Match: gi|470491896|ref|XP_004345946.1| (hypothetical protein ACA1_183360 [Acanthamoeba castellanii str. Neff] >gi|440800363|gb|ELR21402.1| hypothetical protein ACA1_183360 [Acanthamoeba castellanii str. Neff])

HSP 1 Score: 82.8037 bits (203), Expect = 7.470e-15
Identity = 48/117 (41.03%), Postives = 69/117 (58.97%), Query Frame = 0
Query:  154 STRPQEDVNKMGKLRLMVKRYGAVAVITYLGVYVVTLSALFAAVESGLTPFDYGLDSNWLVEKATHLLENYSWSEPLVETIQTNPHAGNFAVAWVLTKITEPLRMILTIAVVPRIAR 270
            S+   E   K+GK+R  +K+YGAV V+TY G+Y  TL++ + A  SGL    +  D   L+E   HL + +       E++ T P  GNFA+AWV TK TEPLR  +T+ + P I+R
Sbjct:  156 SSAEAEAKPKLGKIRTFLKKYGAVGVVTYFGLYGATLASFYGAYSSGLL---FAGDVVGLIE-FLHLGDFFD------ESLLT-PKVGNFALAWVSTKFTEPLRFAITLGITPSISR 261          
BLAST of EWM28799.1 vs. NCBI_GenBank
Match: gi|325181939|emb|CCA16393.1| (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 78.9518 bits (193), Expect = 9.385e-15
Identity = 42/124 (33.87%), Postives = 70/124 (56.45%), Query Frame = 0
Query:  164 MGKLRLMVKRYGAVAVITYLGVYVVTLSALFAAVESGLTPFDYGLDSNW----------LVEKATHLLENYSWSEPLVETIQTNPHAGNFAVAWVLTKITEPLRMILTIAVVPRIARVLGRAPS 277
            + + + + ++YG VA+ TY  +Y + L  ++ ++E+GL   +  + SN              K   L E+Y  ++ L +  + N   G+F +AWV TK TEP+R+ +T+A+ PRIAR LGRAP 
Sbjct:    3 LNRFKDLWRKYGLVAIGTYFTMYGIVLGTIYISIENGLISKNRNVRSNKDTTTDFDVVSTTNKMIALAEDYGLAKYL-DVERVNSKTGSFVIAWVATKFTEPIRLAITLAITPRIARFLGRAPK 125          
BLAST of EWM28799.1 vs. NCBI_GenBank
Match: gi|1210528229|dbj|GAX13344.1| (hypothetical protein FisN_17Hh287 [Fistulifera solaris])

HSP 1 Score: 81.2629 bits (199), Expect = 1.021e-14
Identity = 42/117 (35.90%), Postives = 68/117 (58.12%), Query Frame = 0
Query:  170 MVKRYGAVAVITYLGVYVVTLSALFAAVESG-LTPF--------DYGLDSNWLVEKATHLLENYSWSEPLVETIQTNPHAGNFAVAWVLTKITEPLRMILTIAVVPRIARVLGRAPS 277
            M+K+YG V + TYLGVYV TL+  F  +E+G L P         D G  ++   +     ++N++ ++P V  ++  P   NFAVAW+  K TEP+R+ + + + PR+AR++G  P 
Sbjct:  101 MMKKYGPVFIGTYLGVYVTTLALFFGGIETGVLDPVVLFQWIGSDSGSVTSTTYDLVMEFMKNHAVTKPAVPYLEKYPAMANFAVAWITVKFTEPVRLPIALFLTPRVARMVGYRPK 217          
BLAST of EWM28799.1 vs. NCBI_GenBank
Match: gi|1210532180|dbj|GAX09246.1| (hypothetical protein FisN_17Lh287 [Fistulifera solaris])

HSP 1 Score: 80.8777 bits (198), Expect = 1.752e-14
Identity = 45/118 (38.14%), Postives = 71/118 (60.17%), Query Frame = 0
Query:  170 MVKRYGAVAVITYLGVYVVTLSALFAAVESG-LTP---FDY-GLDSNWLVEKATH-----LLENYSWSEPLVETIQTNPHAGNFAVAWVLTKITEPLRMILTIAVVPRIARVLGRAPS 277
            M+K+YG V + TYL VYV TL+ LF  +E+G L P   F + G DS  +    T+      ++N++ ++P V  ++  P   NFAVAW+  K TEP+R+ + + + PR+AR++G  P 
Sbjct:  105 MMKKYGPVFIGTYLSVYVTTLALLFGGIETGVLDPVVLFQWIGSDSGSVSASTTYDLVMEFMKNHAVTKPAVPYLEKYPSMANFAVAWITVKFTEPVRLPVALFLTPRVARMVGYRPK 222          
BLAST of EWM28799.1 vs. NCBI_GenBank
Match: gi|698786266|ref|XP_009826165.1| (hypothetical protein H257_03670 [Aphanomyces astaci] >gi|574118993|gb|ETV84473.1| hypothetical protein H257_03670 [Aphanomyces astaci])

HSP 1 Score: 77.0258 bits (188), Expect = 1.850e-13
Identity = 47/121 (38.84%), Postives = 71/121 (58.68%), Query Frame = 0
Query:  164 MGKLRLMVKRYGAVAVITYLGVYVVTLSALFAAVESGL----TPFDY-----GLDSNWLVEKATHLLENYSWSEPL---VETIQTNPHAGNFAVAWVLTKITEPLRMILTIAVVPRIARVL 272
            + K + +   YG V V TYLGVYVVTL ++FAA+E+GL     P +        D ++ + KAT+ L +++ S  L         +P  G+F +AWV TK TEP+R+ +T+ + PR+AR L
Sbjct:   69 LQKFKDLWNTYGWVGVGTYLGVYVVTLGSMFAAIETGLLSTAAPSNKDDTNGSDDESFNIVKATNKLTDWTKSMGLGAHFNVPDVSPTTGSFLIAWVATKFTEPVRLAVTLMITPRLARFL 189          
BLAST of EWM28799.1 vs. NCBI_GenBank
Match: gi|1072231503|gb|OEU16235.1| (hypothetical protein FRACYDRAFT_238823 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 78.5666 bits (192), Expect = 4.214e-13
Identity = 45/138 (32.61%), Postives = 68/138 (49.28%), Query Frame = 0
Query:  167 LRLMVKRYGAVAVITYLGVYVVTLSALFAAVESGL----TPFDY---------------------GLDSNWLVEKAT------HLLENYSWSEPLVETIQTNPHAGNFAVAWVLTKITEPLRMILTIAVVPRIARVLG 273
             R M+++YG + + TY  VYV T+  LF  ++SG+    +  DY                         N +   A+        LE YSW++PL   +Q NP   NF +AW++TK TEP+R+ L +AV P IA+ +G
Sbjct:  192 FRSMLRQYGPIFIGTYGVVYVSTVFGLFMGIQSGILDATSIMDYLSGTASSTADAGGGAGGGGVDVDPDNTIQSAASTMTYMVEFLEYYSWTKPLAPIVQENPWTANFGIAWIMTKFTEPIRLGLAVAVTPSIAKKIG 329          
The following BLAST results are available for this feature:
BLAST of EWM28799.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111222|gb|EWM28799.1|0.000e+0100.00protein of unknown function DUF1279 [Nannochlorops... [more]
gi|553194051|ref|XP_005855884.1|0.000e+098.92hypothetical protein NGA_2087520 [Nannochloropsis ... [more]
gi|219130726|ref|XP_002185509.1|1.993e-1535.90predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|635361378|emb|CCI49673.1|4.564e-1534.33unnamed protein product [Albugo candida][more]
gi|470491896|ref|XP_004345946.1|7.470e-1541.03hypothetical protein ACA1_183360 [Acanthamoeba cas... [more]
gi|325181939|emb|CCA16393.1|9.385e-1533.87conserved hypothetical protein [Albugo laibachii N... [more]
gi|1210528229|dbj|GAX13344.1|1.021e-1435.90hypothetical protein FisN_17Hh287 [Fistulifera sol... [more]
gi|1210532180|dbj|GAX09246.1|1.752e-1438.14hypothetical protein FisN_17Lh287 [Fistulifera sol... [more]
gi|698786266|ref|XP_009826165.1|1.850e-1338.84hypothetical protein H257_03670 [Aphanomyces astac... [more]
gi|1072231503|gb|OEU16235.1|4.214e-1332.61hypothetical protein FRACYDRAFT_238823 [Fragilario... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1960rna1960Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications