EWM28702.1, cds1945 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28702.1 vs. NCBI_GenBank
Match: gi|585111125|gb|EWM28702.1| (rna binding protein [Nannochloropsis gaditana]) HSP 1 Score: 726.472 bits (1874), Expect = 0.000e+0 Identity = 351/351 (100.00%), Postives = 351/351 (100.00%), Query Frame = 0
Query: 1 MAALVLQTLALATFLMPLEAFLCDYFPSPLRSQPRRQQDYQDAWHERNIQQRHVFSSLGQKSTASRQDTVKERLAQEWELDCYSRPVVGEDGKKLWELMVCDSLGEFRAVETMPSNMVNSRELRKLVEKVIEDAPVKPRVIRFFRNAMFNMVSLALKDLKVRVVPSRSTNALYSWIDEREREVYAKLPGYDPQMRDSNDVFGLREPEVMPDGLMGDKYAFMCLPVSQFLDGEVNYENSGIGRLFQLDASLPRDEQVQGLVIYSSRAKSIAAWLHSMELCFIKANFSKRIMVLEVGIDTQYLMATLNDIRRVEAQIFEQGKEKLGGVHFLALQTDEESDGVEGFFLLRERKR 351
MAALVLQTLALATFLMPLEAFLCDYFPSPLRSQPRRQQDYQDAWHERNIQQRHVFSSLGQKSTASRQDTVKERLAQEWELDCYSRPVVGEDGKKLWELMVCDSLGEFRAVETMPSNMVNSRELRKLVEKVIEDAPVKPRVIRFFRNAMFNMVSLALKDLKVRVVPSRSTNALYSWIDEREREVYAKLPGYDPQMRDSNDVFGLREPEVMPDGLMGDKYAFMCLPVSQFLDGEVNYENSGIGRLFQLDASLPRDEQVQGLVIYSSRAKSIAAWLHSMELCFIKANFSKRIMVLEVGIDTQYLMATLNDIRRVEAQIFEQGKEKLGGVHFLALQTDEESDGVEGFFLLRERKR
Sbjct: 1 MAALVLQTLALATFLMPLEAFLCDYFPSPLRSQPRRQQDYQDAWHERNIQQRHVFSSLGQKSTASRQDTVKERLAQEWELDCYSRPVVGEDGKKLWELMVCDSLGEFRAVETMPSNMVNSRELRKLVEKVIEDAPVKPRVIRFFRNAMFNMVSLALKDLKVRVVPSRSTNALYSWIDEREREVYAKLPGYDPQMRDSNDVFGLREPEVMPDGLMGDKYAFMCLPVSQFLDGEVNYENSGIGRLFQLDASLPRDEQVQGLVIYSSRAKSIAAWLHSMELCFIKANFSKRIMVLEVGIDTQYLMATLNDIRRVEAQIFEQGKEKLGGVHFLALQTDEESDGVEGFFLLRERKR 351
BLAST of EWM28702.1 vs. NCBI_GenBank
Match: gi|298714858|emb|CBJ25757.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 318.931 bits (816), Expect = 9.279e-105 Identity = 149/289 (51.56%), Postives = 208/289 (71.97%), Query Frame = 0
Query: 64 ASRQDTVKE--RLAQEWELDCYSRPVVGEDGKKLWELMVCDSLGEFRAVETMPSNMVNSRELRKLVEKVIEDAP--VKPRVIRFFRNAMFNMVSLALKDLKVRVVPSRSTNALYSWIDEREREVYAKLPGYDPQMRDSNDVFGLREPEVMPDGLMGDKYAFMCLPVSQFLDGEVNYENSGIGRLFQLDASLPRDEQVQGLVIYSSRAKSIAAWLHSMELCFIKANFSKRIMVLEVGIDTQYLMATLNDIRRVEAQIFEQGKEKLGGVHFLALQTDEESDGVEGFFLLRE 348
A + T+K +++ EWELD YSRPVVG DGKKLWEL++CDS G FR V +PSNMVNSRE+R+ +E VIE AP KP VIRFFRNAMFNM+ +ALK+++V V P R+T A+Y W++ERER+VY + G+ P M+ F +R P +PD L G++YAF+ +PVS+F G +N EN G+GRL LDASLP D + GL ++++RA+ +A W+ +E+ + KA+ R + LE GI+TQYL+A + +R EAQ FE+ K LGG HF+A+Q++ ++D V GF+LL+E
Sbjct: 20 AGAETTIKPGAKISNEWELDVYSRPVVGADGKKLWELLICDSTGNFRHVSPIPSNMVNSREVRRTIEGVIEAAPGGSKPTVIRFFRNAMFNMIDIALKEVEVAVKPCRTTYAMYQWLEERERDVYPAMAGFKPTMKQPA-FFDIRTPTPLPDALRGEQYAFVTMPVSEFRQGNINDENVGVGRLCPLDASLPDDAMIPGLAMFTARAEPLATWMTGLEVAYFKADLKNRELALECGINTQYLVARVQGDQRKEAQGFEEAKRALGGFHFVAVQSNPDADDVAGFWLLKE 307
BLAST of EWM28702.1 vs. NCBI_GenBank
Match: gi|224002018|ref|XP_002290681.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220974103|gb|EED92433.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 277.715 bits (709), Expect = 7.671e-88 Identity = 135/287 (47.04%), Postives = 200/287 (69.69%), Query Frame = 0
Query: 67 QDTVKERLAQEWELDCYSRPVVGEDGKKLWELMVCDSLGEFRAVETMPSNMVNSRELRKLVEKVIEDAPVKPRVIRFFRNAMFNMVSLALKDLKVRVVPSRSTNALYSWIDEREREVYAKLPGYDPQMRDSNDVFG----LREPEVMPDGLMGDKYAFMCLPVSQFL-DGEVNYENSGIGRLFQLDASLPRDEQVQGLVIYSSRAKSIAAWLHSMELCFIKANFSKRIMVLEVGIDTQYLMATLNDIRRVEAQIFEQGKEKLGGVHFLALQTDEESDGVEGFFLLRE 348
+ T +++++EWELDCYSRPV+ + KKLWE+++ DS G + +PSN VNSRE+R++VE++I+++ VKP IRFFR AMFNM+++AL ++ V PSR T AL WI++R R+VY K+ GY M + G +R +PD L G+KYAF+ LP+++FL G ++ N G+GRL +D++L D VQG+VI + RAK++A+WL E+ +KA+ KR +V+E ID QYLMA LND +R EA ++E+GK+ L G+HF+++Q DE+ D GF+LLRE
Sbjct: 69 ETTNWDKVSEEWELDCYSRPVLVDGKKKLWEILMTDSSGNMKVCRALPSNKVNSREVRRVVEEIIDESEVKPSTIRFFRGAMFNMINIALSEIDVIAKPSRCTFALAQWIEDRNRDVYPKMEGYRATMSGIGGIGGTFLDIRTAVKLPDALRGEKYAFVGLPLAEFLPGGGIDNNNIGVGRLCPVDSTLAADSFVQGVVILTPRAKALASWLAGTEVAGLKADLRKRELVMETDIDNQYLMAKLNDDQRREAAVYEEGKDALNGLHFISVQKDEDDDPA-GFWLLRE 354
BLAST of EWM28702.1 vs. NCBI_GenBank
Match: gi|219117107|ref|XP_002179348.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217409239|gb|EEC49171.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 271.552 bits (693), Expect = 1.485e-86 Identity = 135/275 (49.09%), Postives = 191/275 (69.45%), Query Frame = 0
Query: 77 EWELDCYSRPVVGEDGKKLWELMVCDSLGEFRAVETMPSNMVNSRELRKLVEKVIEDAPVKPRVIRFFRNAMFNMVSLALKDLKVRVVPSRSTNALYSWIDEREREVYAKLPGYDPQMRDSN--DVFGLREPEVMPDGLMGDKYAFMCLPVSQFL-DGEVNYENSGIGRLFQLDASLPRDEQVQGLVIYSSRAKSIAAWLHSMELCFIKANFSKRIMVLEVGIDTQYLMATLNDIRRVEAQIFEQGKEKLGGVHFLALQTDEESDGVEGFFLLRE 348
EWELDCYSRPV GKKLWE+++ DS G FR +T+PSN VNS+ LR++V+ ++E A VKP IRFFR AMFNM+++AL +L V PSR T AL SW+++R VY ++ G++ M S +R P +PD L G+KYAF+ LPV++FL G V+ N G+GR+ + +P D VQG+VI ++RA+++A+WL E+ + A+ KR++V+E IDTQYLMA LN+ +RVEA E+GK L G+HF+++Q +E+SD GF+LLRE
Sbjct: 1 EWELDCYSRPV-AVAGKKLWEVLITDSAGSFRFRQTLPSNQVNSKTLRQIVDDLMERADVKPNTIRFFRGAMFNMINIALMELPVTSKPSRCTFALASWLEDRHENVYPQMEGFNANMVGSTIPSFLDVRTPVRLPDALRGEKYAFVALPVAEFLPGGSVDATNIGVGRICTIPRDIPADAFVQGVVILTNRAEALASWLAGTEVVALTADLRKRVLVMETDIDTQYLMAKLNESQRVEAASLEEGKAGLKGLHFVSVQENEDSDPT-GFWLLRE 273
BLAST of EWM28702.1 vs. NCBI_GenBank
Match: gi|1072237183|gb|OEU21910.1| (DUF1092-domain-containing protein [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 261.151 bits (666), Expect = 9.073e-82 Identity = 131/292 (44.86%), Postives = 193/292 (66.10%), Query Frame = 0
Query: 72 ERLAQEWELDCYSRPVVGEDGKKLWELMVCDSLGEFRAVETMPSNMVNSRELRKLVEKVIEDAPV--KPRVIRFFRNAMFNMVSLALKDLKVRVVPSRSTNALYSWIDEREREVYAKLPGYDPQMRDSNDV-------FGLREPEVMPDGLMGDKYAFMCLPVSQFL-DGEVNYENSGIGRLFQLDASL-----PRDEQVQGLVIYSSRAKSIAAWLHSMELCFIKANFSKRIMVLEVGIDTQYLMATLNDIRRVEAQIFEQGKEKLGGVHFLALQTDEESDGVEGFFLLRE 348
++ + +WELDCYSRPV+ GKKLWE+++ DS G FR V+T+PSN VNS+E+R+ VE ++ED+ + KP IRFFR AMFNM+++AL +L V PSR T ++ W++ER ++VY K+ GY M + + +R P MPD L G+KYAF+ LP+++FL G++N N G+GRL + S P D VQG+VI + R + +AAWL E+ + A+ KR ++++ IDT+YLMA L+D +R E FE+GK+ L G+HF+ +Q DE+ D GF+L+RE
Sbjct: 40 KKTSDDWELDCYSRPVIAPGGKKLWEVLITDSTGSFRFVKTLPSNKVNSKEVRQTVEDLMEDSRIESKPSTIRFFRGAMFNMINIALSELDVVSRPSRGTYSIAQWLEERHKDVYPKMEGYQANMGVGSGLGAGVPSFLDVRTPVKMPDALRGEKYAFVALPLAEFLPGGDINDNNIGVGRLCTISDSFLEDLPPADTFVQGVVILTQRPEPLAAWLAGTEVASMSADLRKRNLIMDTDIDTRYLMARLDDNQREEGVAFEEGKDALNGLHFVCVQRDEDDDPA-GFWLMRE 330
BLAST of EWM28702.1 vs. NCBI_GenBank
Match: gi|1210523619|dbj|GAX17579.1| (hypothetical protein FisN_18Lh230 [Fistulifera solaris]) HSP 1 Score: 258.455 bits (659), Expect = 4.040e-80 Identity = 136/289 (47.06%), Postives = 193/289 (66.78%), Query Frame = 0
Query: 72 ERLAQEWELDCYSRPVVGEDGKKLWELMVCDSLGEFRAVETMPSNMVNSRELRKLVEKVIEDAPV-KPRVIRFFRNAMFNMVSLALKDLK-VRVVPSRSTNALYSWIDEREREVYAKLPGYDPQMRDSN---DVFGLREPEVMPDGLMGDKYAFMCLPVSQFL-DGEVNYENSGIGRLFQLDA------SLPR-DEQVQGLVIYSSRAKSIAAWLHSMELCFIKANFSKRIMVLEVGIDTQYLMATLNDIRRVEAQIFEQGKEKLGGVHFLALQTDEESDGVEGFFLLR 347
+ + +WELDCYSRPV+ GKKLWE+++CDS FR + +PS+ VNS+ LR++VE+ +E P KP VIRFFR AMFNM+++ALK+L + PSR T AL +W++ER VY K+ GY+ QM ++ ++ P +PD L G++YAF+ LP+++FL G VN + G+GRL L SLP D V G+V+ + RAK++A WL EL +KA+ KR +++E +DTQYLMA LND +R E EQ K++L G+HF+++Q DEESD EGF+LLR
Sbjct: 80 DEVTDQWELDCYSRPVIQPGGKKLWEVLICDSGNTFRFRQELPSSQVNSKTLRQVVEQCVELVPTAKPSVIRFFRGAMFNMMNVALKELPDITAKPSRCTFALAAWLEERHATVYPKMEGYNAQMMNTATGASFLNVQTPVKLPDSLRGERYAFVSLPLAEFLPGGGVNDDTIGVGRLCPLPPALLWQQSLPAGDTFVSGVVLMTPRAKAMATWLAGTELMSLKADLRKRQLIMETDLDTQYLMARLNDEQRAEGAAMEQAKDQLQGLHFVSVQVDEESDP-EGFWLLR 367
BLAST of EWM28702.1 vs. NCBI_GenBank
Match: gi|397628715|gb|EJK69024.1| (hypothetical protein THAOC_09759, partial [Thalassiosira oceanica]) HSP 1 Score: 258.455 bits (659), Expect = 5.571e-80 Identity = 134/270 (49.63%), Postives = 184/270 (68.15%), Query Frame = 0
Query: 84 SRPVVGEDGKKLWELMVCDSLGEFRAVETMPSNMVNSRELRKLVEKVIEDAPVKPRVIRFFRNAMFNMVSLALKDLKVRVVPSRSTNALYSWIDEREREVYAKLPGYDPQMRDSNDVFG----LREPEVMPDGLMGDKYAFMCLPVSQFLD-GEVNYENSGIGRLFQLDASLPRDEQVQGLVIYSSRAKSIAAWLHSMELCFIKANFSKRIMVLEVGIDTQYLMATLNDIRRVEAQIFEQGKEKLGGVHFLALQTDEESDGVEGFFLLRE 348
SRP GKKLWE+++ DS G R ++PSN VNSRE+RK+VE VI ++ VKP IRFFR AMFNM+++AL ++ V PSR T AL W++ER R+VY ++ GY V G +R +PD L G+KYAF+ LP+++F++ G VN EN G+GRL +D++LP D VQG+VI +SRAK++A+WL E+ IKA+ KR +V+E ID QYLMA L+D +R EA FE+GK+ L G+HF+++Q DE D GF+LLRE
Sbjct: 112 SRP---GGGKKLWEILITDSSGNLRVCRSLPSNKVNSREVRKVVEDVIGESEVKPGTIRFFRGAMFNMINIALSEIDVVAKPSRCTFALAQWLEERNRDVYPQMEGYQAAKARLGGVGGTFLDIRTAVKLPDALRGEKYAFVGLPLAEFIEGGSVNNENIGVGRLCPVDSTLPADSFVQGVVILTSRAKALASWLAGTEVGGIKADIRKRELVMETDIDNQYLMAKLDDDQRREAANFEEGKDSLNGLHFVSVQEDENDDPA-GFWLLRE 377
BLAST of EWM28702.1 vs. NCBI_GenBank
Match: gi|1210523380|dbj|GAX18017.1| (hypothetical protein FisN_18Hh230 [Fistulifera solaris]) HSP 1 Score: 256.529 bits (654), Expect = 1.452e-79 Identity = 133/284 (46.83%), Postives = 190/284 (66.90%), Query Frame = 0
Query: 72 ERLAQEWELDCYSRPVVGEDGKKLWELMVCDSLGEFRAVETMPSNMVNSRELRKLVEKVIEDAPV-KPRVIRFFRNAMFNMVSLALKDLK-VRVVPSRSTNALYSWIDEREREVYAKLPGYDPQMRDSN---DVFGLREPEVMPDGLMGDKYAFMCLPVSQFL-DGEVNYENSGIGRLFQLDA--SLPRDEQVQGLVIYSSRAKSIAAWLHSMELCFIKANFSKRIMVLEVGIDTQYLMATLNDIRRVEAQIFEQGKEKLGGVHFLALQTDEESDGVEGFFLLR 347
+ + +WELDCYSRPV+ GKKLWE+++CDS FR + +PS+ VNS+ LR++VE+ +E P KP VIRFFR AMFNM+++ALK+L + PSR T AL +W++ER VY ++ GY+ QM ++ ++ P +PD L G++YAF+ LP+++FL G VN + G+GRL L D V G+V+ + RAK++A WL EL IKA+ KR +++E +DTQYLMA LND +R E EQ K++L G+HF+++Q DEESD EGF+LLR
Sbjct: 75 DEVTDQWELDCYSRPVIQPGGKKLWEVLICDSGNSFRFRQELPSSQVNSKTLRQVVEQCVELVPTAKPSVIRFFRGAMFNMMNVALKELPDITAKPSRCTFALAAWLEERHATVYPQMEGYNAQMMNTAAGASFLNVQTPVKLPDSLRGERYAFVSLPLAEFLPGGGVNDDTIGVGRLCPLPPLQQSAGDTFVSGVVLLTPRAKAMATWLAGTELMSIKADLRKRQLIMETDLDTQYLMARLNDEQRAEGAAMEQAKDQLQGLHFVSVQVDEESDP-EGFWLLR 357
BLAST of EWM28702.1 vs. NCBI_GenBank
Match: gi|922864930|gb|KOO32085.1| (psab translation factor [Chrysochromulina sp. CCMP291]) HSP 1 Score: 254.218 bits (648), Expect = 5.721e-79 Identity = 133/275 (48.36%), Postives = 184/275 (66.91%), Query Frame = 0
Query: 78 WELDCYSRPVVGEDGKKLWELMVCDSLGEFRAVETMPSNMVNSRELRKLVEKVIEDAPVKPRVIRFFRNAMFNMVSLALKDLK-VRVVPSRSTNALYSWIDEREREVYAKLPGYDPQMRDSNDVFGLREPEVMPDGLMGDKYAFMCLPVSQFL-DGEVNYENSGIGRLFQLDA-SLPRDEQVQGLVIYSSRAKSIAAWLHSMELCFIKANFSKRIMVLEVGIDTQYLMATL-NDIRRVEAQIFEQGKEKLGGVHFLALQTDEESDGVEGFFLLRE 348
W+LD YSRPV G DGKKLWEL+V D G F+ VE +PSN VNSRELR V+++I++A V+P IRFFR M NM+S+AL +L V+ PSR T ALY WI+ERER VY +PGY + D GL+ P +P+ L G++YA LP ++F+ G + +N G G L L A L D V G+VI+S R+K+IAAWL ++L F+ A R + +EVG+DTQYL+A + I+ EA+ FE+ K GG+HFL++Q+ E++ +GF+LLR+
Sbjct: 53 WQLDFYSRPVQGADGKKLWELLVTDETGAFKHVEAVPSNCVNSRELRSRVQRLIDEAEVRPSSIRFFRAQMKNMISIALNELPDVQCKPSRVTYALYDWIEERERTVYPSMPGY---RKPRPDPAGLKLPVKLPEQLRGEQYAVATLPYAEFIPGGSITEDNIGFGALCPLPAMELEPDNMVAGVVIFSRRSKAIAAWLTGLDLAFVSAVLESRELHIEVGLDTQYLLARMRTPIQTAEAETFEERKRATGGLHFLSIQSGPEAEQPDGFWLLRD 324
BLAST of EWM28702.1 vs. NCBI_GenBank
Match: gi|676389451|ref|XP_009038004.1| (hypothetical protein AURANDRAFT_27892 [Aureococcus anophagefferens] >gi|323451508|gb|EGB07385.1| hypothetical protein AURANDRAFT_27892 [Aureococcus anophagefferens]) HSP 1 Score: 240.35 bits (612), Expect = 1.719e-73 Identity = 128/289 (44.29%), Postives = 191/289 (66.09%), Query Frame = 0
Query: 74 LAQEWELDCYSRPVVGEDGKKLWELMVCDSLGEFRAVETMPSNMVNSRELRKLVEKVIEDAPVKPRVIRFFRNAMFNMVSLALKDL-----KVRVVPSRSTNALYSWIDEREREVYAKLPGYDPQM------RDSNDVFGLREPEVMPDGLMGDKYAFMCLPVSQFLDGE-VNYENSGIGRLFQLDASLPRDEQVQGLVIYSSRAKSIAAWLHSMELCFIKANFSKRIMVLEVGIDTQYLMATLNDIRRVEAQIFEQGKEKLGGVHFLALQTDEESDGVE--GFFLLRE 348
++ EWELDC+SRPV+ + GKKLWEL++ D+ G++R V +P+ VNS +RK +E VI APVKP VIRFFR M NM+++AL + +RV PSR+T+ALY WI+ERE +VY + GY P R + V R +P+GL G++YAF+ LP+S+ L G + EN G+G+L + + D + G+ I + R+ ++A L S EL ++A+ ++R +VL+V +D +L+A L+D +RVEA FE+ K+ LGG+HF+ +Q+ E+ DGVE GF+LLRE
Sbjct: 59 ISSEWELDCFSRPVLVK-GKKLWELLITDASGQWRDVVALPATGVNSVAVRKAIEDVIARAPVKPTVIRFFRRQMLNMLTIALNGVAANRPTLRVTPSRATHALYDWIEEREADVYPGMEGYSPGAGAATRDRMTAPVTASR----LPEGLRGEQYAFVTLPLSEVLSGGGITEENVGVGKLINVKPAYEVDALLPGIAILTRRSDALAMSLASTELAGVRADAAQRQLVLDVALDESFLVAKLDDDQRVEAAAFEKAKQGLGGLHFVVVQSPED-DGVEPAGFWLLRE 341 The following BLAST results are available for this feature:
BLAST of EWM28702.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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