rna1954, rna1954 (mRNA) Nannochloropsis gaditana

Overview
Namerna1954
Unique Namerna1954
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2260
Alignment locationCM002458.1:566218..567282 -

Link to JBrowse

Properties
Property NameValue
Productputative trna pseudouridine synthase 1
Orig transcript idgnl|cribi|Naga_100002g63.4902.mrna
Orig protein idgnl|cribi|Naga_100002g63.4902
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:566218..567282 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100002g63gene1867Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28783.1cds1949Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1954rna1954-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1954 ID=rna1954|Name=rna1954|organism=Nannochloropsis gaditana|type=mRNA|length=2260bp
CTCCTGACTACTGCTCTTCCTTACTCAATTTCACCATGTGCGAGCGTCAA
GATGAAACTGTACGAGACTGGCCTTTGATAAGCTTTGTTCACAGAAACCT
CATTGCGCTTCCTTCACACAGGGGCACTTTCACGTAAAACAGGAGCCTCG
TTGGGCCGTGGAGGGTGCTTTTTGTTATGACATACCGCCATTATGGCCAT
TTCAGAGCCTTATTTTCCATTATTTTTCTCGGGAAATATCTTTCAACCAG
TGGCTTTATACAAAAGCATCACGTGTCAATTTTTGGGACGTCGTCGTCGA
GCAACAAACCAACCAGCACTCCTCTGTATCGATACGCACCGTCCGTGAGT
CAACTTTTCATTGCCAGCACTCCATTCCATGAGAAACTTCCAATTGTGTC
CGCTGACCGAAACTTGGCCGAAACGTCATCTGTGATTACGTCAAGCAGTG
AGAAGAATATCGCACAAGTAGTCACTCAGCTCCGGCAAGTCATGGATCCT
GATTTGGGCTCTGATGTCGTCACTCTAGGCTTTATCAAGAACCTGACTAT
TGACGGAGCGACTGGCAGAGTCAGTTTTGTTCTAGAACTCACAACTCCCG
CATGCCCTGTAAAAGATGACCTCAAGGCACAGGCTATGCAAGTTGTCGAA
ACACTTCCTTGGGTTACGAAAGCTGATGTTATTCTGTCCGCACGGCCAAT
CACAGCGGAAAAAAGCGCTGGGGGAGATATGAAGGCCACTGGTTTGTCAC
TGGTGAATAATGTGATAGCTGTTTCCAGTTGCAAAGGAGGTGTGGGAAAA
TCTACCACCGCTGTCAATCTTGCATTTGCGTTGGACCGGCAGGGCGCCAA
GGTCGGCATTTTGGACGCTGACATCTATGGTCCAAGTCTCCCTACAATGG
TAGCACCCGATACAGAGATGGTGGAATTTGTGGAAAGTCAGATTCGACCG
ATGATCCGACAGACCGGATTGGATGCTGAGGGACAACCGAAAGGGGTGAA
ACTTATGAGTTTCGGATACGTAAATCCCGGCGCAGCCGCTGTCATGCGCG
GCCCTATGGTGATTCAGCTTATAAATCAGCTGCTGACGCTTACCAGCTGG
GGTGAGCTTGATTACCTGGTCATAGACATGCCACCAGGTACTGGAGACAT
CCCTCTCACCCTCTGTCAATCTCTGAATATAACGGCCGCCGTCATCGTCA
CTACCCCGCAGCGGCTGAGTTTCACGGACGTGGTCAAAGGGGTGGATATG
TTTGATACAGTTAATGTGCCATGTGTCGCAGTGGTCGAGAACATGGCATA
TGCAGATGTATCAGCTCTTGATTACGTCGATAGTCGCGAAGATATGAACA
GAAACGGGGGCGTTGCGGGGGCGTGGCAACGCCTGCGACAAGATATAGAG
GACGTCCTAGAGGATGAGGATGGAATTAGGACCGGTAAAGGTGCCGTAGT
GGACGATCTCATAACCGTGGTACAACGACGGCTGCGGGAAGACAGGATCG
CAAGACCCTTGTTCGGACAGGGCCATAGGCAGCGGCTGGCAGACATGTGG
GGCTTGGATAACACGGTTTCCCTACCAGTGCTTGAGGAAGTGAGTAAATC
TGGGGATTCGGGCACTCCTCTGCTTGTAAGTGAACCTGACTCATCGTCCG
CCCAGATCTTCATGGACTTGGCCGGGCGTGTAGTTCGCGAAGTTGCAAAG
CTCCGCTACGATCGCTCCCGCCTCCGCCCATCTGTGACCTATCTTCCTGT
GGAGCATGTGATTGCAGTGACACTGCATGGTGCCGCAGGCCTCACAGATG
ATGGACGTATGGAAAGCGATATATCCCCCCCGCAAAAAATAGCACCAGCT
GCCCTGAGGCGCCAGTGTAGGTGCGCAATGTGCGTAGAAGAAATGACTGG
TCGACAACTGTTACAACCTGAGACAATTGCAGAGGATATCAAACCTGTCG
AAATCGGTGCCGTGGGCAATTATGCGATTGGAATCACATGGACAGACGGG
CACAAGTCACTGTTTCCCTATCGGAGCTTTGTGGACGGATATGACACGAG
GTCAGATCGGAAAGCAAGCGAAGAGATAGGATTTTGAACGTTGTCGTCCA
TGGAATGAAGGAAAAAAGCTCATTTGAAGAGATTAAATGATTTATTGTAA
CAAAGAATACAACAACAACAAAACACGTGGAATGAAGGAAAATTGCTCAT
TTGAAGCAACAAAGATAATCAAATCTAACAAAGAAAAGGCGGAAGATGTG
TGGAACACCC
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protein sequence of rna1954

>rna1954-protein ID=rna1954-protein|Name=rna1954|organism=Nannochloropsis gaditana|type=polypeptide|length=354bp
MMRWKHCYHLKFCVLLLNIVTQSKADYRMYSGRKALVKPTFRLPKMCSFC
PANLKVPNFRSLSPTRSCKERKYLARYERMCTVRGATPGTTAELPPLNMN
GLVAIFKPRNWTSNDVVQKVRSLLEKEARRRAGVKVKVKVGHGGTLDPMA
TGVLVLGVGRGCQDLNLYLKGSKAYRAVGLLGSEYDTMDATGTITETVDV
SHVTPDSLEEALVSFRGCIMQRPPVYSALRRKGKRLYELARQGEDVETEP
RAVQVDRLDLIHAEDETGHRLEWPYFGLAIECQGGTYVRSLISDVARSVN
ARAHMTALTRTKHGPLSLDDCLPEEVWKNDAEAVVQHLINLRDDMYAASS
DCPQ
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mRNA from alignment at CM002458.1:566218..567282-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1954 ID=rna1954|Name=rna1954|organism=Nannochloropsis gaditana|type=mRNA|length=1065bp|location=Sequence derived from alignment at CM002458.1:566218..567282- (Nannochloropsis gaditana)
ATGATGAGGTGGAAGCACTGCTATCATCTGAAATTTTGTGTACTACTTCT
GAACATCGTTACACAGAGCAAAGCTGACTACCGCATGTATTCTGGTCGAA
AAGCACTTGTCAAACCTACCTTCAGACTTCCGAAGATGTGTTCATTCTGC
CCGGCAAACTTGAAGGTTCCAAATTTTCGCAGTCTATCTCCGACTAGGAG
CTGTAAGGAGCGTAAATATTTGGCCAGATACGAGAGAATGTGCACAGTCC
GAGGCGCGACCCCCGGTACTACGGCGGAGCTTCCTCCTCTGAACATGAAT
GGTCTTGTTGCGATTTTTAAACCAAGGAATTGGACCAGTAATGATGTAGT
ACAAAAAGTTCGTAGTCTTCTAGAGAAAGAAGCTCGGCGTCGTGCTGGGG
TTAAAGTGAAAGTAAAAGTGGGTCACGGAGGGACTCTCGATCCCATGGCT
ACAGGAGTATTGGTTCTGGGTGTAGGTAGAGGCTGTCAAGATCTCAATTT
GTATCTGAAGGGATCCAAAGCATATCGAGCTGTCGGGCTGCTTGGTTCTG
AATACGACACGATGGATGCGACTGGTACGATAACCGAGACCGTCGACGTG
TCGCATGTGACACCAGACAGTCTCGAAGAAGCGTTGGTCTCCTTTCGAGG
TTGTATAATGCAGCGTCCACCAGTTTACTCTGCGCTCAGGAGGAAAGGAA
AACGACTGTACGAGCTGGCCCGTCAGGGAGAGGATGTGGAAACTGAACCA
CGGGCTGTGCAGGTTGATCGTCTCGACCTCATTCATGCAGAAGACGAAAC
AGGACATAGGTTGGAGTGGCCATACTTTGGCCTGGCGATTGAGTGTCAAG
GGGGAACGTACGTGCGATCCTTAATATCCGACGTAGCTCGGTCCGTTAAC
GCGCGGGCTCATATGACCGCCCTTACTCGCACGAAGCACGGACCTTTATC
TCTGGATGACTGCCTACCTGAGGAGGTATGGAAAAACGACGCTGAAGCTG
TTGTCCAGCATCTTATTAACCTAAGAGATGACATGTATGCAGCTTCAAGT
GATTGCCCGCAATAG
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Coding sequence (CDS) from alignment at CM002458.1:566218..567282-

>rna1954 ID=rna1954|Name=rna1954|organism=Nannochloropsis gaditana|type=CDS|length=1065bp|location=Sequence derived from alignment at CM002458.1:566218..567282- (Nannochloropsis gaditana)
ATGATGAGGTGGAAGCACTGCTATCATCTGAAATTTTGTGTACTACTTCT
GAACATCGTTACACAGAGCAAAGCTGACTACCGCATGTATTCTGGTCGAA
AAGCACTTGTCAAACCTACCTTCAGACTTCCGAAGATGTGTTCATTCTGC
CCGGCAAACTTGAAGGTTCCAAATTTTCGCAGTCTATCTCCGACTAGGAG
CTGTAAGGAGCGTAAATATTTGGCCAGATACGAGAGAATGTGCACAGTCC
GAGGCGCGACCCCCGGTACTACGGCGGAGCTTCCTCCTCTGAACATGAAT
GGTCTTGTTGCGATTTTTAAACCAAGGAATTGGACCAGTAATGATGTAGT
ACAAAAAGTTCGTAGTCTTCTAGAGAAAGAAGCTCGGCGTCGTGCTGGGG
TTAAAGTGAAAGTAAAAGTGGGTCACGGAGGGACTCTCGATCCCATGGCT
ACAGGAGTATTGGTTCTGGGTGTAGGTAGAGGCTGTCAAGATCTCAATTT
GTATCTGAAGGGATCCAAAGCATATCGAGCTGTCGGGCTGCTTGGTTCTG
AATACGACACGATGGATGCGACTGGTACGATAACCGAGACCGTCGACGTG
TCGCATGTGACACCAGACAGTCTCGAAGAAGCGTTGGTCTCCTTTCGAGG
TTGTATAATGCAGCGTCCACCAGTTTACTCTGCGCTCAGGAGGAAAGGAA
AACGACTGTACGAGCTGGCCCGTCAGGGAGAGGATGTGGAAACTGAACCA
CGGGCTGTGCAGGTTGATCGTCTCGACCTCATTCATGCAGAAGACGAAAC
AGGACATAGGTTGGAGTGGCCATACTTTGGCCTGGCGATTGAGTGTCAAG
GGGGAACGTACGTGCGATCCTTAATATCCGACGTAGCTCGGTCCGTTAAC
GCGCGGGCTCATATGACCGCCCTTACTCGCACGAAGCACGGACCTTTATC
TCTGGATGACTGCCTACCTGAGGAGGTATGGAAAAACGACGCTGAAGCTG
TTGTCCAGCATCTTATTAACCTAAGAGATGACATGTATGCAGCTTCAAGT
GATTGCCCGCAATAG
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Synonyms
Publications