EWM28752.1, cds1952 (CDS) Nannochloropsis gaditana

Overview
NameEWM28752.1
Unique Namecds1952
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:572507..572692 -
Alignment locationCM002458.1:572120..572273 -
Alignment locationCM002458.1:571692..571888 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28752.1
ProductProtein of unknown function DUF1077, TMEM85
Orig transcript idgnl|cribi|Naga_100002g61.4871.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:572507..572692 -
CM002458.1supercontigCM002458.1:572120..572273 -
CM002458.1supercontigCM002458.1:571692..571888 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR009445DUF1077_TMEM85
Homology
BLAST of EWM28752.1 vs. NCBI_GenBank
Match: gi|585111175|gb|EWM28752.1| (Protein of unknown function DUF1077, TMEM85 [Nannochloropsis gaditana])

HSP 1 Score: 367.851 bits (943), Expect = 7.091e-129
Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 0
Query:    1 MYTDWNFCSVGASSSSLTQAVEKPLASYHEVHEGLASRQVHEARTGKVTNEEMTLERQLKQKVAMDIAQTPAKALAMQGFMMYMTGSSVSIISIMVVGMSLLNSAQALAAVNQRFERVADGHISLILPKLIYVALNCVFLGMGLYKCSSLGLLPSTAVDFISRLPSTAYRAEVSSVPV 178
            MYTDWNFCSVGASSSSLTQAVEKPLASYHEVHEGLASRQVHEARTGKVTNEEMTLERQLKQKVAMDIAQTPAKALAMQGFMMYMTGSSVSIISIMVVGMSLLNSAQALAAVNQRFERVADGHISLILPKLIYVALNCVFLGMGLYKCSSLGLLPSTAVDFISRLPSTAYRAEVSSVPV
Sbjct:    1 MYTDWNFCSVGASSSSLTQAVEKPLASYHEVHEGLASRQVHEARTGKVTNEEMTLERQLKQKVAMDIAQTPAKALAMQGFMMYMTGSSVSIISIMVVGMSLLNSAQALAAVNQRFERVADGHISLILPKLIYVALNCVFLGMGLYKCSSLGLLPSTAVDFISRLPSTAYRAEVSSVPV 178          
BLAST of EWM28752.1 vs. NCBI_GenBank
Match: gi|325184922|emb|CCA19414.1| (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 116.701 bits (291), Expect = 8.730e-30
Identity = 62/146 (42.47%), Postives = 87/146 (59.59%), Query Frame = 0
Query:   33 EGLASRQVHEARTGKVTNEEMTLERQLKQKVAMDIAQTPAKALAMQGFMMYMTGSSVSIISIMVVGMSLLNSAQALAAVNQRFERVADGHISLILPKLIYVALNCVFLGMGLYKCSSLGLLPSTAVDFISRLP---STAYRAEVSS 175
            +G+ S +V      K  +      R+LK+K A +I   P K+L    FMM+M+GSS++I SIMV GM ++N+ ++L  VN  F+ V DG I L  PKLIY   NC+ + + +YKC SLGLLP+T+ D+   LP   ST Y   V S
Sbjct:   31 KGIKSEKVTATTIAKAADSM----RELKKKRASEIGMAPFKSLLQTAFMMWMSGSSINIFSIMVTGMVVMNTIKSLFDVNNAFDTVNDGVIDLTQPKLIYCLGNCISIALAIYKCGSLGLLPTTSADWTWLLPVKLSTEYSVFVGS 172          
BLAST of EWM28752.1 vs. NCBI_GenBank
Match: gi|1173957715|gb|OQS04193.1| (hypothetical protein THRCLA_03559 [Thraustotheca clavata])

HSP 1 Score: 114.39 bits (285), Expect = 3.947e-29
Identity = 57/144 (39.58%), Postives = 90/144 (62.50%), Query Frame = 0
Query:   36 ASRQVHEARTGKVTNEEMTLERQLKQKVAMDIAQTPAKALAMQGFMMYMTGSSVSIISIMVVGMSLLNSAQALAAVNQRFERVADGHISLILPKLIYVALNCVFLGMGLYKCSSLGLLPSTAVDFISRLP-STAYRAEVSSVPV 178
            +++ V +++ G VT +      +LK+K A D+A  P K L   GFMM+M+GSS++I SIM+  M+ +N  +AL  V+  F  + DG + L   KLI++A N V +G+ LYKC ++GLLP+T+ D+   LP   A  A  ++VP+
Sbjct:   21 SNKHVSDSQNGTVTAKGADNTLELKKKRANDVATAPFKGLFQTGFMMWMSGSSINIFSIMITAMAFVNPVKALFNVHGAFTGLDDGKLDLTQFKLIFIAANFVAIGVALYKCGTMGLLPTTSCDWTWLLPIKQAIEASAAAVPI 164          
BLAST of EWM28752.1 vs. NCBI_GenBank
Match: gi|635371340|emb|CCI40495.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 112.849 bits (281), Expect = 2.743e-28
Identity = 55/121 (45.45%), Postives = 78/121 (64.46%), Query Frame = 0
Query:   58 QLKQKVAMDIAQTPAKALAMQGFMMYMTGSSVSIISIMVVGMSLLNSAQALAAVNQRFERVADGHISLILPKLIYVALNCVFLGMGLYKCSSLGLLPSTAVDFISRLP---STAYRAEVSS 175
            +LK+K A +I   P K+L    FMM+M+GSS++I SIMV GM ++N+ ++L  VN  F+ V DG + L  PKL+Y   NC+ + + +YKC SLGLLP+T+ D+   LP   ST Y   V S
Sbjct:   52 ELKKKRASEIGMAPFKSLLQTAFMMWMSGSSINIFSIMVTGMVVMNTLKSLFDVNNAFDTVNDGRVDLTQPKLLYFLGNCISIALAVYKCGSLGLLPTTSADWTWLLPIKQSTEYSVFVGS 172          
BLAST of EWM28752.1 vs. NCBI_GenBank
Match: gi|1173948333|gb|OQR96471.1| (hypothetical protein ACHHYP_15807 [Achlya hypogyna])

HSP 1 Score: 111.309 bits (277), Expect = 7.931e-28
Identity = 56/144 (38.89%), Postives = 89/144 (61.81%), Query Frame = 0
Query:   36 ASRQVHEARTGKVTNEEMTLERQLKQKVAMDIAQTPAKALAMQGFMMYMTGSSVSIISIMVVGMSLLNSAQALAAVNQRFERVADGHISLILPKLIYVALNCVFLGMGLYKCSSLGLLPSTAVDFISRLP-STAYRAEVSSVPV 178
            +++   +  +G VT +      +LK+K A ++A  P K L   GFMM+M+GSS++I SIM+  M+ +N  +AL  +N  F  + DG + L+  KLI+VA N V +G+ LYKC ++GLLP+T+ D+   LP   A  A  ++VP+
Sbjct:   20 SNKHTFDEPSGAVTAKGGDNTLELKKKRANEVATAPFKGLFQTGFMMWMSGSSINIFSIMITAMAFVNPVKALFNINGAFAALDDGKLDLLQFKLIFVASNFVAIGVALYKCGTMGLLPTTSSDWTWLLPVKEAVEASSAAVPI 163          
BLAST of EWM28752.1 vs. NCBI_GenBank
Match: gi|953500409|emb|CEG38118.1| (Predicted membrane protein [Plasmopara halstedii])

HSP 1 Score: 111.309 bits (277), Expect = 1.011e-27
Identity = 52/108 (48.15%), Postives = 77/108 (71.30%), Query Frame = 0
Query:   58 QLKQKVAMDIAQTPAKALAMQGFMMYMTGSSVSIISIMVVGMSLLNSAQALAAVNQRFERVADGHISLILPKLIYVALNCVFLGMGLYKCSSLGLLPSTAVDFISRLP 165
            +LK+K AM+I   P K+L   GFMM+M+G+S++I SIM+ GM ++N+A++L  +N  F  V DG ISL  PK IY+A + +   MG+YKCS++GLLP+T+ D+   LP
Sbjct:   60 ELKKKRAMEIGMAPFKSLLQTGFMMWMSGNSINIFSIMITGMIVMNTAKSLFNMNNAFASVNDGVISLTQPKAIYMAGSLIGAAMGVYKCSNMGLLPTTSADWTWLLP 167          
BLAST of EWM28752.1 vs. NCBI_GenBank
Match: gi|698795990|ref|XP_009831024.1| (hypothetical protein H257_07261 [Aphanomyces astaci] >gi|574113694|gb|ETV79183.1| hypothetical protein H257_07261 [Aphanomyces astaci])

HSP 1 Score: 108.227 bits (269), Expect = 1.316e-26
Identity = 58/139 (41.73%), Postives = 81/139 (58.27%), Query Frame = 0
Query:   41 HEARTGKVTNEEMTLERQLKQKVAMDIAQTPAKALAMQGFMMYMTGSSVSIISIMVVGMSLLNSAQALAAVNQRFERVADGHISLILPKLIYVALNCVFLGMGLYKCSSLGLLPSTAVDFISRLP-STAYRAEVSSVPV 178
            H A T    N+ +     LKQK A +IAQ P K L   G MMYM+GSS++I SIM+  M++ N  +AL  VN  F  + DG ++L   K+ +V  N V +G+ LYKC ++GLLP+T+ D+   LP   A     S+ PV
Sbjct:   29 HNAVTTTSANDTL----DLKQKRASEIAQAPFKGLFQTGLMMYMSGSSINIFSIMITAMAIFNPLKALFNVNGAFASLEDGKMNLAQSKVTFVVANLVAIGVALYKCGTMGLLPTTSADWTWLLPVKQALETSASATPV 163          
BLAST of EWM28752.1 vs. NCBI_GenBank
Match: gi|673034284|ref|XP_008871103.1| (hypothetical protein H310_07505 [Aphanomyces invadans] >gi|574473074|gb|ETW00078.1| hypothetical protein H310_07505 [Aphanomyces invadans])

HSP 1 Score: 107.842 bits (268), Expect = 1.581e-26
Identity = 56/139 (40.29%), Postives = 81/139 (58.27%), Query Frame = 0
Query:   41 HEARTGKVTNEEMTLERQLKQKVAMDIAQTPAKALAMQGFMMYMTGSSVSIISIMVVGMSLLNSAQALAAVNQRFERVADGHISLILPKLIYVALNCVFLGMGLYKCSSLGLLPSTAVDFISRLP-STAYRAEVSSVPV 178
            H A T    N+ +     LKQK A +IAQ P K L   G MMYM+GSS++I SIM+  M++ N  +AL  VN  F  + DG ++L+  K+ +V  N V + + LYKC ++GLLP+T+ D+   LP   A     S+ P+
Sbjct:   29 HNAVTTTSANDTL----DLKQKRATEIAQAPFKGLFQTGLMMYMSGSSINIFSIMITAMAIFNPLKALFNVNGAFASLEDGKLNLVQAKITFVVANLVAIAVALYKCGTMGLLPTTSADWTWLLPIKHALETSASATPI 163          
BLAST of EWM28752.1 vs. NCBI_GenBank
Match: gi|301119955|ref|XP_002907705.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262106217|gb|EEY64269.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 107.842 bits (268), Expect = 1.769e-26
Identity = 49/108 (45.37%), Postives = 76/108 (70.37%), Query Frame = 0
Query:   58 QLKQKVAMDIAQTPAKALAMQGFMMYMTGSSVSIISIMVVGMSLLNSAQALAAVNQRFERVADGHISLILPKLIYVALNCVFLGMGLYKCSSLGLLPSTAVDFISRLP 165
            +LK+K AM+I   P K+L    FMM+M+G+S++I SIM+ GM ++N+A++L  +N  F  V+DG + L  PK +Y+A + V   MG+YKCS++GLLP+T+ D+   LP
Sbjct:   50 ELKKKRAMEIGMAPFKSLLQTAFMMWMSGNSINIFSIMITGMIVMNTAKSLFNMNNAFASVSDGVVDLTQPKAVYMAGSLVGAAMGVYKCSNMGLLPTTSADWTWLLP 157          
BLAST of EWM28752.1 vs. NCBI_GenBank
Match: gi|813119762|ref|XP_012196363.1| (hypothetical protein SPRG_02397 [Saprolegnia parasitica CBS 223.65] >gi|641538876|gb|KDO32697.1| hypothetical protein SPRG_02397 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 107.071 bits (266), Expect = 2.925e-26
Identity = 54/144 (37.50%), Postives = 87/144 (60.42%), Query Frame = 0
Query:   36 ASRQVHEARTGKVTNEEMTLERQLKQKVAMDIAQTPAKALAMQGFMMYMTGSSVSIISIMVVGMSLLNSAQALAAVNQRFERVADGHISLILPKLIYVALNCVFLGMGLYKCSSLGLLPSTAVDFISRLP-STAYRAEVSSVPV 178
            +++   +   G V  + +    +LK+K A ++A  P K L   GFMM+M+GSS++I SIM+  M+ +N  +AL  +N  F  + DG + L+  KLI++A N V + + LYKC ++GLLP+T+ D+   LP   A  A  ++VPV
Sbjct:   22 SNKHTLDESHGAVATKGVDNTLELKKKRANEVATAPFKGLFQTGFMMWMSGSSINIFSIMITAMAFVNPVKALFNINGAFAALDDGKLDLLQFKLIFIACNFVAIAVALYKCGTMGLLPTTSSDWTWLLPIKQAVEASAAAVPV 165          
The following BLAST results are available for this feature:
BLAST of EWM28752.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111175|gb|EWM28752.1|7.091e-129100.00Protein of unknown function DUF1077, TMEM85 [Nanno... [more]
gi|325184922|emb|CCA19414.1|8.730e-3042.47conserved hypothetical protein [Albugo laibachii N... [more]
gi|1173957715|gb|OQS04193.1|3.947e-2939.58hypothetical protein THRCLA_03559 [Thraustotheca c... [more]
gi|635371340|emb|CCI40495.1|2.743e-2845.45unnamed protein product [Albugo candida][more]
gi|1173948333|gb|OQR96471.1|7.931e-2838.89hypothetical protein ACHHYP_15807 [Achlya hypogyna... [more]
gi|953500409|emb|CEG38118.1|1.011e-2748.15Predicted membrane protein [Plasmopara halstedii][more]
gi|698795990|ref|XP_009831024.1|1.316e-2641.73hypothetical protein H257_07261 [Aphanomyces astac... [more]
gi|673034284|ref|XP_008871103.1|1.581e-2640.29hypothetical protein H310_07505 [Aphanomyces invad... [more]
gi|301119955|ref|XP_002907705.1|1.769e-2645.37conserved hypothetical protein [Phytophthora infes... [more]
gi|813119762|ref|XP_012196363.1|2.925e-2637.50hypothetical protein SPRG_02397 [Saprolegnia paras... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1957rna1957Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications