EWM28822.1, cds1953 (CDS) Nannochloropsis gaditana

Overview
NameEWM28822.1
Unique Namecds1953
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:573249..574142 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28822.1
Productcap-gly domain-containing linker protein 1
Orig transcript idgnl|cribi|Naga_100002g60.4941.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:573249..574142 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
GO:0010970transport along microtubule
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
Vocabulary: Cellular Component
TermDefinition
GO:0005856cytoskeleton
GO:0005869dynactin complex
Vocabulary: INTERPRO
TermDefinition
IPR027663DCTN1
IPR000938CAP-Gly_domain
Homology
BLAST of EWM28822.1 vs. NCBI_GenBank
Match: gi|585111245|gb|EWM28822.1| (cap-gly domain-containing linker protein 1 [Nannochloropsis gaditana])

HSP 1 Score: 604.749 bits (1558), Expect = 0.000e+0
Identity = 297/297 (100.00%), Postives = 297/297 (100.00%), Query Frame = 0
Query:    1 MNTPPIPFLRPTTALNVSSRPVSGAHTGNVRSASPSSTRNASIGSRSSRNQALQASAFRDVSPSRSIRSNLFVGSNVRVLHKGHPQFGVVKFKGNVNFAEGVWVGIALKEPVGNHDGYLKQTRYFQCAPKHGLFVRAESCDVLMNHKINEFMSAPAQFKLRSSASDDTLQRLPEEAVRNQKHKKDDFSASSSRYRSETLSTTINLSAAAATAFKGDLASRPSSPHSASKSRSTTNSPGLPPPSSSRISHDLRRARQIGHSTTQSTNEPTSFENPVTTDSPDFYVSSESSFFEGLTQV 297
            MNTPPIPFLRPTTALNVSSRPVSGAHTGNVRSASPSSTRNASIGSRSSRNQALQASAFRDVSPSRSIRSNLFVGSNVRVLHKGHPQFGVVKFKGNVNFAEGVWVGIALKEPVGNHDGYLKQTRYFQCAPKHGLFVRAESCDVLMNHKINEFMSAPAQFKLRSSASDDTLQRLPEEAVRNQKHKKDDFSASSSRYRSETLSTTINLSAAAATAFKGDLASRPSSPHSASKSRSTTNSPGLPPPSSSRISHDLRRARQIGHSTTQSTNEPTSFENPVTTDSPDFYVSSESSFFEGLTQV
Sbjct:    1 MNTPPIPFLRPTTALNVSSRPVSGAHTGNVRSASPSSTRNASIGSRSSRNQALQASAFRDVSPSRSIRSNLFVGSNVRVLHKGHPQFGVVKFKGNVNFAEGVWVGIALKEPVGNHDGYLKQTRYFQCAPKHGLFVRAESCDVLMNHKINEFMSAPAQFKLRSSASDDTLQRLPEEAVRNQKHKKDDFSASSSRYRSETLSTTINLSAAAATAFKGDLASRPSSPHSASKSRSTTNSPGLPPPSSSRISHDLRRARQIGHSTTQSTNEPTSFENPVTTDSPDFYVSSESSFFEGLTQV 297          
BLAST of EWM28822.1 vs. NCBI_GenBank
Match: gi|585718396|ref|XP_006825874.1| (PREDICTED: CAP-Gly domain-containing linker protein 4-like isoform X1 [Saccoglossus kowalevskii] >gi|585718400|ref|XP_006825875.1| PREDICTED: CAP-Gly domain-containing linker protein 4-like isoform X2 [Saccoglossus kowalevskii])

HSP 1 Score: 80.8777 bits (198), Expect = 1.843e-14
Identity = 34/67 (50.75%), Postives = 45/67 (67.16%), Query Frame = 0
Query:   69 SNLFVGSNVRVLHKGHPQFGVVKFKGNVNFAEGVWVGIALKEPVGNHDGYLKQTRYFQCAPKHGLFV 135
            +N+ +G  V V +KG    G VKFKG++N  EG WVG+AL EPVG H+G  + T+YF C   HGLF+
Sbjct:    5 ANVVIGQRVEVKYKGRIHRGTVKFKGSLNSVEGDWVGVALAEPVGKHNGLYRGTQYFSCKDGHGLFI 71          
BLAST of EWM28822.1 vs. NCBI_GenBank
Match: gi|923119210|ref|XP_013753079.1| (hypothetical protein AMSG_12404 [Thecamonas trahens ATCC 50062] >gi|906562101|gb|KNC55344.1| hypothetical protein AMSG_12404 [Thecamonas trahens ATCC 50062])

HSP 1 Score: 83.1889 bits (204), Expect = 4.517e-14
Identity = 38/90 (42.22%), Postives = 56/90 (62.22%), Query Frame = 0
Query:   66 SIRSNLFVGSNVRVLHKGHPQFGVVKFKGNVNFAEGVWVGIALKEPVGNHDGYLKQTRYFQCAPKHGLFVRAESCDVLMNHKINEFMSAP 155
            ++ S+L + S VRV + GH  FGV++F G   FA G+WVG+ ++EPVG HDG     RYFQ   KH LFVR     V++   ++  +++P
Sbjct:  181 AVASSLVLDSVVRVSNTGH--FGVIRFVGETKFAPGLWVGLEMEEPVGKHDGLRDGVRYFQARYKHALFVRPSRVKVILRPHVSASVASP 268          
BLAST of EWM28822.1 vs. NCBI_GenBank
Match: gi|1049281627|ref|XP_017537163.1| (PREDICTED: CAP-Gly domain-containing linker protein 1-like isoform X2 [Pygocentrus nattereri])

HSP 1 Score: 80.1073 bits (196), Expect = 4.216e-13
Identity = 56/164 (34.15%), Postives = 81/164 (49.39%), Query Frame = 0
Query:   17 VSSRPVSGAHT--GNVRSA-SPSSTRNASIGSRSSRNQALQASA----FRDVSPSRSIRSNLFVGSNVRVLHKGHPQFGVVKFKGNVNFAEGVWVGIALKEPVGNHDGYLKQTRYFQCAPKHGLFVRAESCDVLMNHKINEFMSAPAQFKLRSSASDDTLQRLP 173
            V  R  +GA T  G   SA +P++    S  +++S N A  AS       +   ++  +  L +G  V V   G  + GVV+F G  +FA+G W G+ L EP+G +DG +   RYFQC PK+GLF           HK+   +  P+  K +SS    TLQ  P
Sbjct:  123 VRERETNGAQTLSGQTSSAVTPAADGQVSAANQTSTNLATAASGSVANLSEADSAKKGKRELKLGDRVLV---GGTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGARYFQCLPKYGLFA--------PTHKVTR-IGFPSTTKAKSSRRRSTLQHSP 274          
BLAST of EWM28822.1 vs. NCBI_GenBank
Match: gi|1049281621|ref|XP_017537160.1| (PREDICTED: CAP-Gly domain-containing linker protein 1-like isoform X1 [Pygocentrus nattereri] >gi|1049281623|ref|XP_017537161.1| PREDICTED: CAP-Gly domain-containing linker protein 1-like isoform X1 [Pygocentrus nattereri] >gi|1049281625|ref|XP_017537162.1| PREDICTED: CAP-Gly domain-containing linker protein 1-like isoform X1 [Pygocentrus nattereri])

HSP 1 Score: 80.1073 bits (196), Expect = 4.767e-13
Identity = 56/164 (34.15%), Postives = 81/164 (49.39%), Query Frame = 0
Query:   17 VSSRPVSGAHT--GNVRSA-SPSSTRNASIGSRSSRNQALQASA----FRDVSPSRSIRSNLFVGSNVRVLHKGHPQFGVVKFKGNVNFAEGVWVGIALKEPVGNHDGYLKQTRYFQCAPKHGLFVRAESCDVLMNHKINEFMSAPAQFKLRSSASDDTLQRLP 173
            V  R  +GA T  G   SA +P++    S  +++S N A  AS       +   ++  +  L +G  V V   G  + GVV+F G  +FA+G W G+ L EP+G +DG +   RYFQC PK+GLF           HK+   +  P+  K +SS    TLQ  P
Sbjct:  123 VRERETNGAQTLSGQTSSAVTPAADGQVSAANQTSTNLATAASGSVANLSEADSAKKGKRELKLGDRVLV---GGTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGARYFQCLPKYGLFA--------PTHKVTR-IGFPSTTKAKSSRRRSTLQHSP 274          
BLAST of EWM28822.1 vs. NCBI_GenBank
Match: gi|1049281629|ref|XP_017537165.1| (PREDICTED: CAP-Gly domain-containing linker protein 1-like isoform X3 [Pygocentrus nattereri])

HSP 1 Score: 80.1073 bits (196), Expect = 4.851e-13
Identity = 56/164 (34.15%), Postives = 81/164 (49.39%), Query Frame = 0
Query:   17 VSSRPVSGAHT--GNVRSA-SPSSTRNASIGSRSSRNQALQASA----FRDVSPSRSIRSNLFVGSNVRVLHKGHPQFGVVKFKGNVNFAEGVWVGIALKEPVGNHDGYLKQTRYFQCAPKHGLFVRAESCDVLMNHKINEFMSAPAQFKLRSSASDDTLQRLP 173
            V  R  +GA T  G   SA +P++    S  +++S N A  AS       +   ++  +  L +G  V V   G  + GVV+F G  +FA+G W G+ L EP+G +DG +   RYFQC PK+GLF           HK+   +  P+  K +SS    TLQ  P
Sbjct:  123 VRERETNGAQTLSGQTSSAVTPAADGQVSAANQTSTNLATAASGSVANLSEADSAKKGKRELKLGDRVLV---GGTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGARYFQCLPKYGLFA--------PTHKVTR-IGFPSTTKAKSSRRRSTLQHSP 274          
BLAST of EWM28822.1 vs. NCBI_GenBank
Match: gi|1049277250|ref|XP_017579128.1| (PREDICTED: CAP-Gly domain-containing linker protein 1-like isoform X7 [Pygocentrus nattereri])

HSP 1 Score: 77.411 bits (189), Expect = 4.260e-12
Identity = 32/65 (49.23%), Postives = 42/65 (64.62%), Query Frame = 0
Query:   70 NLFVGSNVRVLHKGHPQFGVVKFKGNVNFAEGVWVGIALKEPVGNHDGYLKQTRYFQCAPKHGLF 134
             L +G  V V   G  + GVV+F G  +FA+G W G+ L EP+G +DG +  TRYFQC PK+GLF
Sbjct:  223 ELKMGDRVLV---GGTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLF 284          
BLAST of EWM28822.1 vs. NCBI_GenBank
Match: gi|1072240716|ref|XP_018412960.1| (PREDICTED: CAP-Gly domain-containing linker protein 1 [Nanorana parkeri])

HSP 1 Score: 74.3294 bits (181), Expect = 4.390e-11
Identity = 62/208 (29.81%), Postives = 96/208 (46.15%), Query Frame = 0
Query:   10 RPTTALNVSSRPVSGAHTGNVRSASPSSTRNASIGSRSSRNQALQASAFRDVSPSRSIRS---NLFVGSNVRVLHKGHPQFGVVKFKGNVNFAEGVWVGIALKEPVGNHDGYLKQTRYFQCAPKHGLFVRAESCDVL------------MNHKINEFMSAPAQFKLRSSASDDTLQRLPEEAVRNQKHKKDDFSASSSRYRSETLSTT 202
            R T+  +VSS  VS         ++ SST+  S  ++ S      + +  ++S + S++     L +G   RVL  G  + GVV+F G  +FA+G W G+ L EP+G +DG +  TRYFQC PK+GLF        +               K+    + PA  K   SAS  +       +V N+  +    + +SSRY  +   TT
Sbjct:  138 RATSPTSVSSANVSPVPAATPFKSAASSTKEPSTPAQLSNLTRTTSDSISNLSETGSVKKGERELKLGD--RVLVSG-SKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLFAPVHKVTRIGFPSTTPAKAKTTIRKVPTTPATPASLKRSPSASSISSMSSISSSVSNKPSRTGLLTETSSRYSRKISGTT 342          
BLAST of EWM28822.1 vs. NCBI_GenBank
Match: gi|733911779|ref|XP_010718445.1| (PREDICTED: CAP-Gly domain-containing linker protein 1 isoform X2 [Meleagris gallopavo])

HSP 1 Score: 74.3294 bits (181), Expect = 4.458e-11
Identity = 44/121 (36.36%), Postives = 67/121 (55.37%), Query Frame = 0
Query:   17 VSSRPVSGAHTGNVRSASPSSTRNASIGSRSSRNQALQASAFRDVSPSRSIRS---NLFVGSNVRVLHKGHPQFGVVKFKGNVNFAEGVWVGIALKEPVGNHDGYLKQTRYFQCAPKHGLF 134
            VS+ P +   TG  +  SP + +  S  S+ S      + +  ++S + S++     L +G  V V   G  + GVV+F G  +FA+G W G+ L EP+G +DG +  TRYFQC PK+GLF
Sbjct:  158 VSASPAALPPTGIPQKTSPLAAKEHSTPSQFSNLSKTASGSVSNLSEAGSLKKGERELKIGDRVLV---GGTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLF 275          
BLAST of EWM28822.1 vs. NCBI_GenBank
Match: gi|733911783|ref|XP_010718447.1| (PREDICTED: CAP-Gly domain-containing linker protein 1 isoform X4 [Meleagris gallopavo])

HSP 1 Score: 74.3294 bits (181), Expect = 4.618e-11
Identity = 44/121 (36.36%), Postives = 67/121 (55.37%), Query Frame = 0
Query:   17 VSSRPVSGAHTGNVRSASPSSTRNASIGSRSSRNQALQASAFRDVSPSRSIRS---NLFVGSNVRVLHKGHPQFGVVKFKGNVNFAEGVWVGIALKEPVGNHDGYLKQTRYFQCAPKHGLF 134
            VS+ P +   TG  +  SP + +  S  S+ S      + +  ++S + S++     L +G  V V   G  + GVV+F G  +FA+G W G+ L EP+G +DG +  TRYFQC PK+GLF
Sbjct:  158 VSASPAALPPTGIPQKTSPLAAKEHSTPSQFSNLSKTASGSVSNLSEAGSLKKGERELKIGDRVLV---GGTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLF 275          
The following BLAST results are available for this feature:
BLAST of EWM28822.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111245|gb|EWM28822.1|0.000e+0100.00cap-gly domain-containing linker protein 1 [Nannoc... [more]
gi|585718396|ref|XP_006825874.1|1.843e-1450.75PREDICTED: CAP-Gly domain-containing linker protei... [more]
gi|923119210|ref|XP_013753079.1|4.517e-1442.22hypothetical protein AMSG_12404 [Thecamonas trahen... [more]
gi|1049281627|ref|XP_017537163.1|4.216e-1334.15PREDICTED: CAP-Gly domain-containing linker protei... [more]
gi|1049281621|ref|XP_017537160.1|4.767e-1334.15PREDICTED: CAP-Gly domain-containing linker protei... [more]
gi|1049281629|ref|XP_017537165.1|4.851e-1334.15PREDICTED: CAP-Gly domain-containing linker protei... [more]
gi|1049277250|ref|XP_017579128.1|4.260e-1249.23PREDICTED: CAP-Gly domain-containing linker protei... [more]
gi|1072240716|ref|XP_018412960.1|4.390e-1129.81PREDICTED: CAP-Gly domain-containing linker protei... [more]
gi|733911779|ref|XP_010718445.1|4.458e-1136.36PREDICTED: CAP-Gly domain-containing linker protei... [more]
gi|733911783|ref|XP_010718447.1|4.618e-1136.36PREDICTED: CAP-Gly domain-containing linker protei... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1958rna1958Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications