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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100002g71.4885.mrna |
| Orig protein id | gnl|cribi|Naga_100002g71.4885 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002458.1 | supercontig | CM002458.1:538446..539536 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna1947 ID=rna1947|Name=rna1947|organism=Nannochloropsis gaditana|type=mRNA|length=3030bp
ACATGGGCCCAAAATATGGTTCTCCGCCTTTCCCGACAATTGACAGTTTT
CCTCTTTTAGCACACATATAGATTCTACAAGCGAGTTACACACCACGGAG
GAAAGAGGCTTACTGGCCAAGAAACCTCAAATGGATGACATCCTTATGCT
CTAACTTTTTTGGCACCATCCGAAGAGGAGCGGATTCCTGGTATCAAAGG
AGGCAGCATGGAGCAGCTATTTAAACGATACCATAATGTCTCTTATACTA
TCCCAGTGCTCAATGTTACCATTACAACAAGTGACATCACTGAGTACGCG
AGGATCCATTCTCTAAATATCGGTCCAATTGTCGCATTACTTTTCATGGG
AAGCATCATGACACTTGTGTGGTTTTATCTTTTAGTTTGTGTTTGCTGCT
GTTTATCTAGACGAGGAGAAGCAAGTCGGGGAACGTCACAAGTCGTACCA
GGAGCAGCATATAGTTCGCCTACATCGCCGTCAAGCTCAGCTTCCCCCCT
TGCATGCAAGATAGAGTTGCCCTCTTCCTCCATCGAGCGGTATGACGACG
AACAAAGGGGTAATGAATCAAAAAACATGCATCGATCGCGATCACTGGAG
GAAGAACACCGAAAATACTCATTCAAAAGCCTGTATATCGCAAGCATCAT
TTTAAGTGCTCTCTTGGGCCTTGCTGTCGTCAGTATTGTAATTTATCAGA
GCAAAATTGACGCATCCGCAAGAATTCTCATGGGGGACGTAGAAAACTTA
GTACTTGATTCAGCCAATGCCCTGTGCACATCTGATGCTTCATCCAGATT
TTGTACTCCTCAATCAGCGGGCGACTTCGTGCGCACGGCAGAAACACGTG
CTAGCGGAATGCTGACCAACCTTGTGGACTTGCTCCAATCATTGGGTGAA
GAGCTCTATCCTCCACTTAACGGCATGATTGATGATCTAGATATGGCCGA
AGCAGACTTGGAAGATATCAAAGTATACATCAGTCTCATTATGGGCAACC
GATCTCGTATCCAGGAGTACAATGACTGGCTCTTTGCGACCTCTCCCGAC
GATGAAGTCACTCCTTTAACGGCTGCACTGCCAAAAGGGAAGCTACCCAA
TGTGACAGCTGAGCAGCTGACCAAGCTTGATGACCACCAAAGCGTAATCA
TTATGACACGAAACACTTCTGAGGATGTCTTCGGCAAAATCCAGAATTTT
ATGCAGACGGATGTTCCGGATGCTGTGACCCGTTTTAATACAAGCGCACC
GCCGGGGACTAGCACACAGCTACTCATGAAGCCATTACAAAACGTGTTTG
AGAAACTTCTACGAGCTAGGAGCCTCATGCTTCGGTATTACGCTCTCGTA
TATGAGCAAGGAGAACGAATTGAAGACTACTTGGCCCCAAAGACTTTGGC
AGTAAGTGTCATATTTTTGCTACCCTTCGTCCTTCAGATCGTCTTCACAA
TTCTCAACAGGAGTAACCAGAAATGCTCGGGCCATTTGCTCACGAACATG
TGCTGCTCATATCTGTGTTCCGTCGTCTTCTTACTTCTGGCAATAATCTT
CTCTCTACTGGCGGTTGTATCGGGTACTGTGTGCGAATACCACCTTACTT
TACTTGCGAAGGTACCCGTCCAGAATGTGACAATCAATGATGTGCAGCTC
TCTTTCACGCCTGCTGTCATAGAGGACATCCTCAATTGTCCATCATACCC
TACCGCGCCAGCCGGTGCTACGTCCGGGAATAACTTCATCAGCCTTTTGG
GCGGGGAAAAGATTTTTGACATTACCTCGCAGACAGACGAAATCATCGCA
CAGGTGGAGGAAGCACGTACATCGTTTACGCTTAATGCGCAAATTCAGCA
ATCAATCTATCAGCTCTCCATTCTTGAAAATTTTACAGCACTTGATTTTG
CTAATAGCAGTGAAATTCTTTCTTACCGTCTGGAAATCGACGCTTTGCTA
GAGGACTTACCGCCTGCTACCATGGATCGTGATGATGAAGTCCAACGAGC
GAGCTTGACAGCCTATTACCTGACAAATGGAAGCTTTTCTTGGGACTCCT
ATCAAGAAAGCCTTGAGGAGATCAATGCCATATTGGCAGAGGCAGCGCCG
ATTCCCGATGGATTCTTCTCCTCTTATACTTTTCAAACCGTATGGAATTT
TACACAGGCGACTGTGGAGGCCGACAGTGCGTGGATGGATGTCACTTTTG
TCCGGCCAAAAAATTATGAAGCTTTGATCGCTGGCCTTGTCCAGATGGAT
CCCTTCACAGGTGCAGTCAACACCGCTGCAAAGACAAATATACAGGTGCA
CGCCAACCTTTCAGCGATCCGATATGCTCTACGTGACATACAGTCTAATA
TTCAGGAGATCGATGCGGCGCAGTCAAATCTTAGGACCGCTCAAACGCAG
TTGGACGGGATGTTTTCTGATCTCTTGGACCGCCTAAACGGCATTGCAAG
GAACCTTAGCTTACAAGAAGAAGGCATTCGGGGCCTTGCTTCTTTTGCGG
ATAGTGCGCCTGACTACACAAAATGCGGCTTTGTCGGCAATTTTTACAGG
GAAGGCTTTCAAAAAAACTTTTGCGGTAATCTTCACAACAATCTCTCCAT
CTCATGGCCTTTTATGCTCGTGGCAGCTAGCCTTCTATTTCTGTCATTTA
TAACCTTCAGTTGTTTTCTGCGAAAGCCTGAATGGTATAGGGATCCCAGC
TACAGTCAATTAGAGGATCGAAACAACCTTACACCCGGACGCACACCTCG
GGGCTCCACCTTAATGATCGCTTAAATTACACCCAAATTAAGGCTTTTGA
GCTAGGGATTCGCCTATTCCACATACAAGACAAATAAATCGACCGCTCGC
AAAGCCCTATCATCAAGACTGGCATCTACCGCGGCTGGAAAAAGCCACAA
TGTATAAAAAAAGAAAAGCGCTAATATACTAAAAGCGAGAGACGGCATGT
ACTTAAATATGAGTGTATCTTTCCTGCCCGTATAACGACACGTATGATCA
CCTTACAGTTCAAAAAATGTGGCTTACTGC back to topprotein sequence of rna1947 >rna1947-protein ID=rna1947-protein|Name=rna1947|organism=Nannochloropsis gaditana|type=polypeptide|length=229bp
MHHMLCTPLMIYLRLNCVMVGSDVIISHSILQGSSVHRLSYQDHDLLRNT
LLTRPPPTALTAGWRRTTWRVPTRPPPTALTAGWRRTTWLVPTRPPPYGS
HRWLAADDMAGPYTPPPYGSHRWLAADDMAGPYTPPPYGSHRWLAADDMA
GPYAPPPYSGSAKFKVVDVVEEHDKKDVAGSSYTAKAENVFFLESRHTDK
SGRHRITTTASGPKWEQHVKNYLPIENVY back to topmRNA from alignment at CM002458.1:538446..539536- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna1947 ID=rna1947|Name=rna1947|organism=Nannochloropsis gaditana|type=mRNA|length=1091bp|location=Sequence derived from alignment at CM002458.1:538446..539536- (Nannochloropsis gaditana)
ATGCATCATATGTTGTGTACGCCCTTGATGATCTATTTGCGTCTGAATTG
TGTGATGGTTTGATAGCTGCATATCCAGTGCTTACCATATTAACTTCTAC
AATTTGTTTGGTGACAACCTTTTCGAGATGCGTAAGCAAATGCAGATGAG
GGCATGGTGCCGTACACGAACATTTGTGAATACATTCGGTCTGCGCTTTG
CAATAGCATGGTCGATGTCTCCCGTCAAGCATCACGATTTTCTTTATACC
AACTCAGGTAGGATCTGACGTAATTATCTCGCATTCTATTCTTCAGGGAA
GCAGCGTCCACAGACTGAGCTACCAGGATCATGACCGTCATCCACCGTAC
AACGCTAATTGTCCTGTCAGCTTTCCTTTTTGGAACTAGTGCTGCGCAAT
GTAAGTGCACACACCCTAGACAATACAATTGAAAGTTATACCAGTCTCAA
CCATCCCCCTCTAATGTCTCCCCATGATCGATTTCAGACTCTCCTTACAC
GCCCCCCCCCTACGGCTCTCACCGCTGGCTGGCGGCGGACGACATGGCGG
GTCCCTACACGCCCCCCCCCTACGGCTCTCACCGCTGGCTGGCGGCGGAC
GACATGGCTGGTCCCTACACGCCCCCCCCCCTACGGCTCTCACCGCTGGC
TGGCGGCGGACGACATGGCGGGTCCCTACACGCCCCCCCCCTACGGCTCT
CACCGCTGGCTGGCGGCAGACGACATGGCTGGTCCCTACACGCCCCCCCC
TTACGGCTCTCACCGCTGGCTGGCGGCGGACGACATGGCTGGTCCCTACG
CGCCACCACCCTATTCTGGCTCTGCCAAGTTTAAAGTCGTTGACGTCGTA
GAGGAGCATGACAAGAAGGACGTTGCAGGATCTTCATATACGGCGAAGGC
AGAAAACGTATTTTTTTTGGAGTCCCGCCATACAGATAAAAGCGGTCGTC
GCTTTTTGCGACGAGCCTAATATGCGGATTCCTTCGATCTTTTTGAGCAG
GCCTTAAGGACACAGGATAACCACAACTGCATCGGGGCCTAAGTGGGAGC
AGCATGTGAAAAACTATTTACCGATTGAAAATGTCTACTGA back to topCoding sequence (CDS) from alignment at CM002458.1:538446..539536- >rna1947 ID=rna1947|Name=rna1947|organism=Nannochloropsis gaditana|type=CDS|length=3450bp|location=Sequence derived from alignment at CM002458.1:538446..539536- (Nannochloropsis gaditana)
GACACAGGATAACCACAACTGCATCGGGGCCTAAGTGGGAGCAGCATGTG
AAAAACTATTTACCGATTGAAAATGTCTACTGAACTCTCCTTACACGCCC
CCCCCCTACGGCTCTCACCGCTGGCTGGCGGCGGACGACATGGCGGGTCC
CTACACGCCCCCCCCCTACGGCTCTCACCGCTGGCTGGCGGCGGACGACA
TGGCTGGTCCCTACACGCCCCCCCCCCTACGGCTCTCACCGCTGGCTGGC
GGCGGACGACATGGCGGGTCCCTACACGCCCCCCCCCTACGGCTCTCACC
GCTGGCTGGCGGCAGACGACATGGCTGGTCCCTACACGCCCCCCCCTTAC
GGCTCTCACCGCTGGCTGGCGGCGGACGACATGGCTGGTCCCTACGCGCC
ACCACCCTATTCTGGCTCTGCCAAGTTTAAAGTCGTTGACGTCGTAGAGG
AGCATGACAAGAAGGACGTTGCAGGATCTTCATATACGGCGAAGGCAGAA
AACGTATTTTTTTTGGAGTCCCGCCATACAGATAAAAGCGGTCTGCTGCG
CAATGTAGGATCTGACGTAATTATCTCGCATTCTATTCTTCAGGGAAGCA
GCGTCCACAGACTGAGCTACCAGGATCATGACCATGCATCATATGTTGTG
TACGCCCTTGATGATCTATTTGCGTCTGAATTGTGTGATGGACACAGGAT
AACCACAACTGCATCGGGGCCTAAGTGGGAGCAGCATGTGAAAAACTATT
TACCGATTGAAAATGTCTACTGAACTCTCCTTACACGCCCCCCCCCTACG
GCTCTCACCGCTGGCTGGCGGCGGACGACATGGCGGGTCCCTACACGCCC
CCCCCCTACGGCTCTCACCGCTGGCTGGCGGCGGACGACATGGCTGGTCC
CTACACGCCCCCCCCCCTACGGCTCTCACCGCTGGCTGGCGGCGGACGAC
ATGGCGGGTCCCTACACGCCCCCCCCCTACGGCTCTCACCGCTGGCTGGC
GGCAGACGACATGGCTGGTCCCTACACGCCCCCCCCTTACGGCTCTCACC
GCTGGCTGGCGGCGGACGACATGGCTGGTCCCTACGCGCCACCACCCTAT
TCTGGCTCTGCCAAGTTTAAAGTCGTTGACGTCGTAGAGGAGCATGACAA
GAAGGACGTTGCAGGATCTTCATATACGGCGAAGGCAGAAAACGTATTTT
TTTTGGAGTCCCGCCATACAGATAAAAGCGGTCTGCTGCGCAATGTAGGA
TCTGACGTAATTATCTCGCATTCTATTCTTCAGGGAAGCAGCGTCCACAG
ACTGAGCTACCAGGATCATGACCATGCATCATATGTTGTGTACGCCCTTG
ATGATCTATTTGCGTCTGAATTGTGTGATGGACACAGGATAACCACAACT
GCATCGGGGCCTAAGTGGGAGCAGCATGTGAAAAACTATTTACCGATTGA
AAATGTCTACTGAACTCTCCTTACACGCCCCCCCCCTACGGCTCTCACCG
CTGGCTGGCGGCGGACGACATGGCGGGTCCCTACACGCCCCCCCCCTACG
GCTCTCACCGCTGGCTGGCGGCGGACGACATGGCTGGTCCCTACACGCCC
CCCCCCCTACGGCTCTCACCGCTGGCTGGCGGCGGACGACATGGCGGGTC
CCTACACGCCCCCCCCCTACGGCTCTCACCGCTGGCTGGCGGCAGACGAC
ATGGCTGGTCCCTACACGCCCCCCCCTTACGGCTCTCACCGCTGGCTGGC
GGCGGACGACATGGCTGGTCCCTACGCGCCACCACCCTATTCTGGCTCTG
CCAAGTTTAAAGTCGTTGACGTCGTAGAGGAGCATGACAAGAAGGACGTT
GCAGGATCTTCATATACGGCGAAGGCAGAAAACGTATTTTTTTTGGAGTC
CCGCCATACAGATAAAAGCGGTCTGCTGCGCAATGTAGGATCTGACGTAA
TTATCTCGCATTCTATTCTTCAGGGAAGCAGCGTCCACAGACTGAGCTAC
CAGGATCATGACCATGCATCATATGTTGTGTACGCCCTTGATGATCTATT
TGCGTCTGAATTGTGTGATGGACACAGGATAACCACAACTGCATCGGGGC
CTAAGTGGGAGCAGCATGTGAAAAACTATTTACCGATTGAAAATGTCTAC
TGAACTCTCCTTACACGCCCCCCCCCTACGGCTCTCACCGCTGGCTGGCG
GCGGACGACATGGCGGGTCCCTACACGCCCCCCCCCTACGGCTCTCACCG
CTGGCTGGCGGCGGACGACATGGCTGGTCCCTACACGCCCCCCCCCCTAC
GGCTCTCACCGCTGGCTGGCGGCGGACGACATGGCGGGTCCCTACACGCC
CCCCCCCTACGGCTCTCACCGCTGGCTGGCGGCAGACGACATGGCTGGTC
CCTACACGCCCCCCCCTTACGGCTCTCACCGCTGGCTGGCGGCGGACGAC
ATGGCTGGTCCCTACGCGCCACCACCCTATTCTGGCTCTGCCAAGTTTAA
AGTCGTTGACGTCGTAGAGGAGCATGACAAGAAGGACGTTGCAGGATCTT
CATATACGGCGAAGGCAGAAAACGTATTTTTTTTGGAGTCCCGCCATACA
GATAAAAGCGGTCTGCTGCGCAATGTAGGATCTGACGTAATTATCTCGCA
TTCTATTCTTCAGGGAAGCAGCGTCCACAGACTGAGCTACCAGGATCATG
ACCATGCATCATATGTTGTGTACGCCCTTGATGATCTATTTGCGTCTGAA
TTGTGTGATGGACACAGGATAACCACAACTGCATCGGGGCCTAAGTGGGA
GCAGCATGTGAAAAACTATTTACCGATTGAAAATGTCTACTGAACTCTCC
TTACACGCCCCCCCCCTACGGCTCTCACCGCTGGCTGGCGGCGGACGACA
TGGCGGGTCCCTACACGCCCCCCCCCTACGGCTCTCACCGCTGGCTGGCG
GCGGACGACATGGCTGGTCCCTACACGCCCCCCCCCCTACGGCTCTCACC
GCTGGCTGGCGGCGGACGACATGGCGGGTCCCTACACGCCCCCCCCCTAC
GGCTCTCACCGCTGGCTGGCGGCAGACGACATGGCTGGTCCCTACACGCC
CCCCCCTTACGGCTCTCACCGCTGGCTGGCGGCGGACGACATGGCTGGTC
CCTACGCGCCACCACCCTATTCTGGCTCTGCCAAGTTTAAAGTCGTTGAC
GTCGTAGAGGAGCATGACAAGAAGGACGTTGCAGGATCTTCATATACGGC
GAAGGCAGAAAACGTATTTTTTTTGGAGTCCCGCCATACAGATAAAAGCG
GTCTGCTGCGCAATGTAGGATCTGACGTAATTATCTCGCATTCTATTCTT
CAGGGAAGCAGCGTCCACAGACTGAGCTACCAGGATCATGACCATGCATC
ATATGTTGTGTACGCCCTTGATGATCTATTTGCGTCTGAATTGTGTGATG back to top
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