rna1952, rna1952 (mRNA) Nannochloropsis gaditana

Overview
Namerna1952
Unique Namerna1952
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length231
Alignment locationCM002458.1:561893..563786 -

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Properties
Property NameValue
Productpin domain containing protein
Orig transcript idgnl|cribi|Naga_100002g65.4930.mrna
Orig protein idgnl|cribi|Naga_100002g65.4930
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:561893..563786 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100002g65gene1865Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1952rna1952-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28811.1cds1947Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1952 ID=rna1952|Name=rna1952|organism=Nannochloropsis gaditana|type=mRNA|length=231bp
ATGTGTTTCACCATTTCCTTTTTCCTCCCTTCATCCCATTCAAAGCATCT
GGTTTTGCATCATTTTAAAGCTATACATACTATGGGAAGACTTTGGATGG
TACAGGATAAAGCATGCCTCAGCTCGGAGATCCTGTTGTATCTCCATTTA
CATCACCTCAATCGAACGTTGTGGTCCTTTGTTCCGTGTCATGTTGTAGG
TGATGAAGGTGCCAGCATAACATTCTATTGA
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protein sequence of rna1952

>rna1952-protein ID=rna1952-protein|Name=rna1952|organism=Nannochloropsis gaditana|type=polypeptide|length=346bp
MWCSRFRGYFYGLLVLISIALFSMDSKAMISEVATSTMRWNGCVAFVTAP
LVNKNPLSLHLSPIGWPLETNFICSIRRTRQQVACFASRASKKRRTSGRI
RKESADNERNDEGGIQRDQQDAPRVSSQINIPVRRQIAFVKQMKKIVKEE
ERPNTAVTKKARKKKVLGQREAIASDYASFKPSVCTTYLLVDGYNVINNW
TKMIKARSVAGMPSARQALLEQLRYIHHSRRWKVVVAYDEHTPGSELRIM
EGDVDEVFTGERDSADSYIERRAVELCKSGDVLRVKVATDDRTIQVVSMA
SGAETMSTSSLIREIYLARRELLFQRDGTDWRTTKSFDDAQEYFVD
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mRNA from alignment at CM002458.1:561893..563786-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1952 ID=rna1952|Name=rna1952|organism=Nannochloropsis gaditana|type=mRNA|length=1894bp|location=Sequence derived from alignment at CM002458.1:561893..563786- (Nannochloropsis gaditana)
TTTTCTAAAGAGCACGCGGCTATTACTCTTTCTTCATCATCGCATCAGGT
TTATTTTCGCAGAAGCATTTATCGCTTGCATTCTCTACGAACAACATCTT
GTCGATAAACAAATCGTCTTTTAATACCAAGATCGATGCGCCTTTTCCAC
GCTCCCGGTGATGGACCACTCGCATTTTAGCTCTACATAGTTCTGAGAGG
CAATTGAAAGATTGTTTGGCCCCAAATGTGGTGTTCAAGATTTCGTGGTT
ATTTTTACGGTTTATTGGTCCTCATCTCAATCGCACTTTTCAGCATGGAC
TCGAAGGCCATGATATCCGAAGTCGCCACGTCAACGATGAGGTGGAATGG
TTGCGTGGCGTTCGTAACTGCGCCACTCGTCAACAAAAATCCCCTTTCGC
TCCATTTAAGCCCTATCGGCTGGCCTTTAGAAACAAATTTTATTTGTTCG
ATCCGCAGAACCCGTCAACAGGTGGCATGCTTTGCATCCAGGGCGAGCAA
AAAGCGTCGGACTAGCGGTCGCATAAGAAAAGAGTCAGCCGATAACGAGA
GGAATGACGAGGGTGGGATACAGAGGGATCAACAGGATGCTCCTCGTGTG
AGCTCTCAGATTAACATTCCTGTCCGGAGACAAATTGCATTTGTGAAGCA
AATGAAAAAAATTGTGAAAGAGGAGGAGCGACCAAATACCGCTGTGACGA
AGAAGGCGCGCAAAAAGAAGGTCTTGGGCCAACGCGAGGCAATTGCCAGT
GATTACGCATCTTTTAAACCGTCTGTGTGCACCACTTATCTTCTCGTAGA
TGGTTACAACGTCATCAAGTAAGTTTCTCTGTAAGGCTACGCTGGTCGTC
TTCGTTTCAGTTTCGACCTAATCAAAGCGCTTGTGCATTAAAATGTGCTG
ACATAATGAAGTGATGGTCCTTCACATTGCTGAGGATATGAAGGGCTTGT
GCTGAGTGTTCTGACCGGCTGCTCTCCCTCTGACGTGACACTCTGTAATT
CTCTTTCTCCATTTGATCCCCTGGCCAGCAACTGGACCAAGATGATCAAG
GCTCGGAGTGTAGCAGGAATGCCGAGTGCAAGGCAAGCCCTTTTGGAGCA
GTTGCGCTACATACATCATTCCCGCCGATGGAAGGTGGTTGTGGCGTACG
ACGAGCACACACCTGGCTCGGAGCTTCGTATCATGGAGGGCGATGTTGAC
GAGGTTTTTACAGGGGAGCGTGACTCAGCCGACTCTTACATAGAGCGGAG
GGCAGTAGAGCTGTGTAAGTCTGGAGACGTTCTTCGTGTGAAAGTCGCTA
CGGACGATCGTACCATTCAGGTTGTATCCATGGCGTCGGGAGCGGAGACG
ATGAGTACGAGTAGTCTCATCCGCGAGATATACCTGGCACGCAGGGAGCT
TCTTTTCCAACGAGATGGAACAGATTGGCGAACAACGAAGTCCTTTGATG
ATGCCCAGGAATACTTTGTAGACTAGTCGGGAAGAGAGGGAAGCTGGCCT
TACAAAGGCTTGTGAAAGTTATGTTCTACTTCAGACGTGTCCACCGGCAG
CCGAAGGCTCGATCATCTAGGAAGGACTGGGAGCCGAGACGATTCGCTTC
TTATGTAGTCCTTTCGCACATTATAAATCTTGTGGCCTCGATCCTCTGCC
AAGCTGAGGAAGTCAGAGATCGGACAAGAGTTGTATTTCCTCTGAACTGG
CATGGCCAGGCGAAAGAAGGCGGGAAGGAAAGTGTGCTACGCAAATAGGC
CATATACTATTGCTGTGTGAAGGCCGCATGTACTAACCAATGTGACATAG
TGTGATTGTGTTCTTGAGAAGAAGCGACGAAAGCAGAACGAATTTACTGA
AAAGCCACTAAGGGCACTTGTCCTCACCTAAAGAAGCGTACTCT
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Coding sequence (CDS) from alignment at CM002458.1:561893..563786-

>rna1952 ID=rna1952|Name=rna1952|organism=Nannochloropsis gaditana|type=CDS|length=2082bp|location=Sequence derived from alignment at CM002458.1:561893..563786- (Nannochloropsis gaditana)
CAACTGGACCAAGATGATCAAGGCTCGGAGTGTAGCAGGAATGCCGAGTG
CAAGGCAAGCCCTTTTGGAGCAGTTGCGCTACATACATCATTCCCGCCGA
TGGAAGGTGGTTGTGGCGTACGACGAGCACACACCTGGCTCGGAGCTTCG
TATCATGGAGGGCGATGTTGACGAGGTTTTTACAGGGGAGCGTGACTCAG
CCGACTCTTACATAGAGCGGAGGGCAGTAGAGCTGTGTAAGTCTGGAGAC
GTTCTTCGTGTGAAAGTCGCTACGGACGATCGTACCATTCAGGTTGTATC
CATGGCGTCGGGAGCGGAGACGATGAGTACGAGTAGTCTCATCCGCGAGA
TATACCTGGCACGCAGGGAGCTTCTTTTCCAACGAGATGGAACAGATTGG
CGAACAACGAAGTCCTTTGATGATGCCCAGGAATACTTTGTAGACTAGAT
GTGGTGTTCAAGATTTCGTGGTTATTTTTACGGTTTATTGGTCCTCATCT
CAATCGCACTTTTCAGCATGGACTCGAAGGCCATGATATCCGAAGTCGCC
ACGTCAACGATGAGGTGGAATGGTTGCGTGGCGTTCGTAACTGCGCCACT
CGTCAACAAAAATCCCCTTTCGCTCCATTTAAGCCCTATCGGCTGGCCTT
TAGAAACAAATTTTATTTGTTCGATCCGCAGAACCCGTCAACAGGTGGCA
TGCTTTGCATCCAGGGCGAGCAAAAAGCGTCGGACTAGCGGTCGCATAAG
AAAAGAGTCAGCCGATAACGAGAGGAATGACGAGGGTGGGATACAGAGGG
ATCAACAGGATGCTCCTCGTGTGAGCTCTCAGATTAACATTCCTGTCCGG
AGACAAATTGCATTTGTGAAGCAAATGAAAAAAATTGTGAAAGAGGAGGA
GCGACCAAATACCGCTGTGACGAAGAAGGCGCGCAAAAAGAAGGTCTTGG
GCCAACGCGAGGCAATTGCCAGTGATTACGCATCTTTTAAACCGTCTGTG
TGCACCACTTATCTTCTCGTAGATGGTTACAACGTCATCAACAACTGGAC
CAAGATGATCAAGGCTCGGAGTGTAGCAGGAATGCCGAGTGCAAGGCAAG
CCCTTTTGGAGCAGTTGCGCTACATACATCATTCCCGCCGATGGAAGGTG
GTTGTGGCGTACGACGAGCACACACCTGGCTCGGAGCTTCGTATCATGGA
GGGCGATGTTGACGAGGTTTTTACAGGGGAGCGTGACTCAGCCGACTCTT
ACATAGAGCGGAGGGCAGTAGAGCTGTGTAAGTCTGGAGACGTTCTTCGT
GTGAAAGTCGCTACGGACGATCGTACCATTCAGGTTGTATCCATGGCGTC
GGGAGCGGAGACGATGAGTACGAGTAGTCTCATCCGCGAGATATACCTGG
CACGCAGGGAGCTTCTTTTCCAACGAGATGGAACAGATTGGCGAACAACG
AAGTCCTTTGATGATGCCCAGGAATACTTTGTAGACTAGATGTGGTGTTC
AAGATTTCGTGGTTATTTTTACGGTTTATTGGTCCTCATCTCAATCGCAC
TTTTCAGCATGGACTCGAAGGCCATGATATCCGAAGTCGCCACGTCAACG
ATGAGGTGGAATGGTTGCGTGGCGTTCGTAACTGCGCCACTCGTCAACAA
AAATCCCCTTTCGCTCCATTTAAGCCCTATCGGCTGGCCTTTAGAAACAA
ATTTTATTTGTTCGATCCGCAGAACCCGTCAACAGGTGGCATGCTTTGCA
TCCAGGGCGAGCAAAAAGCGTCGGACTAGCGGTCGCATAAGAAAAGAGTC
AGCCGATAACGAGAGGAATGACGAGGGTGGGATACAGAGGGATCAACAGG
ATGCTCCTCGTGTGAGCTCTCAGATTAACATTCCTGTCCGGAGACAAATT
GCATTTGTGAAGCAAATGAAAAAAATTGTGAAAGAGGAGGAGCGACCAAA
TACCGCTGTGACGAAGAAGGCGCGCAAAAAGAAGGTCTTGGGCCAACGCG
AGGCAATTGCCAGTGATTACGCATCTTTTAAACCGTCTGTGTGCACCACT
TATCTTCTCGTAGATGGTTACAACGTCATCAA
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Synonyms
Publications