rna1944, rna1944 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1944
Unique Name	rna1944
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	946
Alignment location	CM002458.1:530226..531551 -

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Properties


Property Name	Value
Product	Transposase IS605 family, OrfB
Orig transcript id	gnl\|cribi\|Naga_100002g75.4842.mrna
Orig protein id	gnl\|cribi\|Naga_100002g75.4842
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:530226..531551 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100002g75	gene1857	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1944	rna1944-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28723.1	cds1939	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:530226..531551-
coding sequence from alignment at CM002458.1:530226..531551-

mRNA sequence

>rna1944 ID=rna1944|Name=rna1944|organism=Nannochloropsis gaditana|type=mRNA|length=946bp
ATGCAAGAGGAGTATTATCGCCTGAGTCGCGCGATTAACAGGGGCCTGAA
CGAGCTGACAAGAGGGCGTTTGGATGGAGGAGGGAGCATTTCCGGAGGCC
ATGACACGATGCCTCCGTCAAGACTTTTGCGCCTGGTTGCAGAGATAGAC
TTGGACCTTGCCGAGGCGGAAGGGCAGGTGAAAGGTTTGGAAATTGAGGT
GCAAGATATGCCCGTGAAGGACAAGAGGATGTGTCGAGAGAAGGTGTTGC
AATTTCGCAATGACTTGAAGGCAATGCGGCGCAGCTTCGAGGCTGCCAAG
GCCCGGGCCGAAAGACATATGTTGTTGCAGCTGAGCCAAGTCAGCGGCAA
AAGAAAGAATATCGCAGAGCGTCTCATGAGTTCTACAGAGCAGTTGCATG
ATGCAAGAAAGGTTGTGGATGAAACGGAGCACATTGGTGAAGGAATCATT
TATCAGATGGAGGCGCAACGAGAACAGCTTGTACGAGCTTCCGAGCAGGT
GCAAGAGACCAACTGGTTCACGCGATCGGCACGCCAAGTCATGAATAACA
TGCATTTACGAGCGGTTCGACATAAAGCCTGTCTCATCCTTATCATCGGT
TTTCTCCTCGTGCTTATCGGGATTGTGTTCAATTACGGTGTTCTGGCAAG
GTATCATAAGAAAAATAGAGAACAATAAAAGATGGAAACTATAACGTGTA
CATTATCGTGCTTATTGAGTGATGATGATATCGATGCGAATTACAAAAGC
ATCAATAAGTGTATAGTTGAACATAATAGAGAGCTCCCGAAAGATCCTAG
CACAAAGAAAATGTCTCAATTAATGGTGAAGGTTTTTATGTCGAAACTCA
AAGGAACACATACAAAAGGATCTATTTCTCAAGCCACACGATCTAGTGCG
GTGCTCATGGAGAACGCAATTTACTTGGGCGTCGCGAATTCATTCC

protein sequence of rna1944

>rna1944-protein ID=rna1944-protein|Name=rna1944|organism=Nannochloropsis gaditana|type=polypeptide|length=268bp
MLIFSHYNFRKRLLDKARNYKDTNVLIVNEAYTSKTCTCCGTIHNKFGVN
KTFDCRSGNAKSNGFRPLALSQGLAIRIQRLKYSFLARKEERAARFAAVL
AINARWLSVREEGPRLQQSLRHPWARRSYGRPGRRSNQNFTQDSLLGAAI
ACRQFFFEDAAIDAITYNAMNIERPLAGLSEERIVSDRIARIYESFVFGS
RDAEAEVESGLAHLFLVIALEVTLNFRYVTLSVKAGVERAPVYTDLVIAL
KLHSGLETRKSRPSSEEF

mRNA from alignment at CM002458.1:530226..531551-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1944 ID=rna1944|Name=rna1944|organism=Nannochloropsis gaditana|type=mRNA|length=1326bp|location=Sequence derived from alignment at CM002458.1:530226..531551- (Nannochloropsis gaditana)
ATGCTCATCTTCTCCCACTACAATTTTCGCAAGCGACTCCTGGACAAGGC
TCGCAATTACAAAGACACCAATGTGTTGATTGTGAACGAGGCCTACACCA
GCAAAACCTGCACCTGTTGTGGAACAATTCACAACAAGTTTGGTGTCAAC
AAAACATTCGATTGTCGGTCTTGTTCGTAAAAAGGCGATCGAGGCGTCAA
TGGCGCGCGAAACATTTATCCTCGCTGCGTTGTTGAGGCAGCACTGGATG
GGATGGTGCATCCAGGAGAGGGGCGGGGCGCATGCGCCACCTTTGGAAAA
AGCAAGAACAAATTTCGATGGGCAATAGTCCTTCTCTTATTCATTTCGTT
TATGCCCTCACCTGAATCCATCAAAGGGAATTCATACGTCGTGCTGGCGT
CTGTATAAAGCTTATACCCTTTGTTTAGATCTGGGAATGCCAAGAGTAAC
GGTTTTCGTCCTTTGGCTTTGTCCCAGGGTCTTGCGATTCGAATCCAGCG
ACTGAAATACTCATTTCTTGCTAGAAAGGAAGAGAGAGCGGCAAGATTTG
CAGCTGTTTTGGCGATCAATGCACGGTGGTTGAGCGTGCGGGAGGAGGGC
CCGAGACTTCAGCAAAGGTGAGGTTGTGCCCAGGGAGGGGTAGACCCGCC
TGCCGGTCTTCGGGAAGGGGCTTGTCCTTCCCTCTTCCCCTTGTATGAGC
ATCCACCTTGTCTTCTCTTTTCCCTCCTGCCCTCGCGTCCACTCTCCTTC
CCCTCCCTCCCTGTCCCGGTGGCACCCTTTCTTATCCCCGTCAGCCTACG
TCATCCGTGGGCTCGTCGATCGTACGGTCGTCCGGGGCGTCGTTCAAATC
AAAATTTCACACAGGATTCGCTTTTGGGAGCCGCCATCGCTTGCAGGCAG
TTTTTCTTTGAAGACGCTGCAATAGACGCAATCACTTATAACGCTATGAA
CATCGAACGCCCGCTAGCTGGCCTCTCCGAGGGTAGCCATTGATATGGGC
GAGATCTAGCACGTAAATATCTATAGATCTCCCTGTTAATTCTCTTGAGA
TGCCATTTCGTAGAACGCATTGTTTCAGATCGAATCGCTCGTATTTATGA
ATCCTTCGTTTTTGGGAGCCGAGACGCTGAAGCTGAAGTAGAATCCGGCC
TTGCACACCTGTTCCTTGTCATTGCACTAGAAGTCACTCTCAATTTTCGA
TACGTAACCCTATCAGTCAAAGCTGGAGTAGAACGGGCCCCTGTATATAC
GGATCTTGTCATTGCACTGAAATTGCATTCAGGTCTCGAAACGAGAAAAT
CTAGACCTTCAAGCGAGGAGTTTTGA

Coding sequence (CDS) from alignment at CM002458.1:530226..531551-

>rna1944 ID=rna1944|Name=rna1944|organism=Nannochloropsis gaditana|type=CDS|length=3228bp|location=Sequence derived from alignment at CM002458.1:530226..531551- (Nannochloropsis gaditana)
AACGCATTGTTTCAGATCGAATCGCTCGTATTTATGAATCCTTCGTTTTT
GGGAGCCGAGACGCTGAAGCTGAAGTAGAATCCGGCCTTGCACACCTGTT
CCTTGTCATTGCACTAGAAGTCACTCTCAATTTTCGATACGTAACCCTAT
CAGTCAAAGCTGGAGTAGAACGGGCCCCTGTATATACGGATCTTGTCATT
GCACTGAAATTGCATTCAGGTCTCGAAACGAGAAAATCTAGACCTTCAAG
CGAGGAGTTTTGACCTACGTCATCCGTGGGCTCGTCGATCGTACGGTCGT
CCGGGGCGTCGTTCAAATCAAAATTTCACACAGGATTCGCTTTTGGGAGC
CGCCATCGCTTGCAGGCAGTTTTTCTTTGAAGACGCTGCAATAGACGCAA
TCACTTATAACGCTATGAACATCGAACGCCCGCTAGCTGGCCTCTCCGAG
GATCTGGGAATGCCAAGAGTAACGGTTTTCGTCCTTTGGCTTTGTCCCAG
GGTCTTGCGATTCGAATCCAGCGACTGAAATACTCATTTCTTGCTAGAAA
GGAAGAGAGAGCGGCAAGATTTGCAGCTGTTTTGGCGATCAATGCACGGT
GGTTGAGCGTGCGGGAGGAGGGCCCGAGACTTCAGCAAAGATGCTCATCT
TCTCCCACTACAATTTTCGCAAGCGACTCCTGGACAAGGCTCGCAATTAC
AAAGACACCAATGTGTTGATTGTGAACGAGGCCTACACCAGCAAAACCTG
CACCTGTTGTGGAACAATTCACAACAAGTTTGGTGTCAACAAAACATTCG
ATTGTCGAACGCATTGTTTCAGATCGAATCGCTCGTATTTATGAATCCTT
CGTTTTTGGGAGCCGAGACGCTGAAGCTGAAGTAGAATCCGGCCTTGCAC
ACCTGTTCCTTGTCATTGCACTAGAAGTCACTCTCAATTTTCGATACGTA
ACCCTATCAGTCAAAGCTGGAGTAGAACGGGCCCCTGTATATACGGATCT
TGTCATTGCACTGAAATTGCATTCAGGTCTCGAAACGAGAAAATCTAGAC
CTTCAAGCGAGGAGTTTTGACCTACGTCATCCGTGGGCTCGTCGATCGTA
CGGTCGTCCGGGGCGTCGTTCAAATCAAAATTTCACACAGGATTCGCTTT
TGGGAGCCGCCATCGCTTGCAGGCAGTTTTTCTTTGAAGACGCTGCAATA
GACGCAATCACTTATAACGCTATGAACATCGAACGCCCGCTAGCTGGCCT
CTCCGAGGATCTGGGAATGCCAAGAGTAACGGTTTTCGTCCTTTGGCTTT
GTCCCAGGGTCTTGCGATTCGAATCCAGCGACTGAAATACTCATTTCTTG
CTAGAAAGGAAGAGAGAGCGGCAAGATTTGCAGCTGTTTTGGCGATCAAT
GCACGGTGGTTGAGCGTGCGGGAGGAGGGCCCGAGACTTCAGCAAAGATG
CTCATCTTCTCCCACTACAATTTTCGCAAGCGACTCCTGGACAAGGCTCG
CAATTACAAAGACACCAATGTGTTGATTGTGAACGAGGCCTACACCAGCA
AAACCTGCACCTGTTGTGGAACAATTCACAACAAGTTTGGTGTCAACAAA
ACATTCGATTGTCGAACGCATTGTTTCAGATCGAATCGCTCGTATTTATG
AATCCTTCGTTTTTGGGAGCCGAGACGCTGAAGCTGAAGTAGAATCCGGC
CTTGCACACCTGTTCCTTGTCATTGCACTAGAAGTCACTCTCAATTTTCG
ATACGTAACCCTATCAGTCAAAGCTGGAGTAGAACGGGCCCCTGTATATA
CGGATCTTGTCATTGCACTGAAATTGCATTCAGGTCTCGAAACGAGAAAA
TCTAGACCTTCAAGCGAGGAGTTTTGACCTACGTCATCCGTGGGCTCGTC
GATCGTACGGTCGTCCGGGGCGTCGTTCAAATCAAAATTTCACACAGGAT
TCGCTTTTGGGAGCCGCCATCGCTTGCAGGCAGTTTTTCTTTGAAGACGC
TGCAATAGACGCAATCACTTATAACGCTATGAACATCGAACGCCCGCTAG
CTGGCCTCTCCGAGGATCTGGGAATGCCAAGAGTAACGGTTTTCGTCCTT
TGGCTTTGTCCCAGGGTCTTGCGATTCGAATCCAGCGACTGAAATACTCA
TTTCTTGCTAGAAAGGAAGAGAGAGCGGCAAGATTTGCAGCTGTTTTGGC
GATCAATGCACGGTGGTTGAGCGTGCGGGAGGAGGGCCCGAGACTTCAGC
AAAGATGCTCATCTTCTCCCACTACAATTTTCGCAAGCGACTCCTGGACA
AGGCTCGCAATTACAAAGACACCAATGTGTTGATTGTGAACGAGGCCTAC
ACCAGCAAAACCTGCACCTGTTGTGGAACAATTCACAACAAGTTTGGTGT
CAACAAAACATTCGATTGTCGAACGCATTGTTTCAGATCGAATCGCTCGT
ATTTATGAATCCTTCGTTTTTGGGAGCCGAGACGCTGAAGCTGAAGTAGA
ATCCGGCCTTGCACACCTGTTCCTTGTCATTGCACTAGAAGTCACTCTCA
ATTTTCGATACGTAACCCTATCAGTCAAAGCTGGAGTAGAACGGGCCCCT
GTATATACGGATCTTGTCATTGCACTGAAATTGCATTCAGGTCTCGAAAC
GAGAAAATCTAGACCTTCAAGCGAGGAGTTTTGACCTACGTCATCCGTGG
GCTCGTCGATCGTACGGTCGTCCGGGGCGTCGTTCAAATCAAAATTTCAC
ACAGGATTCGCTTTTGGGAGCCGCCATCGCTTGCAGGCAGTTTTTCTTTG
AAGACGCTGCAATAGACGCAATCACTTATAACGCTATGAACATCGAACGC
CCGCTAGCTGGCCTCTCCGAGGATCTGGGAATGCCAAGAGTAACGGTTTT
CGTCCTTTGGCTTTGTCCCAGGGTCTTGCGATTCGAATCCAGCGACTGAA
ATACTCATTTCTTGCTAGAAAGGAAGAGAGAGCGGCAAGATTTGCAGCTG
TTTTGGCGATCAATGCACGGTGGTTGAGCGTGCGGGAGGAGGGCCCGAGA
CTTCAGCAAAGATGCTCATCTTCTCCCACTACAATTTTCGCAAGCGACTC
CTGGACAAGGCTCGCAATTACAAAGACACCAATGTGTTGATTGTGAACGA
GGCCTACACCAGCAAAACCTGCACCTGTTGTGGAACAATTCACAACAAGT
TTGGTGTCAACAAAACATTCGATTGTCG

Synonyms

Publications