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Properties
| Property Name | Value |
|---|
| Product | Protein of unknown function DUF1077, TMEM85 |
| Orig transcript id | gnl|cribi|Naga_100002g61.4871.mrna |
| Orig protein id | gnl|cribi|Naga_100002g61.4871 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002458.1 | supercontig | CM002458.1:570063..572942 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna1957 ID=rna1957|Name=rna1957|organism=Nannochloropsis gaditana|type=mRNA|length=3920bp
CATGGCTTGCTCATCAAAATGCGAATCCCCCTGTCCACAAAAGGCGGAGG
ATTGTGATGTATCGAAAACCGCTTAGAGTGGTCACTCGAGAAAGTGTGAC
GATAAGATTCAGAGAGTACAATTTTGAAATTCTTCTGAGGTACTTGGCCA
GTCTTTTGGTCGCAAGCATAACCTGTCGAGTAGTTTCGACGATGTCGTCT
CTAGCGCAAACAAGAATGTTTCGTCATCATCTTCCCCTGCGTATGGTCTC
TCACCTATGCCTCTCACGTTACCGACAACGACGTGACAGATTATAGATCT
GTGCACCGGAACCGTGGCTGTCGATCCCACCACTCAGGGCCCTGTGAAAC
TCACGGCGGTGGACGGGACGCCTATCTGCCTGGCTCTTACTCGGGAGCAG
ACAGCTCTTGCCATCGGTATGGAATCAGGCAAGGTCGAATTCAATAGGGT
TTCTTGGGAGAACGGTTTTCCAGAGTTCCACTTCGAAGACTTTTTGGTCA
GGTGTACCTCGGCAGTACGGGATATCGCCTTGAGCCCGACAAGCAAGTGG
GCGGCTGTGGGTTCAGGGGACCTCGAATTGCGGTTGATCGAGGTACAGAG
CCGAAAAGCTACACCCTTGAGAAAGCACGACGGAGGCGTTCACAGCTTGT
GCTTTGATCCAAAGGAGGAATATCTGGTCTCGCTGGGCACTGATGGTTGC
GTCTTGATCTGGGAATTGGCTACCAAGCACTGCATTTTCAGCAAGAAAGT
TTTCGAGGGAGACAGCACCTACAATCTGCAACCTGGGATACCCAAGTCCG
CGTGGAGTCCTGACGGTTCTGTTCTAGCTCTACCCGGCTCTCGACACCCA
CAGCTGCTAGAGCGCGGGACCTGGAGAGTGGTGGACTCTTCTGCATCGCG
GCTTGCTCACACAGCCGAGATATCAGTCCTTGCTTGGGCCCCCGATGGTC
ATTTACTGGCTTCAGCTGGCGAAGACCGACGCCTTGTGATATGGGCGGTA
CCTCAATGTGGTGGTCCAGCATTATTACCGGCACAAATTTACATGGATAA
AGAAAGCGTGAACGAGGGCATAGTGGGTGCCTCGCGTTCTCGAGCGTTGC
GACAGTTACAATGGATTGAGATGCGGCAGCTGGCAGTCTTGGACTGCATG
GGCTTTTTTGGCATTAAAAATGTGCCTGAAGATGCCATATCAACTTTGTT
ATCTTCAAGTGTGCAGGTGATATCAGAATTGAAGGGCTCGAAGAGAGACG
CTGCCACGAAAGATGCAGCTCCCGGGGAGTCTCGCAGAAGGACTCAAACG
CCTGAATTGGAAAGGCATGAGGAAAAAGAAAGAGCATCCTCAAATAAAAA
CGTTGAGACTCCGGAAAAGAGAAGTTTCTCTCTCCATAGAGACAAGCACA
TAGAATCGACACATGAAGGCGGTGAAGGTTTTGAGGAAGAGGAGTCAGCT
CCTGACGACGAGCCTGGTGTCCTGGACTATGACCACATTAAGGAAGAGCG
TGAGACAATACCGCCATATTCTCACTTGCAGGGGCCATTCTTACCATCCA
GTAGCCCTGTGGATGCCCTAAAGCGCTTTTTGGTCTGGAATCTTGTTGGA
AATATTGTTTCCCAAAATTTGGGAGACCACAATGTGATCGAGATCGAGTT
CGCGGACGCGAGCCGTCGGCCCATCCGCTTTACGGACCACTACCGCTTCA
ATATGGGCTCCATGGCCGAGGAGGGGGCAATTTTTGCCAGTGCAACACTG
GATGAAATTAACCCGGACAAAGGAGATAAGCAAGTGGAGAACAAGGATGA
GGAGCGCAGCACAGTTTTCTTCCGACCCTTCGCCAACTACTCCGCCAAAA
ATCAATGGCTCTACACGCTACCCAAGAAAGAAGGAGCACTTTGCGTGGCT
GTTGGTGCGCGCTGGACAGCTGTGGCCACCACACGACAGTGGGTGCGGCT
CTTCACATTTAGCGGGCTACAAGAGGGCGTCCTGGCCATGCCGGGCCCTG
TTGTCACCATGGTGGGACAAGGGGAACTGCTTGCCGTGTTTTATCACGGA
GGAATTCCTCTCATTAACCATAGCACAGGATCGGCTTCGCAGTCTCTTCA
CTATCAGCTCCTAGATATACGGCGTACTGTTGTAGTCTCGCAAGGCCCTG
TCTGCCTCTCCCCAGACTCCTTGTTAATTTGGGCGGGATTCGACAATTCG
GACATGCTTCATATAATGGACTCCGAGGGTTTACTGTCAAGCCTCGTGCG
CGGCTTTTCTTGGCATTGGACGCCTATTCTGGAATCAAGTCGTCTGCACA
GGAACAAAATGGACTCATTTTGGCCCGTAGGTGTCTTTAATGGCAGTCTC
ATGTGTTCGCTTCTGAGAGGCGGCGAGGAGCATCCTCCAACCAATCCCAA
ACCTTTGGTATCATCCCTGCCCTTTAAGCCCCCCTTTGTAATGAGCAACA
ACGATCATGCTCTTCTCAAACTTGAGGAAGTCCGCTTTCTGAGCAAAACA
TTCTTGTGTCAGAAGCTGTATCAGCAGGAAGTCCTGGCCTTCGAAAGCTT
GGAGGATCACGACCTGGAGGCCGATATATTGCGCAATCAGGCGTCTTATG
ACGCCCATCTCGTAAAAATGATCCAGCAGGCGGGTGCGGCTGAAAATGGA
GAGCGCATGCTAGAACTAGCCGAGACACTTACCCTTCCCAAGTCCTTGAC
TCTCGCCGTACGCATTGCTGACCATTACTCGTTGCCCCAGGTGGCCGCTC
GTATCAGCGACTTGGTAGCTACCCGCTTTCCTCCGATCGCCGATATCCAC
CTCTCAAATGAGGAGACTGAGAACCAAGATCCGCGCGGCTTCAAAGATAG
CCCCATGTCGTCGCGAACTTCGATGCTGACTAATGAGCACGACTTAAATA
ATGACGACATCAATCTTCCGGAAAGGGCCGAGAGAACCGACATGTCAGCG
GATCATCGAGATCCTTTGTTCTCACCAGCAAGACCACGAGCTTCACAGGT
CTCGCGCATCGGAAATTCCTCTACATCTTTTGTGGGGCGTTGTGATGCGG
AATCCGGGATCTCGCGGAATCCATTTGCTATGAAAGACGCGGAAGGCAAA
AAGCCAGCAGAGAAGCGTTCATGCAGCATTGCTGAATCCTTGGCCCCCTT
GATGTCTCCCTCACCGAAGAAGCCTGTTTTATCAAAGTCATCGACTTTTG
TCTCAGAAATCCGCAGCAAAAAAAAACATGACCGACGCGCTTAGGAGTTG
AAATAAATAAGATGGAAAGCATAGCAGAACATGGCGACGTAGGATGAGAT
TTGAAAATTTACGTAGGGCGATGGGATAACCAATGCGTGTAAACAGGAAA
AAATCCTCCAACCCCAACATTTGCGATCGCCCGAGAATGATGGACAACGA
TGTATGATTGTTTTTATTCGACCTTTAGACAGGTACGCTCGAGACCTCAG
CCCTGTATGCTGTAGAAGGAAGGCGGGAAATGAAGTCTACTGCAGTACTG
GGAAGTAAGCCCAGCGAACTGCACTTGTAAAGACCCATACCCAGGAAGAC
GCAATTGAGAGCGACATAAATGAGCTTAGGAAGAATCAAACTGATATGGC
CATCAGCCACCCTCTCAAATCCTGTGTATGTTGTGATGAACATCCGAACC
ATCGTAATATGTGAAGTTTACTACCATCGGCGTGTTTTCAAAACAACACC
TGCACCCTAATCCTGCTGCACCAGATGCAAAGATTTAGCCGATCATGCAC
CGAATCAAAAGTGCCATACCCATGATCTCAGGAAAATTATGATCTTTTGC
TGAAACGCACCAATCATTCATGCACGCTACCTCCATCTTTTTCAAGACTT
ACGTTGGTTAACAGCTGCCAATGCCTGAGCTGAATTTAAAAGACTCATTC
CTACAACCATGATGGAGATA back to topprotein sequence of rna1957 >rna1957-protein ID=rna1957-protein|Name=rna1957|organism=Nannochloropsis gaditana|type=polypeptide|length=178bp
MYTDWNFCSVGASSSSLTQAVEKPLASYHEVHEGLASRQVHEARTGKVTN
EEMTLERQLKQKVAMDIAQTPAKALAMQGFMMYMTGSSVSIISIMVVGMS
LLNSAQALAAVNQRFERVADGHISLILPKLIYVALNCVFLGMGLYKCSSL
GLLPSTAVDFISRLPSTAYRAEVSSVPV back to topmRNA from alignment at CM002458.1:570063..572942- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna1957 ID=rna1957|Name=rna1957|organism=Nannochloropsis gaditana|type=mRNA|length=2880bp|location=Sequence derived from alignment at CM002458.1:570063..572942- (Nannochloropsis gaditana)
GACAGACGGACAGGGAGGGACCCAGAACGAGTTGGCCACAACGGTCACTC
TTCGGATCTCATTAGGGACATATATTTTTCTGCGCTGTAAGATGTTGATA
ATCATGGCCACTGACATTTTACATGCCGCTCGCAAAGCTGACAAGCGCGA
GCTTACTTCGTGTAGTCTGAAGATGGAAGACTCATCAACGAATAAATTTG
TGTGATCTTTCAAGGTGCAAGCTTAACCAGTTCTCGACTTGGTAAATATT
ATGTATACCGATTGGAATTTTTGCAGCGTCGGGGCTTCCAGCAGTAGCTT
AACACAAGCTGTCGAGAAACCTCTAGCGTCTTATCATGAGGTTCATGAGG
GATTAGCATCAAGACAAGTGCACGAGGCACGCACAGGAAAGGTAACAAAC
GAGGAGATGACATTGGAACGACAGCTGAAGCAGAAGGTAAGTAGTCTTTT
TCAGATTACCTGAAATGAAATGCTTTCTCAGCTACCCGCACTTTCTCTCC
AGTCGAAAGTGTACGTGGCGAACATGCCGATCCCTACATCCATCAAGTGG
TGCTTCAATATTTCTGAATAGAATTTATCGACGAAAGGGCCCACTTTTTT
TGAGGGGGGACATGACCACTGAGCTTCGAAGTCTCTACTCATATCACTTA
AATCGATCAATCTACTCAGGTAGCCATGGACATTGCGCAGACACCGGCGA
AGGCTTTGGCAATGCAGGGGTTCATGATGTACATGACAGGGTCAAGCGTC
AGTATTATCTCCATCATGGTTGTAGGAATGAGTCTTTTAAATTCAGCTCA
GGCATTGGCAGCTGTTAACCAACGTAAGTCTTGAAAAAGATGGAGGTAGC
GTGCATGAATGATTGGTGCGTTTCAGCAAAAGATCATAATTTTCCTGAGA
TCATGGGTATGGCACTTTTGATTCGGTGCATGATCGGCTAAATCTTTGCA
TCTGGTGCAGCAGGATTAGGGTGCAGGTGTTGTTTTGAAAACACGCCGAT
GGTAGTAAACTTCACATATTACGATGGTTCGGATGTTCATCACAACATAC
ACAGGATTTGAGAGGGTGGCTGATGGCCATATCAGTTTGATTCTTCCTAA
GCTCATTTATGTCGCTCTCAATTGCGTCTTCCTGGGTATGGGTCTTTACA
AGTGCAGTTCGCTGGGCTTACTTCCCAGTACTGCAGTAGACTTCATTTCC
CGCCTTCCTTCTACAGCATACAGGGCTGAGGTCTCGAGCGTACCTGTCTA
AAGGTCGAATAAAAACAATCATACATCGTTGTCCATCATTCTCGGGCGAT
CGCAAATGTTGGGGTTGGAGGATTTTTTCCTGTTTACACGCATTGGTTAT
CCCATCGCCCTACGTAAATTTTCAAATCTCATCCTACGTCGCCATGTTCT
GCTATGCTTTCCATCTTATTTATTTCAACTCCTAAGCGCGTCGGTCATGT
TTTTTTTTGCTGCGGATTTCTGAGACAAAAGTCGATGACTTTGATAAAAC
AGGCTTCTTCGGTGAGGGAGACATCAAGGGGGCCAAGGATTCAGCAATGC
TGCATGAACGCTTCTCTGCTGGCTTTTTGCCTTCCGCGTCTTTCATAGCA
AATGGATTCCGCGAGATCCCGGATTCCGCATCACAACGCCCCACAAAAGA
TGTAGAGGAATTTCCGATGCGCGAGACCTGTGAAGCTCGTGGTCTTGCTG
GTGAGAACAAAGGATCTCGATGATCCGCTGACATGTCGGTTCTCTCGGCC
CTTTCCGGAAGATTGATGTCGTCATTATTTAAGTCGTGCTCATTAGTCAG
CATCGAAGTTCGCGACGACATGGGGCTATCTTTGAAGCCGCGCGGATCTT
GGTTCTCAGTCTCCTCATTTGAGAGGTGGATATCGGCGATCGGAGGAAAG
CGGGTAGCTACCAAGTCGCTGATACGAGCGGCCACCTGGGGCAACGAGTA
ATGGTCAGCAATGCGTACGGCGAGAGTCAAGGACTTGGGAAGGGTAAGTG
TCTCGGCTAGTTCTAGCATGCGCTCTCCATTTTCAGCCGCACCCGCCTGC
TGGATCATTTTTACGAGATGGGCGTCATAAGACGCCTGATTGCGCAATAT
ATCGGCCTCCAGGTCGTGATCCTCCAAGCTTTCGAAGGCCAGGACTTCCT
GCTGATACAGCTTCTGACACAAGAATGTTTTGCTCAGAAAGCGGACTTCC
TCAAGTTTGAGAAGAGCATGATCGTTGTTGCTCATTACAAAGGGGGGCTT
AAAGGGCAGGGATGATACCAAAGGTTTGGGATTGGTTGGAGGATGCTCCT
CGCCGCCTCTCAGAAGCGAACACATGAGACTGCCATTAAAGACACCTACG
GGCCAAAATGAGTCCATTTTGTTCCTGTGCAGACGACTTGATTCCAGAAT
AGGCGTCCAATGCCAAGAAAAGCCGCGCACGAGGCTTGACAGTAAACCCT
CGGAGTCCATTATATGAAGCATGTCCGAATTGTCGAATCCCGCCCAAATT
AACAAGGAGTCTGGGGAGAGGCAGACAGGGCCTTGCGAGACTACAACAGT
ACGCCGTATATCTAGGAGCTGATAGTGAAGAGACTGCGAAGCCGATCCTG
TGCTATGGTTAATGAGAGGAATTCCTCCGTGATAAAACACGGCAAGCAGT
TCCCCTTGTCCCACCATGGTGACAACAGGGCCCGGCATGGCCAGGACGCC
CTCTTGTAGCCCGCTAAATGTGAAGAGCCGCACCCACTGTCGTGTGGTGG
CCACAGCTGTCCAGCGCGCACCAACAGCCACGCAAAGTGCTCCTTCTTTC
TTGGGTAGCGTGTAGAGCCATTGATTTTTGGCGGAGTAGTTGGCGAAGGG
TCGGAAGAAAACTGTGCTGCGCTCCTCATC back to topCoding sequence (CDS) from alignment at CM002458.1:570063..572942- >rna1957 ID=rna1957|Name=rna1957|organism=Nannochloropsis gaditana|type=CDS|length=1611bp|location=Sequence derived from alignment at CM002458.1:570063..572942- (Nannochloropsis gaditana)
GATTTGAGAGGGTGGCTGATGGCCATATCAGTTTGATTCTTCCTAAGCTC
ATTTATGTCGCTCTCAATTGCGTCTTCCTGGGTATGGGTCTTTACAAGTG
CAGTTCGCTGGGCTTACTTCCCAGTACTGCAGTAGACTTCATTTCCCGCC
TTCCTTCTACAGCATACAGGGCTGAGGTCTCGAGCGTACCTGTCTAAGTA
GCCATGGACATTGCGCAGACACCGGCGAAGGCTTTGGCAATGCAGGGGTT
CATGATGTACATGACAGGGTCAAGCGTCAGTATTATCTCCATCATGGTTG
TAGGAATGAGTCTTTTAAATTCAGCTCAGGCATTGGCAGCTGTTAACCAA
CATGTATACCGATTGGAATTTTTGCAGCGTCGGGGCTTCCAGCAGTAGCT
TAACACAAGCTGTCGAGAAACCTCTAGCGTCTTATCATGAGGTTCATGAG
GGATTAGCATCAAGACAAGTGCACGAGGCACGCACAGGAAAGGTAACAAA
CGAGGAGATGACATTGGAACGACAGCTGAAGCAGAAGGATTTGAGAGGGT
GGCTGATGGCCATATCAGTTTGATTCTTCCTAAGCTCATTTATGTCGCTC
TCAATTGCGTCTTCCTGGGTATGGGTCTTTACAAGTGCAGTTCGCTGGGC
TTACTTCCCAGTACTGCAGTAGACTTCATTTCCCGCCTTCCTTCTACAGC
ATACAGGGCTGAGGTCTCGAGCGTACCTGTCTAAGTAGCCATGGACATTG
CGCAGACACCGGCGAAGGCTTTGGCAATGCAGGGGTTCATGATGTACATG
ACAGGGTCAAGCGTCAGTATTATCTCCATCATGGTTGTAGGAATGAGTCT
TTTAAATTCAGCTCAGGCATTGGCAGCTGTTAACCAACATGTATACCGAT
TGGAATTTTTGCAGCGTCGGGGCTTCCAGCAGTAGCTTAACACAAGCTGT
CGAGAAACCTCTAGCGTCTTATCATGAGGTTCATGAGGGATTAGCATCAA
GACAAGTGCACGAGGCACGCACAGGAAAGGTAACAAACGAGGAGATGACA
TTGGAACGACAGCTGAAGCAGAAGGATTTGAGAGGGTGGCTGATGGCCAT
ATCAGTTTGATTCTTCCTAAGCTCATTTATGTCGCTCTCAATTGCGTCTT
CCTGGGTATGGGTCTTTACAAGTGCAGTTCGCTGGGCTTACTTCCCAGTA
CTGCAGTAGACTTCATTTCCCGCCTTCCTTCTACAGCATACAGGGCTGAG
GTCTCGAGCGTACCTGTCTAAGTAGCCATGGACATTGCGCAGACACCGGC
GAAGGCTTTGGCAATGCAGGGGTTCATGATGTACATGACAGGGTCAAGCG
TCAGTATTATCTCCATCATGGTTGTAGGAATGAGTCTTTTAAATTCAGCT
CAGGCATTGGCAGCTGTTAACCAACATGTATACCGATTGGAATTTTTGCA
GCGTCGGGGCTTCCAGCAGTAGCTTAACACAAGCTGTCGAGAAACCTCTA
GCGTCTTATCATGAGGTTCATGAGGGATTAGCATCAAGACAAGTGCACGA
GGCACGCACAGGAAAGGTAACAAACGAGGAGATGACATTGGAACGACAGC
TGAAGCAGAAG back to top
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