rna1950, rna1950 (mRNA) Nannochloropsis gaditana

Overview
Namerna1950
Unique Namerna1950
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length998
Alignment locationCM002458.1:559865..561165 -

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Properties
Property NameValue
Productrna binding protein
Orig transcript idgnl|cribi|Naga_100002g68.4821.mrna
Orig protein idgnl|cribi|Naga_100002g68.4821
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:559865..561165 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100002g68gene1863Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28702.1cds1945Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1950rna1950-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1950 ID=rna1950|Name=rna1950|organism=Nannochloropsis gaditana|type=mRNA|length=998bp
ATTGCCGTGAAACACATGTCGCAAAGTATGCAATGTATCATAATCCTAAC
CCGACAGACGAGCCAATGCCCATACACATTGCCGTGCTGTACCTCGCGAT
TGCGGGCCTCAATTAAAAGAACTTTGATGGATGAAGGCCATGACCACTCC
GTCATTTCCGTGATGGAACGCGAGTATCATCGCTCTGACAGAGAAAGGCG
AGCAAAGCAAGTGGAGCGAAGAGAAAGTCGTTGAAGGCGACTCATGGAAT
AGAATCATAAAATGTCCGCCTTTGCCTACATGCTCGCTTAGACTAGCGGC
GGACACGGGATGACACGGTGTCGATTCCCGCGGCGTACGCGACTGAAGAT
TACAAGCTTCTGGACTTCGAGTTAGAGATCATCACGACACACATAACCAT
CCAAGAAGGAAACTGAGTGAAGTCGGCTCTGCCCATTCTTGCACAGATCT
TTACGACTTTAAAACCCGACAAGACCAGGATGAAGACTCTTCTCCGTATC
TGGCTCATCAGCGTCGCCTTTCTGCGGGTCTTGTCCGTAATCTTGGGCTA
TTTCTATCCTGCGACCCTGGGCGAGAGCGTTTTTGGCCGGGCTTTGAGTC
AGGTCACCCCGCTTACAGCGCGAACATTTGGAACTTGGACACTTCTTTCG
TCTGTCGTGACCCTTATGTGCGCATTGAATATTGAGTCTGGGCCTTTGTA
CCGCACAACCATGGCTTCTTTCGTCATTGCCATCGTCTTCTTTTTCTTAG
AATTTGAAATGTACAGAACTGTAGACATGCGCTCAGCCATGACGCCGTTT
ATCATAGCGAGTAAGTTAAAATCCTGTGCCTCTTCTATCTTTGATTTCCC
CATTTGTGTACAAGAAAGTGCTTATTTATCTTTCACCTCTGGACTCAATA
CAACAGCAACATCGACCCTTGTGATGGCTATAGCCTATTCGTCGATCGTG
GTAGAAGACACAAAGAAAAGTAAATAAACAGACGGGTTGAAATTGTGC
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protein sequence of rna1950

>rna1950-protein ID=rna1950-protein|Name=rna1950|organism=Nannochloropsis gaditana|type=polypeptide|length=351bp
MAALVLQTLALATFLMPLEAFLCDYFPSPLRSQPRRQQDYQDAWHERNIQ
QRHVFSSLGQKSTASRQDTVKERLAQEWELDCYSRPVVGEDGKKLWELMV
CDSLGEFRAVETMPSNMVNSRELRKLVEKVIEDAPVKPRVIRFFRNAMFN
MVSLALKDLKVRVVPSRSTNALYSWIDEREREVYAKLPGYDPQMRDSNDV
FGLREPEVMPDGLMGDKYAFMCLPVSQFLDGEVNYENSGIGRLFQLDASL
PRDEQVQGLVIYSSRAKSIAAWLHSMELCFIKANFSKRIMVLEVGIDTQY
LMATLNDIRRVEAQIFEQGKEKLGGVHFLALQTDEESDGVEGFFLLRERK
R
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mRNA from alignment at CM002458.1:559865..561165-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1950 ID=rna1950|Name=rna1950|organism=Nannochloropsis gaditana|type=mRNA|length=1301bp|location=Sequence derived from alignment at CM002458.1:559865..561165- (Nannochloropsis gaditana)
ACTATCTTGCCATTGTACGTGCTCAAACTCCTACACATTTCTCTCCTCGC
ACAGTAAAGTAGTTCAGAGCTCGGAGAGCGACGCGCCCCATGGCTGCGCT
GGTGCTTCAGACTCTAGCCCTTGCAACTTTTCTGATGCCCCTTGAGGCCT
TCCTCTGCGACTATTTTCCCTCGCCGTTGCGGAGCCAGCCGCGGCGTCAA
CAAGACTACCAGGACGCTTGGCACGAGCGCAACATTCAACAGAGACATGT
ATTCTCAAGCCTTGGACAGAAATCGACGGCCTCACGGCAAGACACTGTGA
AGGAGCGGCTAGCACAGGAGTGGGAATTGGACTGCTATTCTCGGCCCGTG
GTCGGAGAAGACGGTAAAAAACTCTGGGAGCTGATGGTATGCGACTCACT
AGGGGAGTTTCGCGCTGTAGAAACTATGCCTAGCAACATGGTCAATAGTA
GGGAACTTCGTAAGCTCGTTGAAAAGGTGATTGAAGATGCCCCCGTTAAA
CCTCGGGTGATACGCTTTTTCCGCAATGCCATGTTCAACATGGTCAGCCT
TGCTCTCAAGGATCTTAAGGTCCGCGTTGTCCCCAGTCGCTCCACAAACG
CATTGTATAGCTGGATAGATGAGCGAGAGCGGGAAGTTTATGCCAAGTTG
CCTGGCTACGACCCCCAGATGCGAGACTCTAACGATGTCTTCGGTCTGCG
GGAGCCTGAGGTCATGCCCGACGGTCTTATGGGTGATAAGTACGCTTTTA
TGTGCCTGCCGGTTTCTCAGTTTTTGGACGGAGAAGTCAATTACGAGAAC
AGTGGTATCGGAAGGCTTTTCCAGCTCGACGCCTCCCTGCCTCGGGATGA
GCAAGTGCAAGGCCTCGTTATCTACAGCTCGCGCGCCAAATCCATCGCTG
CCTGGCTACACAGCATGGAGCTCTGTTTTATCAAAGCCAACTTTAGTAAG
CGCATCATGGTTTTAGAGGTAGGGATTGACACACAGTACCTCATGGCCAC
ACTTAACGACATCCGCCGCGTGGAGGCGCAGATCTTCGAGCAGGGCAAGG
AGAAGCTGGGAGGGGTCCATTTCCTGGCTTTGCAGACGGACGAGGAGAGT
GACGGTGTCGAAGGCTTCTTCTTGTTGCGCGAGCGGAAGCGATGATTGCG
ACAAAGTGGAGGTCATGAACTGAACCGTCGAAGCAGAAAAGAGGAAAACG
CTATTCGAGGATATGCGAGTACATTACAGGCCCTTGCGTCTTGCGTTAAC
GCATCGAGTACGACAAAAATAAGAACAGAAAAAAATGCTCACTGCAGCAC
A
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Coding sequence (CDS) from alignment at CM002458.1:559865..561165-

>rna1950 ID=rna1950|Name=rna1950|organism=Nannochloropsis gaditana|type=CDS|length=1056bp|location=Sequence derived from alignment at CM002458.1:559865..561165- (Nannochloropsis gaditana)
ATGGCTGCGCTGGTGCTTCAGACTCTAGCCCTTGCAACTTTTCTGATGCC
CCTTGAGGCCTTCCTCTGCGACTATTTTCCCTCGCCGTTGCGGAGCCAGC
CGCGGCGTCAACAAGACTACCAGGACGCTTGGCACGAGCGCAACATTCAA
CAGAGACATGTATTCTCAAGCCTTGGACAGAAATCGACGGCCTCACGGCA
AGACACTGTGAAGGAGCGGCTAGCACAGGAGTGGGAATTGGACTGCTATT
CTCGGCCCGTGGTCGGAGAAGACGGTAAAAAACTCTGGGAGCTGATGGTA
TGCGACTCACTAGGGGAGTTTCGCGCTGTAGAAACTATGCCTAGCAACAT
GGTCAATAGTAGGGAACTTCGTAAGCTCGTTGAAAAGGTGATTGAAGATG
CCCCCGTTAAACCTCGGGTGATACGCTTTTTCCGCAATGCCATGTTCAAC
ATGGTCAGCCTTGCTCTCAAGGATCTTAAGGTCCGCGTTGTCCCCAGTCG
CTCCACAAACGCATTGTATAGCTGGATAGATGAGCGAGAGCGGGAAGTTT
ATGCCAAGTTGCCTGGCTACGACCCCCAGATGCGAGACTCTAACGATGTC
TTCGGTCTGCGGGAGCCTGAGGTCATGCCCGACGGTCTTATGGGTGATAA
GTACGCTTTTATGTGCCTGCCGGTTTCTCAGTTTTTGGACGGAGAAGTCA
ATTACGAGAACAGTGGTATCGGAAGGCTTTTCCAGCTCGACGCCTCCCTG
CCTCGGGATGAGCAAGTGCAAGGCCTCGTTATCTACAGCTCGCGCGCCAA
ATCCATCGCTGCCTGGCTACACAGCATGGAGCTCTGTTTTATCAAAGCCA
ACTTTAGTAAGCGCATCATGGTTTTAGAGGTAGGGATTGACACACAGTAC
CTCATGGCCACACTTAACGACATCCGCCGCGTGGAGGCGCAGATCTTCGA
GCAGGGCAAGGAGAAGCTGGGAGGGGTCCATTTCCTGGCTTTGCAGACGG
ACGAGGAGAGTGACGGTGTCGAAGGCTTCTTCTTGTTGCGCGAGCGGAAG
CGATGA
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Synonyms
Publications