rna1953, rna1953 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1953
Unique Name	rna1953
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1684
Alignment location	CM002458.1:563897..566156 +

Link to JBrowse

Properties


Property Name	Value
Product	protein of unknown function, DUF971
Orig transcript id	gnl\|cribi\|Naga_100002g64.4838.mrna
Orig protein id	gnl\|cribi\|Naga_100002g64.4838
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:563897..566156 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100002g64	gene1866	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1953	rna1953-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28719.1	cds1948	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:563897..566156+
coding sequence from alignment at CM002458.1:563897..566156+

mRNA sequence

>rna1953 ID=rna1953|Name=rna1953|organism=Nannochloropsis gaditana|type=mRNA|length=1684bp
TTTTCTAAAGAGCACGCGGCTATTACTCTTTCTTCATCATCGCATCAGGT
TTATTTTCGCAGAAGCATTTATCGCTTGCATTCTCTACGAACAACATCTT
GTCGATAAACAAATCGTCTTTTAATACCAAGATCGATGCGCCTTTTCCAC
GCTCCCGGTGATGGACCACTCGCATTTTAGCTCTACATAGTTCTGAGAGG
CAATTGAAAGATTGTTTGGCCCCAAATGTGGTGTTCAAGATTTCGTGGTT
ATTTTTACGGTTTATTGGTCCTCATCTCAATCGCACTTTTCAGCATGGAC
TCGAAGGCCATGATATCCGAAGTCGCCACGTCAACGATGAGGTGGAATGG
TTGCGTGGCGTTCGTAACTGCGCCACTCGTCAACAAAAATCCCCTTTCGC
TCCATTTAAGCCCTATCGGCTGGCCTTTAGAAACAAATTTTATTTGTTCG
ATCCGCAGAACCCGTCAACAGGTGGCATGCTTTGCATCCAGGGCGAGCAA
AAAGCGTCGGACTAGCGGTCGCATAAGAAAAGAGTCAGCCGATAACGAGA
GGAATGACGAGGGTGGGATACAGAGGGATCAACAGGATGCTCCTCGTGTG
AGCTCTCAGATTAACATTCCTGTCCGGAGACAAATTGCATTTGTGAAGCA
AATGAAAAAAATTGTGAAAGAGGAGGAGCGACCAAATACCGCTGTGACGA
AGAAGGCGCGCAAAAAGAAGGTCTTGGGCCAACGCGAGGCAATTGCCAGT
GATTACGCATCTTTTAAACCGTCTGTGTGCACCACTTATCTTCTCGTAGA
TGGTTACAACGTCATCAACAACTGGACCAAGATGATCAAGGCTCGGAGTG
TAGCAGGAATGCCGAGTGCAAGGCAAGCCCTTTTGGAGCAGTTGCGCTAC
ATACATCATTCCCGCCGATGGAAGGTGGTTGTGGCGTACGACGAGCACAC
ACCTGGCTCGGAGCTTCGTATCATGGAGGGCGATGTTGACGAGGTTTTTA
CAGGGGAGCGTGACTCAGCCGACTCTTACATAGAGCGGAGGGCAGTAGAG
CTGTGTAAGTCTGGAGACGTTCTTCGTGTGAAAGTCGCTACGGACGATCG
TACCATTCAGGTTGTATCCATGGCGTCGGGAGCGGAGACGATGAGTACGA
GTAGTCTCATCCGCGAGATATACCTGGCACGCAGGGAGCTTCTTTTCCAA
CGAGATGGAACAGATTGGCGAACAACGAAGTCCTTTGATGATGCCCAGGA
ATACTTTGTAGACTAGTCGGGAAGAGAGGGAAGCTGGCCTTACAAAGGCT
TGTGAAAGTTATGTTCTACTTCAGACGTGTCCACCGGCAGCCGAAGGCTC
GATCATCTAGGAAGGACTGGGAGCCGAGACGATTCGCTTCTTATGTAGTC
CTTTCGCACATTATAAATCTTGTGGCCTCGATCCTCTGCCAAGCTGAGGA
AGTCAGAGATCGGACAAGAGTTGTATTTCCTCTGAACTGGCATGGCCAGG
CGAAAGAAGGCGGGAAGGAAAGTGTGCTACGCAAATAGGCCATATACTAT
TGCTGTGTGAAGGCCGCATGTACTAACCAATGTGACATAGTGTGATTGTG
TTCTTGAGAAGAAGCGACGAAAGCAGAACGAATTTACTGAAAAGCCACTA
AGGGCACTTGTCCTCACCTAAAGAAGCGTACTCT

protein sequence of rna1953

>rna1953-protein ID=rna1953-protein|Name=rna1953|organism=Nannochloropsis gaditana|type=polypeptide|length=636bp
MTYRHYGHFRALFSIIFLGKYLSTSGFIQKHHVSIFGTSSSSNKPTSTPL
YRYAPSVSQLFIASTPFHEKLPIVSADRNLAETSSVITSSSEKNIAQVVT
QLRQVMDPDLGSDVVTLGFIKNLTIDGATGRVSFVLELTTPACPVKDDLK
AQAMQVVETLPWVTKADVILSARPITAEKSAGGDMKATGLSLVNNVIAVS
SCKGGVGKSTTAVNLAFALDRQGAKVGILDADIYGPSLPTMVAPDTEMVE
FVESQIRPMIRQTGLDAEGQPKGVKLMSFGYVNPGAAAVMRGPMVIQLIN
QLLTLTSWGELDYLVIDMPPGTGDIPLTLCQSLNITAAVIVTTPQRLSFT
DVVKGVDMFDTVNVPCVAVVENMAYADVSALDYVDSREDMNRNGGVAGAW
QRLRQDIEDVLEDEDGIRTGKGAVVDDLITVVQRRLREDRIARPLFGQGH
RQRLADMWGLDNTVSLPVLEEVSKSGDSGTPLLVSEPDSSSAQIFMDLAG
RVVREVAKLRYDRSRLRPSVTYLPVEHVIAVTLHGAAGLTDDGRMESDIS
PPQKIAPAALRRQCRCAMCVEEMTGRQLLQPETIAEDIKPVEIGAVGNYA
IGITWTDGHKSLFPYRSFVDGYDTRSDRKASEEIGF

mRNA from alignment at CM002458.1:563897..566156+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1953 ID=rna1953|Name=rna1953|organism=Nannochloropsis gaditana|type=mRNA|length=2260bp|location=Sequence derived from alignment at CM002458.1:563897..566156+ (Nannochloropsis gaditana)
ctcctgactACTGCTCTTCCTTACTCAATTTCACCATGTGCGAGCGTCAA
GATGAAACTGTACGAGACTGGCCTTTGATAAGCTTTGTTCACAGAAACCT
CATTGCGCTTCCTTCACACAGGGGCACTTTCACGTAAAACAGGAGCCTCG
TTGGGCCGTGGAGGGTGCTTTTTGTTATGACATACCGCCATTATGGCCAT
TTCAGAGCCTTATTTTCCATTATTTTTCTCGGGAAATATCTTTCAACCAG
TGGCTTTATACAAAAGCATCACGTGTCAATTTTTGGGACGTCGTCGTCGA
GCAACAAACCAACCAGCACTCCTCTGTATCGATACGCACCGTCCGTGAGT
CAACTTTTCATTGCCAGCACTCCATTCCATGAGAAACTTCCAATTGTGTC
CGCTGACCGAAACTTGGCCGAAACGTCATCTGTGATTACGTCAAGCAGTG
AGAAGAATATCGCACAAGTAGTCACTCAGCTCCGGCAAGTCATGGATCCT
GATTTGGGCTCTGATGTCGTCACTCTAGGCTTTATCAAGAACCTGACTAT
TGACGGAGCGACTGGCAGAGTCAGTTTTGTTCTAGAACTCACAACTCCCG
CATGCCCTGTAAAAGATGACCTCAAGGCACAGGCTATGCAAGTTGTCGAA
ACACTTCCTTGGGTTACGAAAGCTGATGTTATTCTGTCCGCACGGCCAAT
CACAGCGGAAAAAAGCGCTGGGGGAGATATGAAGGCCACTGGTTTGTCAC
TGGTGAATAATGTGATAGCTGTTTCCAGTTGCAAAGGAGGTGTGGGAAAA
TCTACCACCGCTGTCAATCTTGCATTTGCGTTGGACCGGCAGGGCGCCAA
GGTCGGCATTTTGGACGCTGACATCTATGGTCCAAGTCTCCCTACAATGG
TAGCACCCGATACAGAGATGGTGGAATTTGTGGAAAGTCAGATTCGACCG
ATGATCCGACAGACCGGATTGGATGCTGAGGGACAACCGAAAGGGGTGAA
ACTTATGAGTTTCGGATACGTAAATCCCGGCGCAGCCGCTGTCATGCGCG
GCCCTATGGTGATTCAGCTTATAAATCAGCTGCTGACGCTTACCAGCTGG
GGTGAGCTTGATTACCTGGTCATAGACATGCCACCAGGTACTGGAGAcat
ccctctcaccctctgTCAATCTCTGAATATAACGGCCGCCGTCATCGTCA
CTACCCCGCAGCGGCTGAGTTTCACGGACGTGGTCAAAGGGGTGGATATG
TTTGATACAGTTAATGTGCCATGTGTCGCAGTGGTCGAGAACATGGCATA
TGCAGATGTATCAGCTCTTGATTACGTCGATAGTCGCGAAGATATGAACA
GAAACGGGGGCGTTGCGGGGGCGTGGCAACGCCTGCGACAAGATATAGAG
GACGTCCtagaggatgaggatggaatTAGGACCGGTAAAGGTGCCGTAGT
GGACGATCTCATAACCGTGGTACAACGACGGCTGCGGGAAGACAGGATCG
CAAGACCCTTGTTCGGACAGGGCCATAGGCAGCGGCTGGCAGACATGTGG
GGCTTGGATAACACGGTTTCCCTACCAGTGCTTGAGGAAGTGAGTAAATC
TGGGGATTCGGGCACTCCTCTGCTTGTAAGTGAACCTGACTCATCGTCCG
CCCAGATCTTCATGGACTTGGCCGGGCGTGTAGTTCGCGAAGTTGCAAAG
CTCCGCTACGAtcgctcccgcctccgcccatcTGTGACCTATCTTCCTGT
GGAGCATGTGATTGCAGTGACACTGCATGGTGCCGCAGGCCTCACAGATG
ATGGACGTATGGAAAGCGATATATCCCCCCCGCAAAAAATAGCACCAGCT
GCCCTGAGGCGCCAGTGTAGGTGCGCAATGTGCGTAGAAGAAATGACTGG
TCGACAACTGTTACAACCTGAGACAATTGCAGAGGATATCAAACCTGTCG
AAATCGGTGCCGTGGGCAATTATGCGATTGGAATCACATGGACAGACGGG
CACAAGTCACTGTTTCCCTATCGGAGCTTTGTGGACGGATATGACACGAG
GTCAGATCGGAAAGCAAGCGAAGAGATAGGATTTTGAACGTTGTCGTCCA
TGgaatgaaggaaaaaagcTCATTTGAAGAGATTAAATGATTTATTGTAA
CAAAGAATACAACAACAACAAAACACGTGGAATGAAGGAAAATTGCTCAT
TTGAAGCAACAAAGATAATCAAATCTAACAAAGAAAAGGCGGAAGATGTG
TGGAACACCC

Coding sequence (CDS) from alignment at CM002458.1:563897..566156+

>rna1953 ID=rna1953|Name=rna1953|organism=Nannochloropsis gaditana|type=CDS|length=1911bp|location=Sequence derived from alignment at CM002458.1:563897..566156+ (Nannochloropsis gaditana)
ATGACATACCGCCATTATGGCCATTTCAGAGCCTTATTTTCCATTATTTT
TCTCGGGAAATATCTTTCAACCAGTGGCTTTATACAAAAGCATCACGTGT
CAATTTTTGGGACGTCGTCGTCGAGCAACAAACCAACCAGCACTCCTCTG
TATCGATACGCACCGTCCGTGAGTCAACTTTTCATTGCCAGCACTCCATT
CCATGAGAAACTTCCAATTGTGTCCGCTGACCGAAACTTGGCCGAAACGT
CATCTGTGATTACGTCAAGCAGTGAGAAGAATATCGCACAAGTAGTCACT
CAGCTCCGGCAAGTCATGGATCCTGATTTGGGCTCTGATGTCGTCACTCT
AGGCTTTATCAAGAACCTGACTATTGACGGAGCGACTGGCAGAGTCAGTT
TTGTTCTAGAACTCACAACTCCCGCATGCCCTGTAAAAGATGACCTCAAG
GCACAGGCTATGCAAGTTGTCGAAACACTTCCTTGGGTTACGAAAGCTGA
TGTTATTCTGTCCGCACGGCCAATCACAGCGGAAAAAAGCGCTGGGGGAG
ATATGAAGGCCACTGGTTTGTCACTGGTGAATAATGTGATAGCTGTTTCC
AGTTGCAAAGGAGGTGTGGGAAAATCTACCACCGCTGTCAATCTTGCATT
TGCGTTGGACCGGCAGGGCGCCAAGGTCGGCATTTTGGACGCTGACATCT
ATGGTCCAAGTCTCCCTACAATGGTAGCACCCGATACAGAGATGGTGGAA
TTTGTGGAAAGTCAGATTCGACCGATGATCCGACAGACCGGATTGGATGC
TGAGGGACAACCGAAAGGGGTGAAACTTATGAGTTTCGGATACGTAAATC
CCGGCGCAGCCGCTGTCATGCGCGGCCCTATGGTGATTCAGCTTATAAAT
CAGCTGCTGACGCTTACCAGCTGGGGTGAGCTTGATTACCTGGTCATAGA
CATGCCACCAGGTACTGGAGAcatccctctcaccctctgTCAATCTCTGA
ATATAACGGCCGCCGTCATCGTCACTACCCCGCAGCGGCTGAGTTTCACG
GACGTGGTCAAAGGGGTGGATATGTTTGATACAGTTAATGTGCCATGTGT
CGCAGTGGTCGAGAACATGGCATATGCAGATGTATCAGCTCTTGATTACG
TCGATAGTCGCGAAGATATGAACAGAAACGGGGGCGTTGCGGGGGCGTGG
CAACGCCTGCGACAAGATATAGAGGACGTCCtagaggatgaggatggaat
TAGGACCGGTAAAGGTGCCGTAGTGGACGATCTCATAACCGTGGTACAAC
GACGGCTGCGGGAAGACAGGATCGCAAGACCCTTGTTCGGACAGGGCCAT
AGGCAGCGGCTGGCAGACATGTGGGGCTTGGATAACACGGTTTCCCTACC
AGTGCTTGAGGAAGTGAGTAAATCTGGGGATTCGGGCACTCCTCTGCTTG
TAAGTGAACCTGACTCATCGTCCGCCCAGATCTTCATGGACTTGGCCGGG
CGTGTAGTTCGCGAAGTTGCAAAGCTCCGCTACGAtcgctcccgcctccg
cccatcTGTGACCTATCTTCCTGTGGAGCATGTGATTGCAGTGACACTGC
ATGGTGCCGCAGGCCTCACAGATGATGGACGTATGGAAAGCGATATATCC
CCCCCGCAAAAAATAGCACCAGCTGCCCTGAGGCGCCAGTGTAGGTGCGC
AATGTGCGTAGAAGAAATGACTGGTCGACAACTGTTACAACCTGAGACAA
TTGCAGAGGATATCAAACCTGTCGAAATCGGTGCCGTGGGCAATTATGCG
ATTGGAATCACATGGACAGACGGGCACAAGTCACTGTTTCCCTATCGGAG
CTTTGTGGACGGATATGACACGAGGTCAGATCGGAAAGCAAGCGAAGAGA
TAGGATTTTGA

Synonyms

Publications