rna1958, rna1958 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1958
Unique Name	rna1958
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2416
Alignment location	CM002458.1:573004..575674 +

Link to JBrowse

Properties


Property Name	Value
Product	cap-gly domain-containing linker protein 1
Orig transcript id	gnl\|cribi\|Naga_100002g60.4941.mrna
Orig protein id	gnl\|cribi\|Naga_100002g60.4941
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:573004..575674 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100002g60	gene1870	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1958	rna1958-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28822.1	cds1953	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:573004..575674+
coding sequence from alignment at CM002458.1:573004..575674+

mRNA sequence

>rna1958 ID=rna1958|Name=rna1958|organism=Nannochloropsis gaditana|type=mRNA|length=2416bp
GACAGACGGACAGGGAGGGACCCAGAACGAGTTGGCCACAACGGTCACTC
TTCGGATCTCATTAGGGACATATATTTTTCTGCGCTGTAAGATGTTGATA
ATCATGGCCACTGACATTTTACATGCCGCTCGCAAAGCTGACAAGCGCGA
GCTTACTTCGTGTAGTCTGAAGATGGAAGACTCATCAACGAATAAATTTG
TGTGATCTTTCAAGGTGCAAGCTTAACCAGTTCTCGACTTGGTAAATATT
ATGTATACCGATTGGAATTTTTGCAGCGTCGGGGCTTCCAGCAGTAGCTT
AACACAAGCTGTCGAGAAACCTCTAGCGTCTTATCATGAGGTTCATGAGG
GATTAGCATCAAGACAAGTGCACGAGGCACGCACAGGAAAGGTAACAAAC
GAGGAGATGACATTGGAACGACAGCTGAAGCAGAAGGTAGCCATGGACAT
TGCGCAGACACCGGCGAAGGCTTTGGCAATGCAGGGGTTCATGATGTACA
TGACAGGGTCAAGCGTCAGTATTATCTCCATCATGGTTGTAGGAATGAGT
CTTTTAAATTCAGCTCAGGCATTGGCAGCTGTTAACCAACGATTTGAGAG
GGTGGCTGATGGCCATATCAGTTTGATTCTTCCTAAGCTCATTTATGTCG
CTCTCAATTGCGTCTTCCTGGGTATGGGTCTTTACAAGTGCAGTTCGCTG
GGCTTACTTCCCAGTACTGCAGTAGACTTCATTTCCCGCCTTCCTTCTAC
AGCATACAGGGCTGAGGTCTCGAGCGTACCTGTCTAAAGGTCGAATAAAA
ACAATCATACATCGTTGTCCATCATTCTCGGGCGATCGCAAATGTTGGGG
TTGGAGGATTTTTTCCTGTTTACACGCATTGGTTATCCCATCGCCCTACG
TAAATTTTCAAATCTCATCCTACGTCGCCATGTTCTGCTATGCTTTCCAT
CTTATTTATTTCAACTCCTAAGCGCGTCGGTCATGTTTTTTTTTGCTGCG
GATTTCTGAGACAAAAGTCGATGACTTTGATAAAACAGGCTTCTTCGGTG
AGGGAGACATCAAGGGGGCCAAGGATTCAGCAATGCTGCATGAACGCTTC
TCTGCTGGCTTTTTGCCTTCCGCGTCTTTCATAGCAAATGGATTCCGCGA
GATCCCGGATTCCGCATCACAACGCCCCACAAAAGATGTAGAGGAATTTC
CGATGCGCGAGACCTGTGAAGCTCGTGGTCTTGCTGGTGAGAACAAAGGA
TCTCGATGATCCGCTGACATGTCGGTTCTCTCGGCCCTTTCCGGAAGATT
GATGTCGTCATTATTTAAGTCGTGCTCATTAGTCAGCATCGAAGTTCGCG
ACGACATGGGGCTATCTTTGAAGCCGCGCGGATCTTGGTTCTCAGTCTCC
TCATTTGAGAGGTGGATATCGGCGATCGGAGGAAAGCGGGTAGCTACCAA
GTCGCTGATACGAGCGGCCACCTGGGGCAACGAGTAATGGTCAGCAATGC
GTACGGCGAGAGTCAAGGACTTGGGAAGGGTAAGTGTCTCGGCTAGTTCT
AGCATGCGCTCTCCATTTTCAGCCGCACCCGCCTGCTGGATCATTTTTAC
GAGATGGGCGTCATAAGACGCCTGATTGCGCAATATATCGGCCTCCAGGT
CGTGATCCTCCAAGCTTTCGAAGGCCAGGACTTCCTGCTGATACAGCTTC
TGACACAAGAATGTTTTGCTCAGAAAGCGGACTTCCTCAAGTTTGAGAAG
AGCATGATCGTTGTTGCTCATTACAAAGGGGGGCTTAAAGGGCAGGGATG
ATACCAAAGGTTTGGGATTGGTTGGAGGATGCTCCTCGCCGCCTCTCAGA
AGCGAACACATGAGACTGCCATTAAAGACACCTACGGGCCAAAATGAGTC
CATTTTGTTCCTGTGCAGACGACTTGATTCCAGAATAGGCGTCCAATGCC
AAGAAAAGCCGCGCACGAGGCTTGACAGTAAACCCTCGGAGTCCATTATA
TGAAGCATGTCCGAATTGTCGAATCCCGCCCAAATTAACAAGGAGTCTGG
GGAGAGGCAGACAGGGCCTTGCGAGACTACAACAGTACGCCGTATATCTA
GGAGCTGATAGTGAAGAGACTGCGAAGCCGATCCTGTGCTATGGTTAATG
AGAGGAATTCCTCCGTGATAAAACACGGCAAGCAGTTCCCCTTGTCCCAC
CATGGTGACAACAGGGCCCGGCATGGCCAGGACGCCCTCTTGTAGCCCGC
TAAATGTGAAGAGCCGCACCCACTGTCGTGTGGTGGCCACAGCTGTCCAG
CGCGCACCAACAGCCACGCAAAGTGCTCCTTCTTTCTTGGGTAGCGTGTA
GAGCCATTGATTTTTGGCGGAGTAGTTGGCGAAGGGTCGGAAGAAAACTG
TGCTGCGCTCCTCATC

protein sequence of rna1958

>rna1958-protein ID=rna1958-protein|Name=rna1958|organism=Nannochloropsis gaditana|type=polypeptide|length=297bp
MNTPPIPFLRPTTALNVSSRPVSGAHTGNVRSASPSSTRNASIGSRSSRN
QALQASAFRDVSPSRSIRSNLFVGSNVRVLHKGHPQFGVVKFKGNVNFAE
GVWVGIALKEPVGNHDGYLKQTRYFQCAPKHGLFVRAESCDVLMNHKINE
FMSAPAQFKLRSSASDDTLQRLPEEAVRNQKHKKDDFSASSSRYRSETLS
TTINLSAAAATAFKGDLASRPSSPHSASKSRSTTNSPGLPPPSSSRISHD
LRRARQIGHSTTQSTNEPTSFENPVTTDSPDFYVSSESSFFEGLTQV

mRNA from alignment at CM002458.1:573004..575674+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1958 ID=rna1958|Name=rna1958|organism=Nannochloropsis gaditana|type=mRNA|length=2671bp|location=Sequence derived from alignment at CM002458.1:573004..575674+ (Nannochloropsis gaditana)
AGCGACCGGCCATGTCCCCTAGACACCCCTCTCACGCATGTCATTACCGG
GTTGATAACATTACAGCAGATTCTCGACTCCATATTGTTGTTGTCGATCT
CTAGGTTCACGCAGCGGAGATACAGCAGGGTCGAGCAAATCCCGTGACAT
TATTTTAAAGAGGGCCCACGGGTGAGGTGACTGCTCTCAACCTCGCGTGG
GGACCAAAAACTGAACTAAATCTAGTTGTATTTACGTGCTAGGAAATGAA
CACGCCTCCGATACCTTTTTTGAGACCCACTACGGCGTTGAACGTATCTT
CTAGGCCAGTGTCGGGCGCGCATACTGGGAATGTTCGCTCTgcgtcgccg
tcctcgacaCGCAACGCCTCTATCGGAAGCAGATCGAGCAGAAATCAGGC
ACTTCAGGCCTCTGCGTTTCGTGACGTGTCTCCTTCCCGATCTATCCGCT
CCAACCTTTTTGTGGGCTCTAACGTCCGAGTGCTGCACAAGGGCCATCCG
CAATTCGGGGTCGTGAAGTTTAAGGGCAACGTCAACTTTGCGGAGGGTGT
CTGGGTTGGTATTGCGCTGAAGGAGCCGGTGGGCAATCACGACGGTTATT
TGAAGCAAACTCGGTATTTTCAATGTGCACCCAAGCATGGATTATTCGTC
CGCGCTGAAAGCTGCGACGTCTTAATGAATCACAAGATCAACGAGTTTAT
GAGTGCACCTGCTCAATTTAAGTTGCGATCCTCTGCTTCCGATGATACCT
TGCAACGGCTCCCAGAGGAAGCCGTTCGCAATCAAAAGCATAAGAAGGAT
GATTTCAGCGCCAGTTCATCTCGTTACCGTTCGGAAACTCTTTCTACAAC
GATTAACTTGAGTGCTGCTGCGGCGACTGCTTTCAAAGGGGACTTAGCAA
GTAGACCAAGCTCCCCACACAGTGCCTCGAAAAGTAGGAGTACAACAAAT
TCTCCAGGCCTGCCACCCCCATCATCTTCAAGAATTAGCCACGATCTCCG
CCGAGCACGCCAAATCGGCCATTCGACCACCCAAAGCACAAACGAGCCTA
CCAGCTTTGAAAATCCTGTCACGACTGATTCACCTGATTTTTATGTATCC
AGTGAGAGCTCTTTTTTTGAGGGTCTCACGCAGGTATGAATTTGTGGAAA
CGGAGAATAAGTTGAGGGAGTAGACTCATGAAAGCGCAAATATAGCGGTG
TTCCAGTCGGTCCCAGCGTATCTCCTAtatccatttcccccccgaAATAT
ACTACGGTGTGGAAATTTTTCGGAAGTATCCTTCCCAAGATTTACCACTC
GGCGAGGAATTCATACTTAGTACACTTTCTTTTCACCTTGCATCCAATGG
AAACAGACCTTACTGCATTCAGAGGCCTTCAAGGAGAGAATTATTTCaaa
agtgaaggaagaaatCGCTAATGACAtaaagaaaaggatggacGAAATCT
CAGGCGAGACAGCTAGTTTACAATCATCGTTGTTGCGCGAAGTAAAGGGC
ATGGCGAATGTTGTCGGTGAAAGTTTTCGACAGATTGAACGCAAGGTATT
GCTCCTACTTGTCTTCTGGAAGCGCAACAGATGAGCTAACACATTTTTCC
TTTTATTTACAATTGTAGATTGCGAAGATAGGCGAAGTGATCGACGCATC
GGCAATTGAAGATGgtcgggagaaagaggcgagagAACAGAGAATTGCAC
TCAATTCTATTTTGGAACTAGCCTTAATGACGAAAGGACAATTGCTCGCG
GAAGTGTATCACCACGAACAAGCAATTAAACAATTACGTTTAACGACAAG
CTGTATTTGACTTTTGCGATGAGGCGACAATGCATCAAGATTTAATGGTA
GGGACGGCCGCGAATAGTTCCAAAACAAAACGGTTCAAAACCTGGAGATG
ACTGCATGCCGATCAATGAGTGGCTTTATTGTACGTAGCAAGCACTTTAT
TTGTCCACCGTTTACTACTTCGGCACTTCAATCGAGCTAGTGGTTTTATG
GCTTTTTTCGTTGTGAGGCGTGCAAATTGCAACAAGGGCAGAAGAGTAGA
AATGGACACTATGGAGGGGGCTCAAAAGCGATGTGGTCAGAGACGTTTTC
AATTGAAGGGGTGCCACGAAAAGTCTCTCTTTTGATATTAATCCACCGTT
GCTCCTATTGATTGCTGCGACCTCTAAAGCACTTTCCAGATCTACCCGAT
CAATGGCGCTCTTCAACCTGTTTTGCAATTTTTTCTTCGGGCATACGTAT
GATATAAATATATCATTAAGCTGAATATGTATTTGCACCGATTTCCATCC
AAGTAAAAGCACTAATGGCACAACTTTTTAACGAAATCAGAGCGTCATAT
TCGGGAACCGTACGTACATCGACAAGATCCATGTTTctagcctcctccac
gagaTTCAAGTGTGATGACATAAATGTATGGGGGTTAGTGTCCCATTTAC
GTTCAATGAAGTCAAATAGCTTCGCCTGTTTGTGTCTTGCGCTTTGTGGC
TGCGAAAAGCCGTCTGTGTTACTGCGTGTCCAATTCTCGCTATTAACAAT
TCTTTTTCGCTTGTTTATGCTGTTCAAAACCGCCGCGATTGCCCTTGACA
CATCGGGCATATAGCGCAAAAGGCTTCTTTTCCGCTCCTTCACGTCCCTA
AGGATTATCCAGGATAGGGCG

Coding sequence (CDS) from alignment at CM002458.1:573004..575674+

>rna1958 ID=rna1958|Name=rna1958|organism=Nannochloropsis gaditana|type=CDS|length=894bp|location=Sequence derived from alignment at CM002458.1:573004..575674+ (Nannochloropsis gaditana)
ATGAACACGCCTCCGATACCTTTTTTGAGACCCACTACGGCGTTGAACGT
ATCTTCTAGGCCAGTGTCGGGCGCGCATACTGGGAATGTTCGCTCTgcgt
cgccgtcctcgacaCGCAACGCCTCTATCGGAAGCAGATCGAGCAGAAAT
CAGGCACTTCAGGCCTCTGCGTTTCGTGACGTGTCTCCTTCCCGATCTAT
CCGCTCCAACCTTTTTGTGGGCTCTAACGTCCGAGTGCTGCACAAGGGCC
ATCCGCAATTCGGGGTCGTGAAGTTTAAGGGCAACGTCAACTTTGCGGAG
GGTGTCTGGGTTGGTATTGCGCTGAAGGAGCCGGTGGGCAATCACGACGG
TTATTTGAAGCAAACTCGGTATTTTCAATGTGCACCCAAGCATGGATTAT
TCGTCCGCGCTGAAAGCTGCGACGTCTTAATGAATCACAAGATCAACGAG
TTTATGAGTGCACCTGCTCAATTTAAGTTGCGATCCTCTGCTTCCGATGA
TACCTTGCAACGGCTCCCAGAGGAAGCCGTTCGCAATCAAAAGCATAAGA
AGGATGATTTCAGCGCCAGTTCATCTCGTTACCGTTCGGAAACTCTTTCT
ACAACGATTAACTTGAGTGCTGCTGCGGCGACTGCTTTCAAAGGGGACTT
AGCAAGTAGACCAAGCTCCCCACACAGTGCCTCGAAAAGTAGGAGTACAA
CAAATTCTCCAGGCCTGCCACCCCCATCATCTTCAAGAATTAGCCACGAT
CTCCGCCGAGCACGCCAAATCGGCCATTCGACCACCCAAAGCACAAACGA
GCCTACCAGCTTTGAAAATCCTGTCACGACTGATTCACCTGATTTTTATG
TATCCAGTGAGAGCTCTTTTTTTGAGGGTCTCACGCAGGTATGA

Synonyms

Publications