EWM28723.1, cds1939 (CDS) Nannochloropsis gaditana

Overview
NameEWM28723.1
Unique Namecds1939
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:531385..531551 -
Alignment locationCM002458.1:530935..531123 -
Alignment locationCM002458.1:530570..530757 -
Alignment locationCM002458.1:530226..530488 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28723.1
ProductTransposase IS605 family, OrfB
Orig transcript idgnl|cribi|Naga_100002g75.4842.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:531385..531551 -
CM002458.1supercontigCM002458.1:530935..531123 -
CM002458.1supercontigCM002458.1:530570..530757 -
CM002458.1supercontigCM002458.1:530226..530488 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR010095Transposase_IS605_OrfB_C
Homology
BLAST of EWM28723.1 vs. NCBI_GenBank
Match: gi|585111146|gb|EWM28723.1| (Transposase IS605 family, OrfB [Nannochloropsis gaditana])

HSP 1 Score: 550.821 bits (1418), Expect = 0.000e+0
Identity = 268/268 (100.00%), Postives = 268/268 (100.00%), Query Frame = 0
Query:    1 MLIFSHYNFRKRLLDKARNYKDTNVLIVNEAYTSKTCTCCGTIHNKFGVNKTFDCRSGNAKSNGFRPLALSQGLAIRIQRLKYSFLARKEERAARFAAVLAINARWLSVREEGPRLQQSLRHPWARRSYGRPGRRSNQNFTQDSLLGAAIACRQFFFEDAAIDAITYNAMNIERPLAGLSEERIVSDRIARIYESFVFGSRDAEAEVESGLAHLFLVIALEVTLNFRYVTLSVKAGVERAPVYTDLVIALKLHSGLETRKSRPSSEEF 268
            MLIFSHYNFRKRLLDKARNYKDTNVLIVNEAYTSKTCTCCGTIHNKFGVNKTFDCRSGNAKSNGFRPLALSQGLAIRIQRLKYSFLARKEERAARFAAVLAINARWLSVREEGPRLQQSLRHPWARRSYGRPGRRSNQNFTQDSLLGAAIACRQFFFEDAAIDAITYNAMNIERPLAGLSEERIVSDRIARIYESFVFGSRDAEAEVESGLAHLFLVIALEVTLNFRYVTLSVKAGVERAPVYTDLVIALKLHSGLETRKSRPSSEEF
Sbjct:    1 MLIFSHYNFRKRLLDKARNYKDTNVLIVNEAYTSKTCTCCGTIHNKFGVNKTFDCRSGNAKSNGFRPLALSQGLAIRIQRLKYSFLARKEERAARFAAVLAINARWLSVREEGPRLQQSLRHPWARRSYGRPGRRSNQNFTQDSLLGAAIACRQFFFEDAAIDAITYNAMNIERPLAGLSEERIVSDRIARIYESFVFGSRDAEAEVESGLAHLFLVIALEVTLNFRYVTLSVKAGVERAPVYTDLVIALKLHSGLETRKSRPSSEEF 268          
BLAST of EWM28723.1 vs. NCBI_GenBank
Match: gi|1094114106|ref|WP_071103605.1| (transposase [Moorea producens] >gi|1092221839|gb|AOY80181.1| transposase [Moorea producens JHB])

HSP 1 Score: 66.6254 bits (161), Expect = 5.638e-9
Identity = 30/55 (54.55%), Postives = 37/55 (67.27%), Query Frame = 0
Query:    1 MLIFSHYNFRKRLLDKARNYKDTNVLIVNEAYTSKTCTCCGTIHNKFGVNKTFDC 55
            ML +SHY FR+ L+  A +  D  V++VNE+YTSKTC  CG IH K G NK F C
Sbjct:  280 MLTWSHYKFRQHLMQMA-DRNDVKVVLVNESYTSKTCPECGHIHEKLGGNKKFQC 333          
BLAST of EWM28723.1 vs. NCBI_GenBank
Match: gi|1210127957|dbj|BAY47071.1| (transposase [Scytonema sp. HK-05])

HSP 1 Score: 65.4698 bits (158), Expect = 1.177e-8
Identity = 33/57 (57.89%), Postives = 40/57 (70.18%), Query Frame = 0
Query:    1 MLIFSHYNFRKRLLDKARNYKDTNVLIVNEAYTSKTCTCCGTIHNKFGVNKTFDCRS 57
            ML +SHY F++ L  KA+ +K T V+ V+EAYTSKTCT CG IH K G NK F C S
Sbjct:  263 MLNWSHYRFKEYLKFKAQEWK-TQVIEVSEAYTSKTCTKCGHIHTKLGGNKKFKCPS 318          
BLAST of EWM28723.1 vs. NCBI_GenBank
Match: gi|1121320201|ref|WP_073630340.1| (hypothetical protein [Scytonema sp. HK-05] >gi|1115295967|gb|OKH58964.1| hypothetical protein NIES2130_11670 [Scytonema sp. HK-05])

HSP 1 Score: 65.4698 bits (158), Expect = 1.183e-8
Identity = 33/57 (57.89%), Postives = 40/57 (70.18%), Query Frame = 0
Query:    1 MLIFSHYNFRKRLLDKARNYKDTNVLIVNEAYTSKTCTCCGTIHNKFGVNKTFDCRS 57
            ML +SHY F++ L  KA+ +K T V+ V+EAYTSKTCT CG IH K G NK F C S
Sbjct:  291 MLNWSHYRFKEYLKFKAQEWK-TQVIEVSEAYTSKTCTKCGHIHTKLGGNKKFKCPS 346          
BLAST of EWM28723.1 vs. NCBI_GenBank
Match: gi|1084332751|ref|WP_070396810.1| (transposase [Moorea producens] >gi|1082414847|gb|AOX04452.1| transposase [Moorea producens PAL-8-15-08-1])

HSP 1 Score: 63.929 bits (154), Expect = 3.554e-8
Identity = 28/55 (50.91%), Postives = 37/55 (67.27%), Query Frame = 0
Query:    1 MLIFSHYNFRKRLLDKARNYKDTNVLIVNEAYTSKTCTCCGTIHNKFGVNKTFDC 55
            +L +SHY FR+ L+  A  + D  V++VNE+YTSKTC  CG IH + G NK F C
Sbjct:  272 LLTWSHYKFRQHLIQMADRH-DVKVILVNESYTSKTCPECGHIHERLGGNKKFQC 325          
BLAST of EWM28723.1 vs. NCBI_GenBank
Match: gi|1132233664|ref|WP_075901832.1| (transposase [Moorea bouillonii] >gi|1130578815|gb|OLT61051.1| transposase [Moorea bouillonii PNG])

HSP 1 Score: 64.3142 bits (155), Expect = 3.586e-8
Identity = 28/55 (50.91%), Postives = 37/55 (67.27%), Query Frame = 0
Query:    1 MLIFSHYNFRKRLLDKARNYKDTNVLIVNEAYTSKTCTCCGTIHNKFGVNKTFDC 55
            +L +SHY FR+ L+  A  + D  V++VNE+YTSKTC  CG IH K G N+ F C
Sbjct:  272 LLTWSHYKFRQHLIQMADRH-DVRVVLVNESYTSKTCPECGHIHEKLGGNRKFQC 325          
BLAST of EWM28723.1 vs. NCBI_GenBank
Match: gi|1175818742|ref|YP_009352565.1| (ISSoc2, transposase [Kaumoebavirus] >gi|1166803086|gb|ARA71985.1| ISSoc2, transposase [Kaumoebavirus])

HSP 1 Score: 63.1586 bits (152), Expect = 7.465e-8
Identity = 35/75 (46.67%), Postives = 47/75 (62.67%), Query Frame = 0
Query:    3 IFSHYNFRKRLLDKARNYKDTNVLIVNEAYTSKTCTCCGTIHNKFGVNKTFDCRSG---NAKSNGFRPLALSQGL 74
            I SHY FR RL++KA  Y ++ V++V+EAYTSKTC  CG I+   G +K F C  G   +   NG R + L +GL
Sbjct:  294 ILSHYTFRMRLIEKAEQY-NSEVIVVDEAYTSKTCGGCGKINENLGGSKIFTCSCGVNCDRDLNGARNIML-KGL 366          
BLAST of EWM28723.1 vs. NCBI_GenBank
Match: gi|1145589289|gb|AQN68748.1| (putative transposase [Saudi moumouvirus])

HSP 1 Score: 58.5362 bits (140), Expect = 8.653e-8
Identity = 27/55 (49.09%), Postives = 35/55 (63.64%), Query Frame = 0
Query:    1 MLIFSHYNFRKRLLDKARNYKDTNVLIVNEAYTSKTCTCCGTIHNKFGVNKTFDC 55
            ++  SH  F  +LL K++ Y +TNVLIV+E YTS TC  CG  H K G NK + C
Sbjct:    5 IMTLSHNEFINKLLHKSKQY-NTNVLIVDEVYTSVTCGNCGIKHGKLGSNKIYKC 58          
BLAST of EWM28723.1 vs. NCBI_GenBank
Match: gi|495452879|ref|WP_008177573.1| (transposase [Moorea producens] >gi|332356300|gb|EGJ35754.1| transposase, IS605 OrfB family, central region [Moorea producens 3L] >gi|1130583731|gb|OLT65966.1| transposase [Moorea producens PAL])

HSP 1 Score: 62.3882 bits (150), Expect = 1.454e-7
Identity = 29/55 (52.73%), Postives = 36/55 (65.45%), Query Frame = 0
Query:    1 MLIFSHYNFRKRLLDKARNYKDTNVLIVNEAYTSKTCTCCGTIHNKFGVNKTFDC 55
            ML +SHY FR+ L   A  + D  V++VNE+YTSKTC  CG IH K G +K F C
Sbjct:  272 MLTWSHYKFRQHLTQMADRH-DVLVVLVNESYTSKTCPECGQIHEKLGGSKKFQC 325          
BLAST of EWM28723.1 vs. NCBI_GenBank
Match: gi|495466760|ref|WP_008191451.1| (transposase [Moorea producens] >gi|332349088|gb|EGJ28700.1| transposase, IS605 OrfB family, central region [Moorea producens 3L] >gi|1130581660|gb|OLT63895.1| transposase [Moorea producens PAL])

HSP 1 Score: 62.3882 bits (150), Expect = 1.605e-7
Identity = 28/55 (50.91%), Postives = 37/55 (67.27%), Query Frame = 0
Query:    1 MLIFSHYNFRKRLLDKARNYKDTNVLIVNEAYTSKTCTCCGTIHNKFGVNKTFDC 55
            +L +SHY FR+ L+  A  +    V++VNE+YTSKTC  CG IH+K G NK F C
Sbjct:  272 LLNWSHYKFRQHLIQMADRH-GVKVVLVNESYTSKTCPKCGHIHDKLGGNKKFQC 325          
The following BLAST results are available for this feature:
BLAST of EWM28723.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111146|gb|EWM28723.1|0.000e+0100.00Transposase IS605 family, OrfB [Nannochloropsis ga... [more]
gi|1094114106|ref|WP_071103605.1|5.638e-954.55transposase [Moorea producens] >gi|1092221839|gb|A... [more]
gi|1210127957|dbj|BAY47071.1|1.177e-857.89transposase [Scytonema sp. HK-05][more]
gi|1121320201|ref|WP_073630340.1|1.183e-857.89hypothetical protein [Scytonema sp. HK-05] >gi|111... [more]
gi|1084332751|ref|WP_070396810.1|3.554e-850.91transposase [Moorea producens] >gi|1082414847|gb|A... [more]
gi|1132233664|ref|WP_075901832.1|3.586e-850.91transposase [Moorea bouillonii] >gi|1130578815|gb|... [more]
gi|1175818742|ref|YP_009352565.1|7.465e-846.67ISSoc2, transposase [Kaumoebavirus] >gi|1166803086... [more]
gi|1145589289|gb|AQN68748.1|8.653e-849.09putative transposase [Saudi moumouvirus][more]
gi|495452879|ref|WP_008177573.1|1.454e-752.73transposase [Moorea producens] >gi|332356300|gb|EG... [more]
gi|495466760|ref|WP_008191451.1|1.605e-750.91transposase [Moorea producens] >gi|332349088|gb|EG... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1944rna1944Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications