EWM28811.1, cds1947 (CDS) Nannochloropsis gaditana

Overview
NameEWM28811.1
Unique Namecds1947
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:562969..563561 -
Alignment locationCM002458.1:562311..562758 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28811.1
Productpin domain containing protein
Orig transcript idgnl|cribi|Naga_100002g65.4930.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:562969..563561 -
CM002458.1supercontigCM002458.1:562311..562758 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR010298DUF901
Homology
BLAST of EWM28811.1 vs. NCBI_GenBank
Match: gi|585111234|gb|EWM28811.1| (pin domain containing protein [Nannochloropsis gaditana])

HSP 1 Score: 719.153 bits (1855), Expect = 0.000e+0
Identity = 346/346 (100.00%), Postives = 346/346 (100.00%), Query Frame = 0
Query:    1 MWCSRFRGYFYGLLVLISIALFSMDSKAMISEVATSTMRWNGCVAFVTAPLVNKNPLSLHLSPIGWPLETNFICSIRRTRQQVACFASRASKKRRTSGRIRKESADNERNDEGGIQRDQQDAPRVSSQINIPVRRQIAFVKQMKKIVKEEERPNTAVTKKARKKKVLGQREAIASDYASFKPSVCTTYLLVDGYNVINNWTKMIKARSVAGMPSARQALLEQLRYIHHSRRWKVVVAYDEHTPGSELRIMEGDVDEVFTGERDSADSYIERRAVELCKSGDVLRVKVATDDRTIQVVSMASGAETMSTSSLIREIYLARRELLFQRDGTDWRTTKSFDDAQEYFVD 346
            MWCSRFRGYFYGLLVLISIALFSMDSKAMISEVATSTMRWNGCVAFVTAPLVNKNPLSLHLSPIGWPLETNFICSIRRTRQQVACFASRASKKRRTSGRIRKESADNERNDEGGIQRDQQDAPRVSSQINIPVRRQIAFVKQMKKIVKEEERPNTAVTKKARKKKVLGQREAIASDYASFKPSVCTTYLLVDGYNVINNWTKMIKARSVAGMPSARQALLEQLRYIHHSRRWKVVVAYDEHTPGSELRIMEGDVDEVFTGERDSADSYIERRAVELCKSGDVLRVKVATDDRTIQVVSMASGAETMSTSSLIREIYLARRELLFQRDGTDWRTTKSFDDAQEYFVD
Sbjct:    1 MWCSRFRGYFYGLLVLISIALFSMDSKAMISEVATSTMRWNGCVAFVTAPLVNKNPLSLHLSPIGWPLETNFICSIRRTRQQVACFASRASKKRRTSGRIRKESADNERNDEGGIQRDQQDAPRVSSQINIPVRRQIAFVKQMKKIVKEEERPNTAVTKKARKKKVLGQREAIASDYASFKPSVCTTYLLVDGYNVINNWTKMIKARSVAGMPSARQALLEQLRYIHHSRRWKVVVAYDEHTPGSELRIMEGDVDEVFTGERDSADSYIERRAVELCKSGDVLRVKVATDDRTIQVVSMASGAETMSTSSLIREIYLARRELLFQRDGTDWRTTKSFDDAQEYFVD 346          
BLAST of EWM28811.1 vs. NCBI_GenBank
Match: gi|752572511|ref|WP_041243740.1| (hypothetical protein [Gloeobacter kilaueensis])

HSP 1 Score: 88.5817 bits (218), Expect = 2.317e-17
Identity = 50/142 (35.21%), Postives = 80/142 (56.34%), Query Frame = 0
Query:  183 SVCTTYLLVDGYNVINNWTKMIKARSVAGMPSARQALLEQLRYIHHSRRWKVVVAYDEHTPGSEL--RIMEGDVDEVFTGERDSADSYIERRAVELCKSGDVLRVKVATDDRTIQVVSMASGAETMSTSSLIREIYLARREL 322
            +   T LLVDGYNV+ +W K+++ R    + +AR AL+EQL      R +  V+ +D     S L  ++    ++  FT    +ADS+IE+ + EL + G   RV VAT DR  Q++ +A GA  +S   L++E+  AR ++
Sbjct:    3 TAVQTILLVDGYNVVGSWPKLVRLRDSVSLEAARNALIEQLADFASFRGYYTVLVFDSQLVLSPLARKVETASLEICFTDYEQTADSFIEKFSYELLREGR--RVMVATSDRAQQLLILAQGAGWLSAQQLLKEVKAARHQM 142          
BLAST of EWM28811.1 vs. NCBI_GenBank
Match: gi|553881856|gb|AGY57298.1| (hypothetical protein GKIL_1052 [Gloeobacter kilaueensis JS1])

HSP 1 Score: 88.1965 bits (217), Expect = 2.354e-17
Identity = 50/138 (36.23%), Postives = 79/138 (57.25%), Query Frame = 0
Query:  187 TYLLVDGYNVINNWTKMIKARSVAGMPSARQALLEQLRYIHHSRRWKVVVAYDEHTPGSEL--RIMEGDVDEVFTGERDSADSYIERRAVELCKSGDVLRVKVATDDRTIQVVSMASGAETMSTSSLIREIYLARREL 322
            T LLVDGYNV+ +W K+++ R    + +AR AL+EQL      R +  V+ +D     S L  ++    ++  FT    +ADS+IE+ + EL + G   RV VAT DR  Q++ +A GA  +S   L++E+  AR ++
Sbjct:    3 TILLVDGYNVVGSWPKLVRLRDSVSLEAARNALIEQLADFASFRGYYTVLVFDSQLVLSPLARKVETASLEICFTDYEQTADSFIEKFSYELLREGR--RVMVATSDRAQQLLILAQGAGWLSAQQLLKEVKAARHQM 138          
BLAST of EWM28811.1 vs. NCBI_GenBank
Match: gi|971509623|dbj|GAQ88575.1| (hypothetical protein KFL_004410030 [Klebsormidium nitens])

HSP 1 Score: 91.2781 bits (225), Expect = 2.025e-16
Identity = 89/273 (32.60%), Postives = 125/273 (45.79%), Query Frame = 0
Query:   71 NFICSIRRTRQQVACFASRASKKRRTSGRIRKESADNERNDEGGIQRDQQDAPRVSSQINIPVRRQIAFVKQMKKIVKEEERPNTAVTKKARKKKVLGQREAIASDYAS---FKPSVC-------------TTYLLVDGYNVINNWTKMIKARSVAGMPSARQALLEQLRYIHHSRRWKVVVAYDEHTPGSELRIMEGD--VDEVFTGERDSADSYIERRAVELCKSGDVLRVKVATDDRTIQVVSMASGAETMSTSSLIREIYLARRELLFQ 325
            +F  S RR R ++ C A + +K     G   K   D            Q   PRVS+ INIPVR Q+ +VK +K+  K    P        R+KK   +R + +S  AS     PS                  LLVDGYN+   W K+ K  S   + +AR  L+ +L+     +  KVVV +D    G +    EGD  +  V++ + D+ADS+IER A  L   G+   V V T D   Q ++   GA   S   LI+EI  AR+E+L Q
Sbjct:  120 SFHSSCRRRRGRITCGAKKGAKGGGDEGP--KSDTDGR----------QSTPPRVSTNINIPVRYQLRYVKALKEYQKNASGPPVRQATGYRRKK---ERPSESSGVASGDVVAPSTSLMGQGVMEELNLEPPVLLVDGYNMCGYWPKLKKHFSKGDLEAARAKLIVELQTYGACKGIKVVVVFDAQKSGLQSH-SEGDKYLKVVYSAD-DTADSWIEREAKNLHDKGN-HNVWVVTSDLAQQSMAYGVGATVWSCGLLIQEINQARKEMLKQ 374          
BLAST of EWM28811.1 vs. NCBI_GenBank
Match: gi|499455522|ref|WP_011142986.1| (hypothetical protein [Gloeobacter violaceus] >gi|37522562|ref|NP_925939.1| hypothetical protein glr2993 [Gloeobacter violaceus PCC 7421] >gi|35213563|dbj|BAC90934.1| glr2993 [Gloeobacter violaceus PCC 7421])

HSP 1 Score: 85.5001 bits (210), Expect = 2.934e-16
Identity = 53/138 (38.41%), Postives = 79/138 (57.25%), Query Frame = 0
Query:  187 TYLLVDGYNVINNWTKMIKARSVAGMPSARQALLEQLRYIHHSRRWKVVVAYDEHTPGSEL-RIMEGDVDEV-FTGERDSADSYIERRAVELCKSGDVLRVKVATDDRTIQVVSMASGAETMSTSSLIREIYLARREL 322
            T LLVDGYNV+  W ++ + R    + +AR  L+EQL      R ++ V+ +D     S L R  E    EV FT    +ADS+IE+ + +L +     RV VAT DR  QV+ +A GA+ +S+  L++E+  ARR+L
Sbjct:    3 TILLVDGYNVVGAWPRLARLRDRHSLEAARNELVEQLAGYASFRGYRAVLVFDAQLVTSPLVRASETPHLEVCFTDYEQTADSFIEQYSYQLLRENRRRRVMVATSDRAQQVLVLAQGADWLSSEQLLKEVEAARRQL 140          
BLAST of EWM28811.1 vs. NCBI_GenBank
Match: gi|737400538|ref|WP_035381815.1| (RNA-binding protein [Fervidicella metallireducens] >gi|599128306|gb|EYE87222.1| tetracycline resistance protein [Fervidicella metallireducens AeB])

HSP 1 Score: 83.5741 bits (205), Expect = 1.396e-15
Identity = 50/134 (37.31%), Postives = 76/134 (56.72%), Query Frame = 0
Query:  186 TTYLLVDGYNVINNWTKMIKARSVAGMPSARQALLEQLRYIHHSRRWKVVVAYDEH-TPGSELR-IMEGDVDEVFTGERDSADSYIERRAVELCKSGDVLRVKVATDDRTIQVVSMASGAETMSTSSLIREIYL 317
            T YL VDGYN+IN+W K +K      +  AR  L++ LR     +  K++V +D H   GS ++ I +G++D VFT E+++AD YIER   EL +  +V    VAT D   Q + +  G   ++ + L+ EI L
Sbjct:    4 TKYLFVDGYNIINSW-KELKVLKDENLEDARDKLVDMLREFAAYKGIKIIVVFDAHMVKGSSVKHIKQGEIDVVFTKEQETADCYIERNVAELSRKNEVY---VATSDYLEQRIVLQMGGIRITPAELLNEISL 133          
BLAST of EWM28811.1 vs. NCBI_GenBank
Match: gi|298709820|emb|CBJ31618.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 80.8777 bits (198), Expect = 4.179e-14
Identity = 57/189 (30.16%), Postives = 92/189 (48.68%), Query Frame = 0
Query:  143 MKKIVKEEERPNTAVTKKARKKKVLGQREAIASDYAS--FKPSVCTTYLLVDGYNVINNWTKMIKARSVAGMPSARQALLEQLRYIHHSRRWKVVVAYDEHTPGSELR--IMEGDVDEVFTGERDSADSYIERRAVELCKSGDVLRVKVATDDRTIQVVSMASGAETMSTSSLIREIYLARRELLFQRD 327
            M+K ++    P   V  K R+ K     + +  +  S  + P +    L+VDGYN+I +W+K         +  AR+ L+E+L  +   R W V V +D +      R  +   ++D VFT   +SAD Y+ER   +L  SG    V VAT D+ +Q + + +GAE  S   +I EI ++  E +   D
Sbjct:    1 MRKSMERSNGPKKMVHNKYRRVKNTDYEDIVEPEDLSHIYMPDIAPA-LMVDGYNIIFHWSKCSIVADNGDLEGARRILVEELDTLAAMRGWTVTVVFDAYKRKGRARKYVTPNEIDVVFTSNGESADMYVERLTEQLKDSG-CPNVMVATGDKLMQSLVVGAGAEVFSPDRIIEEIEISHSEAVAYTD 187          
BLAST of EWM28811.1 vs. NCBI_GenBank
Match: gi|1180759913|ref|WP_084242204.1| (hypothetical protein [Planomicrobium okeanokoites])

HSP 1 Score: 78.9518 bits (193), Expect = 5.823e-14
Identity = 48/124 (38.71%), Postives = 71/124 (57.26%), Query Frame = 0
Query:  189 LLVDGYNVINNWTKMIKARSVAGMPSARQALLEQLRYIHHSRRWKVVVAYDEH-TPGSELRIMEGDVDEVFTGERDSADSYIERRAVELCKSGDVLRVKVATDDRTIQVVSMASGAETMSTSSL 311
            LLVDGYN+I +W ++ + +    + SAR  L+E++      + W+V++ +D H  PG E R +  DV+ +FT E ++AD  IE+ AV L    D  +V VAT D T Q V  A GA  +S   L
Sbjct:    4 LLVDGYNIIGDWVELRELKK-DKLASARDRLIERMAEYRGYKGWRVIIVFDAHLVPGIEARNLTSDVEVIFTKESETADERIEKLAVSLNNRRD--QVYVATSDSTEQWVIFAKGALRISAREL 124          
BLAST of EWM28811.1 vs. NCBI_GenBank
Match: gi|1054585934|ref|WP_066354623.1| (hypothetical protein [Fervidicola ferrireducens] >gi|996041005|gb|KXG75119.1| hypothetical protein AN618_20480 [Fervidicola ferrireducens])

HSP 1 Score: 77.7962 bits (190), Expect = 1.607e-13
Identity = 52/130 (40.00%), Postives = 74/130 (56.92%), Query Frame = 0
Query:  188 YLLVDGYNVINNWTKMIKARSVAGMPSARQALLEQLRYIHHSRRWKVVVAYDEH--TPGSELRIMEGDVDEVFTGERDSADSYIERRAVELCKSGDVLRVKVATDDRTIQVVSMASGAETMSTSSLIREI 315
            YL +DGYN+IN W ++I+A+SV+ + +AR  L++ +         K+VV +D H    G   R +   V+ VFT E ++AD+YIE R V+    GD  +VKVAT D   Q + M  GA  MS   L  EI
Sbjct:    8 YLFIDGYNIINAWPELIEAKSVS-LETARDKLVDIMSDYAAQTGTKIVVVFDAHHVEGGRGARYLINGVEVVFTKEGETADAYIE-RTVDSMGKGD--KVKVATSDWIEQQIVMGRGAVRMSARELRNEI 133          
BLAST of EWM28811.1 vs. NCBI_GenBank
Match: gi|1009147028|ref|XP_015891190.1| (PREDICTED: uncharacterized protein YacP [Ziziphus jujuba])

HSP 1 Score: 79.337 bits (194), Expect = 2.323e-13
Identity = 67/213 (31.46%), Postives = 101/213 (47.42%), Query Frame = 0
Query:  123 PRVSSQINIPVRRQIAFVKQMKKIVKEEERPNTAVTKKARKKKVLGQREAIASDYASFKPSVCTTY------------LLVDGYNVINNWTKMIKARSVAGMPSARQALLEQLRYIHHSRRWKVVVAYDEHTPGSELRIMEGD-VDEVFTGERDSADSYIERRAVELCKSGDVLRVKVATDDRTIQVVSMASGAETMSTSSLIREIYLARREL 322
            PR++S     V++ + F+K  K+  K +       T   RKK    ++E +  D   ++    T Y            LLVDGYNV   W K+ K  +   +  ARQ L+ +L      R  KVVV +D    G      E D VD V++GE   AD++IE+  V L + G   RV V T DR  Q  +  +GA   S+ +L+ EI  +++E+
Sbjct:   24 PRITSN----VKQNLQFLKLWKEFQKRKSSTPKPATSYRRKK---AEKEDLPEDTEIYRDPTTTLYYTNQGLDNAVPVLLVDGYNVCGYWVKLKKHFTNGRLDVARQKLINELVTFSMLREVKVVVVFDAMMSGLPTHKEEFDGVDIVYSGE-SCADAWIEKEVVALREDG-CPRVWVVTSDRIQQHAAHGAGAFVWSSKALVSEIKESKKEV 227          
The following BLAST results are available for this feature:
BLAST of EWM28811.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111234|gb|EWM28811.1|0.000e+0100.00pin domain containing protein [Nannochloropsis gad... [more]
gi|752572511|ref|WP_041243740.1|2.317e-1735.21hypothetical protein [Gloeobacter kilaueensis][more]
gi|553881856|gb|AGY57298.1|2.354e-1736.23hypothetical protein GKIL_1052 [Gloeobacter kilaue... [more]
gi|971509623|dbj|GAQ88575.1|2.025e-1632.60hypothetical protein KFL_004410030 [Klebsormidium ... [more]
gi|499455522|ref|WP_011142986.1|2.934e-1638.41hypothetical protein [Gloeobacter violaceus] >gi|3... [more]
gi|737400538|ref|WP_035381815.1|1.396e-1537.31RNA-binding protein [Fervidicella metallireducens]... [more]
gi|298709820|emb|CBJ31618.1|4.179e-1430.16conserved unknown protein [Ectocarpus siliculosus][more]
gi|1180759913|ref|WP_084242204.1|5.823e-1438.71hypothetical protein [Planomicrobium okeanokoites][more]
gi|1054585934|ref|WP_066354623.1|1.607e-1340.00hypothetical protein [Fervidicola ferrireducens] >... [more]
gi|1009147028|ref|XP_015891190.1|2.323e-1331.46PREDICTED: uncharacterized protein YacP [Ziziphus ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1952rna1952Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications