EWM28723.1, cds1939 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28723.1 vs. NCBI_GenBank
Match: gi|585111146|gb|EWM28723.1| (Transposase IS605 family, OrfB [Nannochloropsis gaditana]) HSP 1 Score: 550.821 bits (1418), Expect = 0.000e+0 Identity = 268/268 (100.00%), Postives = 268/268 (100.00%), Query Frame = 0 Query: 1 MLIFSHYNFRKRLLDKARNYKDTNVLIVNEAYTSKTCTCCGTIHNKFGVNKTFDCRSGNAKSNGFRPLALSQGLAIRIQRLKYSFLARKEERAARFAAVLAINARWLSVREEGPRLQQSLRHPWARRSYGRPGRRSNQNFTQDSLLGAAIACRQFFFEDAAIDAITYNAMNIERPLAGLSEERIVSDRIARIYESFVFGSRDAEAEVESGLAHLFLVIALEVTLNFRYVTLSVKAGVERAPVYTDLVIALKLHSGLETRKSRPSSEEF 268 MLIFSHYNFRKRLLDKARNYKDTNVLIVNEAYTSKTCTCCGTIHNKFGVNKTFDCRSGNAKSNGFRPLALSQGLAIRIQRLKYSFLARKEERAARFAAVLAINARWLSVREEGPRLQQSLRHPWARRSYGRPGRRSNQNFTQDSLLGAAIACRQFFFEDAAIDAITYNAMNIERPLAGLSEERIVSDRIARIYESFVFGSRDAEAEVESGLAHLFLVIALEVTLNFRYVTLSVKAGVERAPVYTDLVIALKLHSGLETRKSRPSSEEF Sbjct: 1 MLIFSHYNFRKRLLDKARNYKDTNVLIVNEAYTSKTCTCCGTIHNKFGVNKTFDCRSGNAKSNGFRPLALSQGLAIRIQRLKYSFLARKEERAARFAAVLAINARWLSVREEGPRLQQSLRHPWARRSYGRPGRRSNQNFTQDSLLGAAIACRQFFFEDAAIDAITYNAMNIERPLAGLSEERIVSDRIARIYESFVFGSRDAEAEVESGLAHLFLVIALEVTLNFRYVTLSVKAGVERAPVYTDLVIALKLHSGLETRKSRPSSEEF 268
BLAST of EWM28723.1 vs. NCBI_GenBank
Match: gi|1094114106|ref|WP_071103605.1| (transposase [Moorea producens] >gi|1092221839|gb|AOY80181.1| transposase [Moorea producens JHB]) HSP 1 Score: 66.6254 bits (161), Expect = 5.638e-9 Identity = 30/55 (54.55%), Postives = 37/55 (67.27%), Query Frame = 0 Query: 1 MLIFSHYNFRKRLLDKARNYKDTNVLIVNEAYTSKTCTCCGTIHNKFGVNKTFDC 55 ML +SHY FR+ L+ A + D V++VNE+YTSKTC CG IH K G NK F C Sbjct: 280 MLTWSHYKFRQHLMQMA-DRNDVKVVLVNESYTSKTCPECGHIHEKLGGNKKFQC 333
BLAST of EWM28723.1 vs. NCBI_GenBank
Match: gi|1210127957|dbj|BAY47071.1| (transposase [Scytonema sp. HK-05]) HSP 1 Score: 65.4698 bits (158), Expect = 1.177e-8 Identity = 33/57 (57.89%), Postives = 40/57 (70.18%), Query Frame = 0 Query: 1 MLIFSHYNFRKRLLDKARNYKDTNVLIVNEAYTSKTCTCCGTIHNKFGVNKTFDCRS 57 ML +SHY F++ L KA+ +K T V+ V+EAYTSKTCT CG IH K G NK F C S Sbjct: 263 MLNWSHYRFKEYLKFKAQEWK-TQVIEVSEAYTSKTCTKCGHIHTKLGGNKKFKCPS 318
BLAST of EWM28723.1 vs. NCBI_GenBank
Match: gi|1121320201|ref|WP_073630340.1| (hypothetical protein [Scytonema sp. HK-05] >gi|1115295967|gb|OKH58964.1| hypothetical protein NIES2130_11670 [Scytonema sp. HK-05]) HSP 1 Score: 65.4698 bits (158), Expect = 1.183e-8 Identity = 33/57 (57.89%), Postives = 40/57 (70.18%), Query Frame = 0 Query: 1 MLIFSHYNFRKRLLDKARNYKDTNVLIVNEAYTSKTCTCCGTIHNKFGVNKTFDCRS 57 ML +SHY F++ L KA+ +K T V+ V+EAYTSKTCT CG IH K G NK F C S Sbjct: 291 MLNWSHYRFKEYLKFKAQEWK-TQVIEVSEAYTSKTCTKCGHIHTKLGGNKKFKCPS 346
BLAST of EWM28723.1 vs. NCBI_GenBank
Match: gi|1084332751|ref|WP_070396810.1| (transposase [Moorea producens] >gi|1082414847|gb|AOX04452.1| transposase [Moorea producens PAL-8-15-08-1]) HSP 1 Score: 63.929 bits (154), Expect = 3.554e-8 Identity = 28/55 (50.91%), Postives = 37/55 (67.27%), Query Frame = 0 Query: 1 MLIFSHYNFRKRLLDKARNYKDTNVLIVNEAYTSKTCTCCGTIHNKFGVNKTFDC 55 +L +SHY FR+ L+ A + D V++VNE+YTSKTC CG IH + G NK F C Sbjct: 272 LLTWSHYKFRQHLIQMADRH-DVKVILVNESYTSKTCPECGHIHERLGGNKKFQC 325
BLAST of EWM28723.1 vs. NCBI_GenBank
Match: gi|1132233664|ref|WP_075901832.1| (transposase [Moorea bouillonii] >gi|1130578815|gb|OLT61051.1| transposase [Moorea bouillonii PNG]) HSP 1 Score: 64.3142 bits (155), Expect = 3.586e-8 Identity = 28/55 (50.91%), Postives = 37/55 (67.27%), Query Frame = 0 Query: 1 MLIFSHYNFRKRLLDKARNYKDTNVLIVNEAYTSKTCTCCGTIHNKFGVNKTFDC 55 +L +SHY FR+ L+ A + D V++VNE+YTSKTC CG IH K G N+ F C Sbjct: 272 LLTWSHYKFRQHLIQMADRH-DVRVVLVNESYTSKTCPECGHIHEKLGGNRKFQC 325
BLAST of EWM28723.1 vs. NCBI_GenBank
Match: gi|1175818742|ref|YP_009352565.1| (ISSoc2, transposase [Kaumoebavirus] >gi|1166803086|gb|ARA71985.1| ISSoc2, transposase [Kaumoebavirus]) HSP 1 Score: 63.1586 bits (152), Expect = 7.465e-8 Identity = 35/75 (46.67%), Postives = 47/75 (62.67%), Query Frame = 0 Query: 3 IFSHYNFRKRLLDKARNYKDTNVLIVNEAYTSKTCTCCGTIHNKFGVNKTFDCRSG---NAKSNGFRPLALSQGL 74 I SHY FR RL++KA Y ++ V++V+EAYTSKTC CG I+ G +K F C G + NG R + L +GL Sbjct: 294 ILSHYTFRMRLIEKAEQY-NSEVIVVDEAYTSKTCGGCGKINENLGGSKIFTCSCGVNCDRDLNGARNIML-KGL 366
BLAST of EWM28723.1 vs. NCBI_GenBank
Match: gi|1145589289|gb|AQN68748.1| (putative transposase [Saudi moumouvirus]) HSP 1 Score: 58.5362 bits (140), Expect = 8.653e-8 Identity = 27/55 (49.09%), Postives = 35/55 (63.64%), Query Frame = 0 Query: 1 MLIFSHYNFRKRLLDKARNYKDTNVLIVNEAYTSKTCTCCGTIHNKFGVNKTFDC 55 ++ SH F +LL K++ Y +TNVLIV+E YTS TC CG H K G NK + C Sbjct: 5 IMTLSHNEFINKLLHKSKQY-NTNVLIVDEVYTSVTCGNCGIKHGKLGSNKIYKC 58
BLAST of EWM28723.1 vs. NCBI_GenBank
Match: gi|495452879|ref|WP_008177573.1| (transposase [Moorea producens] >gi|332356300|gb|EGJ35754.1| transposase, IS605 OrfB family, central region [Moorea producens 3L] >gi|1130583731|gb|OLT65966.1| transposase [Moorea producens PAL]) HSP 1 Score: 62.3882 bits (150), Expect = 1.454e-7 Identity = 29/55 (52.73%), Postives = 36/55 (65.45%), Query Frame = 0 Query: 1 MLIFSHYNFRKRLLDKARNYKDTNVLIVNEAYTSKTCTCCGTIHNKFGVNKTFDC 55 ML +SHY FR+ L A + D V++VNE+YTSKTC CG IH K G +K F C Sbjct: 272 MLTWSHYKFRQHLTQMADRH-DVLVVLVNESYTSKTCPECGQIHEKLGGSKKFQC 325
BLAST of EWM28723.1 vs. NCBI_GenBank
Match: gi|495466760|ref|WP_008191451.1| (transposase [Moorea producens] >gi|332349088|gb|EGJ28700.1| transposase, IS605 OrfB family, central region [Moorea producens 3L] >gi|1130581660|gb|OLT63895.1| transposase [Moorea producens PAL]) HSP 1 Score: 62.3882 bits (150), Expect = 1.605e-7 Identity = 28/55 (50.91%), Postives = 37/55 (67.27%), Query Frame = 0 Query: 1 MLIFSHYNFRKRLLDKARNYKDTNVLIVNEAYTSKTCTCCGTIHNKFGVNKTFDC 55 +L +SHY FR+ L+ A + V++VNE+YTSKTC CG IH+K G NK F C Sbjct: 272 LLNWSHYKFRQHLIQMADRH-GVKVVLVNESYTSKTCPKCGHIHDKLGGNKKFQC 325 The following BLAST results are available for this feature:
BLAST of EWM28723.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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