EWM28822.1, cds1953 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28822.1 vs. NCBI_GenBank
Match: gi|585111245|gb|EWM28822.1| (cap-gly domain-containing linker protein 1 [Nannochloropsis gaditana]) HSP 1 Score: 604.749 bits (1558), Expect = 0.000e+0 Identity = 297/297 (100.00%), Postives = 297/297 (100.00%), Query Frame = 0
Query: 1 MNTPPIPFLRPTTALNVSSRPVSGAHTGNVRSASPSSTRNASIGSRSSRNQALQASAFRDVSPSRSIRSNLFVGSNVRVLHKGHPQFGVVKFKGNVNFAEGVWVGIALKEPVGNHDGYLKQTRYFQCAPKHGLFVRAESCDVLMNHKINEFMSAPAQFKLRSSASDDTLQRLPEEAVRNQKHKKDDFSASSSRYRSETLSTTINLSAAAATAFKGDLASRPSSPHSASKSRSTTNSPGLPPPSSSRISHDLRRARQIGHSTTQSTNEPTSFENPVTTDSPDFYVSSESSFFEGLTQV 297
MNTPPIPFLRPTTALNVSSRPVSGAHTGNVRSASPSSTRNASIGSRSSRNQALQASAFRDVSPSRSIRSNLFVGSNVRVLHKGHPQFGVVKFKGNVNFAEGVWVGIALKEPVGNHDGYLKQTRYFQCAPKHGLFVRAESCDVLMNHKINEFMSAPAQFKLRSSASDDTLQRLPEEAVRNQKHKKDDFSASSSRYRSETLSTTINLSAAAATAFKGDLASRPSSPHSASKSRSTTNSPGLPPPSSSRISHDLRRARQIGHSTTQSTNEPTSFENPVTTDSPDFYVSSESSFFEGLTQV
Sbjct: 1 MNTPPIPFLRPTTALNVSSRPVSGAHTGNVRSASPSSTRNASIGSRSSRNQALQASAFRDVSPSRSIRSNLFVGSNVRVLHKGHPQFGVVKFKGNVNFAEGVWVGIALKEPVGNHDGYLKQTRYFQCAPKHGLFVRAESCDVLMNHKINEFMSAPAQFKLRSSASDDTLQRLPEEAVRNQKHKKDDFSASSSRYRSETLSTTINLSAAAATAFKGDLASRPSSPHSASKSRSTTNSPGLPPPSSSRISHDLRRARQIGHSTTQSTNEPTSFENPVTTDSPDFYVSSESSFFEGLTQV 297
BLAST of EWM28822.1 vs. NCBI_GenBank
Match: gi|585718396|ref|XP_006825874.1| (PREDICTED: CAP-Gly domain-containing linker protein 4-like isoform X1 [Saccoglossus kowalevskii] >gi|585718400|ref|XP_006825875.1| PREDICTED: CAP-Gly domain-containing linker protein 4-like isoform X2 [Saccoglossus kowalevskii]) HSP 1 Score: 80.8777 bits (198), Expect = 1.843e-14 Identity = 34/67 (50.75%), Postives = 45/67 (67.16%), Query Frame = 0
Query: 69 SNLFVGSNVRVLHKGHPQFGVVKFKGNVNFAEGVWVGIALKEPVGNHDGYLKQTRYFQCAPKHGLFV 135
+N+ +G V V +KG G VKFKG++N EG WVG+AL EPVG H+G + T+YF C HGLF+
Sbjct: 5 ANVVIGQRVEVKYKGRIHRGTVKFKGSLNSVEGDWVGVALAEPVGKHNGLYRGTQYFSCKDGHGLFI 71
BLAST of EWM28822.1 vs. NCBI_GenBank
Match: gi|923119210|ref|XP_013753079.1| (hypothetical protein AMSG_12404 [Thecamonas trahens ATCC 50062] >gi|906562101|gb|KNC55344.1| hypothetical protein AMSG_12404 [Thecamonas trahens ATCC 50062]) HSP 1 Score: 83.1889 bits (204), Expect = 4.517e-14 Identity = 38/90 (42.22%), Postives = 56/90 (62.22%), Query Frame = 0
Query: 66 SIRSNLFVGSNVRVLHKGHPQFGVVKFKGNVNFAEGVWVGIALKEPVGNHDGYLKQTRYFQCAPKHGLFVRAESCDVLMNHKINEFMSAP 155
++ S+L + S VRV + GH FGV++F G FA G+WVG+ ++EPVG HDG RYFQ KH LFVR V++ ++ +++P
Sbjct: 181 AVASSLVLDSVVRVSNTGH--FGVIRFVGETKFAPGLWVGLEMEEPVGKHDGLRDGVRYFQARYKHALFVRPSRVKVILRPHVSASVASP 268
BLAST of EWM28822.1 vs. NCBI_GenBank
Match: gi|1049281627|ref|XP_017537163.1| (PREDICTED: CAP-Gly domain-containing linker protein 1-like isoform X2 [Pygocentrus nattereri]) HSP 1 Score: 80.1073 bits (196), Expect = 4.216e-13 Identity = 56/164 (34.15%), Postives = 81/164 (49.39%), Query Frame = 0
Query: 17 VSSRPVSGAHT--GNVRSA-SPSSTRNASIGSRSSRNQALQASA----FRDVSPSRSIRSNLFVGSNVRVLHKGHPQFGVVKFKGNVNFAEGVWVGIALKEPVGNHDGYLKQTRYFQCAPKHGLFVRAESCDVLMNHKINEFMSAPAQFKLRSSASDDTLQRLP 173
V R +GA T G SA +P++ S +++S N A AS + ++ + L +G V V G + GVV+F G +FA+G W G+ L EP+G +DG + RYFQC PK+GLF HK+ + P+ K +SS TLQ P
Sbjct: 123 VRERETNGAQTLSGQTSSAVTPAADGQVSAANQTSTNLATAASGSVANLSEADSAKKGKRELKLGDRVLV---GGTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGARYFQCLPKYGLFA--------PTHKVTR-IGFPSTTKAKSSRRRSTLQHSP 274
BLAST of EWM28822.1 vs. NCBI_GenBank
Match: gi|1049281621|ref|XP_017537160.1| (PREDICTED: CAP-Gly domain-containing linker protein 1-like isoform X1 [Pygocentrus nattereri] >gi|1049281623|ref|XP_017537161.1| PREDICTED: CAP-Gly domain-containing linker protein 1-like isoform X1 [Pygocentrus nattereri] >gi|1049281625|ref|XP_017537162.1| PREDICTED: CAP-Gly domain-containing linker protein 1-like isoform X1 [Pygocentrus nattereri]) HSP 1 Score: 80.1073 bits (196), Expect = 4.767e-13 Identity = 56/164 (34.15%), Postives = 81/164 (49.39%), Query Frame = 0
Query: 17 VSSRPVSGAHT--GNVRSA-SPSSTRNASIGSRSSRNQALQASA----FRDVSPSRSIRSNLFVGSNVRVLHKGHPQFGVVKFKGNVNFAEGVWVGIALKEPVGNHDGYLKQTRYFQCAPKHGLFVRAESCDVLMNHKINEFMSAPAQFKLRSSASDDTLQRLP 173
V R +GA T G SA +P++ S +++S N A AS + ++ + L +G V V G + GVV+F G +FA+G W G+ L EP+G +DG + RYFQC PK+GLF HK+ + P+ K +SS TLQ P
Sbjct: 123 VRERETNGAQTLSGQTSSAVTPAADGQVSAANQTSTNLATAASGSVANLSEADSAKKGKRELKLGDRVLV---GGTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGARYFQCLPKYGLFA--------PTHKVTR-IGFPSTTKAKSSRRRSTLQHSP 274
BLAST of EWM28822.1 vs. NCBI_GenBank
Match: gi|1049281629|ref|XP_017537165.1| (PREDICTED: CAP-Gly domain-containing linker protein 1-like isoform X3 [Pygocentrus nattereri]) HSP 1 Score: 80.1073 bits (196), Expect = 4.851e-13 Identity = 56/164 (34.15%), Postives = 81/164 (49.39%), Query Frame = 0
Query: 17 VSSRPVSGAHT--GNVRSA-SPSSTRNASIGSRSSRNQALQASA----FRDVSPSRSIRSNLFVGSNVRVLHKGHPQFGVVKFKGNVNFAEGVWVGIALKEPVGNHDGYLKQTRYFQCAPKHGLFVRAESCDVLMNHKINEFMSAPAQFKLRSSASDDTLQRLP 173
V R +GA T G SA +P++ S +++S N A AS + ++ + L +G V V G + GVV+F G +FA+G W G+ L EP+G +DG + RYFQC PK+GLF HK+ + P+ K +SS TLQ P
Sbjct: 123 VRERETNGAQTLSGQTSSAVTPAADGQVSAANQTSTNLATAASGSVANLSEADSAKKGKRELKLGDRVLV---GGTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGARYFQCLPKYGLFA--------PTHKVTR-IGFPSTTKAKSSRRRSTLQHSP 274
BLAST of EWM28822.1 vs. NCBI_GenBank
Match: gi|1049277250|ref|XP_017579128.1| (PREDICTED: CAP-Gly domain-containing linker protein 1-like isoform X7 [Pygocentrus nattereri]) HSP 1 Score: 77.411 bits (189), Expect = 4.260e-12 Identity = 32/65 (49.23%), Postives = 42/65 (64.62%), Query Frame = 0
Query: 70 NLFVGSNVRVLHKGHPQFGVVKFKGNVNFAEGVWVGIALKEPVGNHDGYLKQTRYFQCAPKHGLF 134
L +G V V G + GVV+F G +FA+G W G+ L EP+G +DG + TRYFQC PK+GLF
Sbjct: 223 ELKMGDRVLV---GGTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLF 284
BLAST of EWM28822.1 vs. NCBI_GenBank
Match: gi|1072240716|ref|XP_018412960.1| (PREDICTED: CAP-Gly domain-containing linker protein 1 [Nanorana parkeri]) HSP 1 Score: 74.3294 bits (181), Expect = 4.390e-11 Identity = 62/208 (29.81%), Postives = 96/208 (46.15%), Query Frame = 0
Query: 10 RPTTALNVSSRPVSGAHTGNVRSASPSSTRNASIGSRSSRNQALQASAFRDVSPSRSIRS---NLFVGSNVRVLHKGHPQFGVVKFKGNVNFAEGVWVGIALKEPVGNHDGYLKQTRYFQCAPKHGLFVRAESCDVL------------MNHKINEFMSAPAQFKLRSSASDDTLQRLPEEAVRNQKHKKDDFSASSSRYRSETLSTT 202
R T+ +VSS VS ++ SST+ S ++ S + + ++S + S++ L +G RVL G + GVV+F G +FA+G W G+ L EP+G +DG + TRYFQC PK+GLF + K+ + PA K SAS + +V N+ + + +SSRY + TT
Sbjct: 138 RATSPTSVSSANVSPVPAATPFKSAASSTKEPSTPAQLSNLTRTTSDSISNLSETGSVKKGERELKLGD--RVLVSG-SKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLFAPVHKVTRIGFPSTTPAKAKTTIRKVPTTPATPASLKRSPSASSISSMSSISSSVSNKPSRTGLLTETSSRYSRKISGTT 342
BLAST of EWM28822.1 vs. NCBI_GenBank
Match: gi|733911779|ref|XP_010718445.1| (PREDICTED: CAP-Gly domain-containing linker protein 1 isoform X2 [Meleagris gallopavo]) HSP 1 Score: 74.3294 bits (181), Expect = 4.458e-11 Identity = 44/121 (36.36%), Postives = 67/121 (55.37%), Query Frame = 0
Query: 17 VSSRPVSGAHTGNVRSASPSSTRNASIGSRSSRNQALQASAFRDVSPSRSIRS---NLFVGSNVRVLHKGHPQFGVVKFKGNVNFAEGVWVGIALKEPVGNHDGYLKQTRYFQCAPKHGLF 134
VS+ P + TG + SP + + S S+ S + + ++S + S++ L +G V V G + GVV+F G +FA+G W G+ L EP+G +DG + TRYFQC PK+GLF
Sbjct: 158 VSASPAALPPTGIPQKTSPLAAKEHSTPSQFSNLSKTASGSVSNLSEAGSLKKGERELKIGDRVLV---GGTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLF 275
BLAST of EWM28822.1 vs. NCBI_GenBank
Match: gi|733911783|ref|XP_010718447.1| (PREDICTED: CAP-Gly domain-containing linker protein 1 isoform X4 [Meleagris gallopavo]) HSP 1 Score: 74.3294 bits (181), Expect = 4.618e-11 Identity = 44/121 (36.36%), Postives = 67/121 (55.37%), Query Frame = 0
Query: 17 VSSRPVSGAHTGNVRSASPSSTRNASIGSRSSRNQALQASAFRDVSPSRSIRS---NLFVGSNVRVLHKGHPQFGVVKFKGNVNFAEGVWVGIALKEPVGNHDGYLKQTRYFQCAPKHGLF 134
VS+ P + TG + SP + + S S+ S + + ++S + S++ L +G V V G + GVV+F G +FA+G W G+ L EP+G +DG + TRYFQC PK+GLF
Sbjct: 158 VSASPAALPPTGIPQKTSPLAAKEHSTPSQFSNLSKTASGSVSNLSEAGSLKKGERELKIGDRVLV---GGTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLF 275 The following BLAST results are available for this feature:
BLAST of EWM28822.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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