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Properties
| Property Name | Value |
|---|
| Product | qb- vti1-family |
| Orig transcript id | gnl|cribi|Naga_100002g76.4908.mrna |
| Orig protein id | gnl|cribi|Naga_100002g76.4908 |
| Gene | SNR17 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002458.1 | supercontig | CM002458.1:528656..530106 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna1943 ID=rna1943|Name=rna1943|organism=Nannochloropsis gaditana|type=mRNA|length=3012bp
ATGTTTCTTTCCTCAAAAAATCAGATTTATTCAATTTCTGCAGGGCTGAA
AGACACAGACAGGCAGGGGCAAGCGCAGACTCCTGGGTTTGACTTTACAA
GGTCATCAAAGCGAAAAAGAAGGATCTGTTTGGGGAAGCATTATAATTGG
TCTACTGATTTATGTGATGACTTGGCCTGCGCTTCCAGTGCCGACATTCC
ATCTCGGCACATTAGTGTTCGTGATTTCGTACAGCGAAGGATGGCAGAAA
GGGATATACGTGCCCTGACATCTTCCATGAAGGGTGTCTTCTCCCGGCGG
GCTTCGGGGGGCGATGCTCTAGGTCAAGTGAGCGCCACGAGCGGAGGCAT
CCGTGAGGACAGCACCGCTGAACAGAAGGACAAAGCGGCGGACATTGTGG
TTGCAGGGAGACAAAAAGGAAGTCACGAGGAAGACTCTTTATGCGTGGCG
GATGGCGACACGCTGAAAACTCTTTCTGTAGGGGTGGCGGCGGCACAAAC
CCCTCTAACCGGTACCCTCATGCCTGTCTGTCAAGCCCCTTCGAGCTCCA
GCAAAACAGCGGCAGAAAGCGAGGAAATGTCTTCGTTGGGTGCGGAGTGC
GAGTCTGAGACGGATTTGGCGACAGCTGGAATCCTCGATAGAAAGTATTC
TGATACAAAGCCGCCAGAGGGAAAGGCTCAGGGGGCAGAGGAAGGAGCCG
GAGAGCCCCTTTCCTCACAGCCGGAACCGGAACCATCGGCAGCACCGGCT
CCACATTCGGAATGCCAGGATGCAGAAGCCGTACAGTTGATAGGGAAGGC
AGAGGTGGTGGTAGATAGGGAGGGTGAACGGCTGGCAAGTCTGGTTGGCG
TTGGGGGGGAGCAGGTGGTGAGGAGCCTGGAGAAGTCCGCTTCCTTTCTA
GCAGCAGCAGCAGGAGGAGCGGCGGCGTCCCTTACATCTTTGATTGTCTC
CTCGCCCAGTAACCGGCCCACCCGACGGGCCATGTCCGCAACGGCGGAAG
AGAGGAAGCCGAGTAGTGCTCAGAGGAAGACGAGGATCAGCGAGGCGGAT
GGAGGGCGGCATGGATCAAGCGCAGATGGGGCAGAGGAAGCCAGTCAACC
CCTGGACGGCGCCACCCTGAGCAAATACGATGGATCTGAGACGTTGTCAC
GAAACCATCCTGTCTTCGAGATGATCCGGCAGCGCTCGCACCTGAGTAGA
GCAAGCAGCGAGGCCGGCGAGTCACGGAGGGAGAGCAACCCCACCCCCGA
GGCATCGGCCTCTTCCTTCTCCACGTCCTCACCAGCTCTCATCCATTCGT
CCTTCACTGAAGCCTCGTGTGCGAGCGGTGGACAGGAGTGTCCCCCGAGA
TCGAACCTTCAGGAGCCGGCTACGGGCACGTGGAAAGCCCGTGGGAAGGA
GGAAGGAGGGCCTCAGGAGCTGTCCTCGCCGTTCACGACCCGGAGAAAGA
CAGACTACCAGTACGACTATGTGGATAAGTTGATCTTGAAATTCACAACC
TATTCTCAAGACAAGGAACACTCTGCGTTCGTTATCGGGAAGGGGGGTGG
GAGCATTGGCCGGGACGTCAAGAACACGGTGTCGGTGCCCTCGGACAGCA
CGCTTCAGGAGGATAGCCACGCCTTTATCGGCTTCAAGGCGGGTAGTTTC
TATATCAAAAACCTTGGTGTCACTCATTGCGCCGCAATCCGAGTCGGGGC
GGAGCCCGTGGTGCGGGATTGGCCTTTGGTCCGAGGGGCCACTTTTTCAG
CGGGAAACTCCATCTTCTTGGTCGTGGAGATCACGCCGACGGAGATGGTC
GCCGAGGTAATCGATGGTCCTCTAAAAGGTGAGCGACTCGAAGTGAGTCA
GAAGGGAGCCACGCTGGGTAGATCTCCAGATAACACACTCAGTATCGCGG
ACCCTGAACTCTCACGTCGCCATTCGAGGATCGAGTATGAGGAAAAAGAC
GGCAAGTACTATCTATCAGACGTGGGCTCCACAAACGGTACCTACATGCA
GCTGGCTGGCCCGTACGCCAAAGCCTACAACCTTTCACTCGGCGATGAAA
TTATGGTTGGACGCACAGGCTTTTCGATCAACCGCTACGATTATGGGATA
AGCGAAGAGCGGGGAAGACGCAAAACAATGGAGGACCACACACTTGTCAT
ACAAGATCTTGGCGTGCGAGCCTTAAAACGATTTGGTTTAGCTCCCCAGA
CCTTCGCAGCCGTGTTTGACGGACACGGGGGGGAGGAGGCATCTGCGTAT
TTGGCCTGTCATTTGCACGTGAATCTGCGCGAGGAGCTGGAACGCCGTTT
CGGGGCAATTGAAGGAGACGGAAGGATTGAGTCACAGGAGTTGGACGCAA
TAGTTAAAGGGGTTGTCCTAGAAGCATTTGACAAGACAGACCAAGATTTT
TTGGGGAGATCGAATGTGGATGCTGGCAGCACGGCAACTACTGTGCTCAT
CATGGGGCGGCGAGTCTACTCCTGCAACGTGGGGGATTCGCGGACCATCA
TTTGTCGCGACCAAAAGCTTTTACTTTGTTCTAATGACCACAAGCCCGCA
CGGGTGGACGAAGCGAGGCGGATACGACAGGCGGGAGGATTCATATTCCA
AAATCGTGTCATGGGGGAGCTAGCCGTCTCGCGAGCTTTTGGCGACCGCG
AGCTGAAGAAATGCATGCAGGAGATCATGGCCCCTGACGAGTTAGAGCAG
ATGAGCCTTCGCGATGCCAGAAGTGACGGAGACGAAGCCTTGGTAAAAGA
CTACTCGCAACCTCTTGTAATCGCCCGACCGGAAATTCTGATAACGGAGC
TGAGCGAGCGAGACGACTTCGTCTTGTTGGCATGCGATGGCCTGTTTGAC
GTTTTTCCAAACTCTGAAGTGATACGCTTTATACTCGAGGATATGAAACA
GCATCACGATGCTCAACGTGCATGTGAGAACATTTCATATACTGCCATCC
ACCAGCGTATCGCTCATGATAATGTAAGCATCGTTTTGCTTGTCACCAAC
AACTGGTGGTAA back to topprotein sequence of rna1943 >rna1943-protein ID=rna1943-protein|Name=rna1943|organism=Nannochloropsis gaditana|type=polypeptide|length=225bp
MQEEYYRLSRAINRGLNELTRGRLDGGGSISGGHDTMPPSRLLRLVAEID
LDLAEAEGQVKGLEIEVQDMPVKDKRMCREKVLQFRNDLKAMRRSFEAAK
ARAERHMLLQLSQVSGKRKNIAERLMSSTEQLHDARKVVDETEHIGEGII
YQMEAQREQLVRASEQVQETNWFTRSARQVMNNMHLRAVRHKACLILIIG
FLLVLIGIVFNYGVLARYHKKNREQ back to topmRNA from alignment at CM002458.1:528656..530106+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna1943 ID=rna1943|Name=rna1943|organism=Nannochloropsis gaditana|type=mRNA|length=1451bp|location=Sequence derived from alignment at CM002458.1:528656..530106+ (Nannochloropsis gaditana)
ATGCAAGAGGAGTATTATCGCCTGAGTCGCGCGATTAACAGGGGCCTGAA
CGAGCTGACAAGAGGGCGtttggatggaggagggagcattTCCGGAGGCC
ATGACACGATGCCTCCGTCAAGACTTTTGCGCCTGGTTGCAGAGATAGAC
TTGGACCTTGCCGAGGCGGAAGGGCAGGTAAAAGTTGTAGTGCATTTCGT
AGGAGGTACCATGTTGAAATGATGGACCTATTTCAACGCATCTATTGCTT
TCACGCACCGTTTTAGGTGAAAGGTTTGGAAATTGAGGTGCAAGATATGC
CCGTGAAGGACAAGAGGATGTGTCGAGAGAAGGTAATGGATGCGTGCATC
agtaggaggaggaaaggcaacaTAAGAGGAGGGTTTGGGAAGGCCCTGGG
TCTGTCGCTCCGACGCCTCTTTGTTCTCTTGTTAGTGGCCATGTAGAGTG
TACTGTCTTCAACATGTACTTAAGTGCATGACATCTGTTTCGCAACTTGT
TTGTGACTTTCGTGTTGTAGGTGTTGCAATTTCGCAATGACTTGAAGGCA
ATGCGGCGCAGCTTCGAGGCTGCCAAGGCCCGGGCCGAAAGACATATGTT
GTTGCAGCTGAGCCAAGTCAGCGGCAAAAGAAAGAATATCGCAGAGCGTC
TCATGAGGTACGTAGCTACAACGACATCATTGATGGCGAATGGGATGGGT
GGCGAAGCTTAAATTTATATTCGTTCATCACGCCAGTTCTACAGAGCAGT
TGCATGATGCAAGAAAGGTTGTGGATGAAACGGAGCACATTGGTAAGTGA
TTTCAGCAGTGCAGAGAGGAAGCGCGCGGGTTTCACTTCCGAACACGACC
GTGCCCAACCAGGTGAAGGAATCATTTATCAGATGGAGGCGCAACGAGAA
CAGCTTGTACGAGCTTCCGAGCAGGTGAACAACTCCTAGGAGATATGTGC
CCATAATTAGACTATTCCTGCACAGCTTTGACTTCATTTCTTATGCTCTA
CAGGTGCAAGAGACCAACTGGTTCACGCGATCGGCACGCCAAGTCATGAA
TAACATGCATTTACGAGCGGTTCGACATAAAGCCTGTCTCATCCTTATCA
TCGGTTTTCTCCTCGTGCTTATCGGGATTGTGTTCAATTACGGTGTTCTG
GCAAGGTATCATAAGAAAAATAGAGAACAATAAAAGATGGAAACTATAAC
GTGTACATTATCGTGCTTATTGAGTGATGATGATATCGATGCGAATTACA
AAAGCATCAATAAGTGTATAGTTGAACATAATAGAGAGCTCCCGAAAGAT
CCTAGCACAAAGAAAATGTCTCAATTAATGGTGAAGGTTTTTATGTCGAA
ACTCAAAGGAACACATACAAAAGGATCTATTTCTCAAGCCACACGATCTA
GTGCGGTGCTCATGGAGAACGCAATTTACTTGGGCGTCGCGAATTCATTC
C back to topCoding sequence (CDS) from alignment at CM002458.1:528656..530106+ >rna1943 ID=rna1943|Name=rna1943|organism=Nannochloropsis gaditana|type=CDS|length=4068bp|location=Sequence derived from alignment at CM002458.1:528656..530106+ (Nannochloropsis gaditana)
ATGCAAGAGGAGTATTATCGCCTGAGTCGCGCGATTAACAGGGGCCTGAA
CGAGCTGACAAGAGGGCGtttggatggaggagggagcattTCCGGAGGCC
ATGACACGATGCCTCCGTCAAGACTTTTGCGCCTGGTTGCAGAGATAGAC
TTGGACCTTGCCGAGGCGGAAGGGCAGGTGAAAGGTTTGGAAATTGAGGT
GCAAGATATGCCCGTGAAGGACAAGAGGATGTGTCGAGAGAAGGTGTTGC
AATTTCGCAATGACTTGAAGGCAATGCGGCGCAGCTTCGAGGCTGCCAAG
GCCCGGGCCGAAAGACATATGTTGTTGCAGCTGAGCCAAGTCAGCGGCAA
AAGAAAGAATATCGCAGAGCGTCTCATGAGTTCTACAGAGCAGTTGCATG
ATGCAAGAAAGGTTGTGGATGAAACGGAGCACATTGGTGAAGGAATCATT
TATCAGATGGAGGCGCAACGAGAACAGCTTGTACGAGCTTCCGAGCAGGT
GCAAGAGACCAACTGGTTCACGCGATCGGCACGCCAAGTCATGAATAACA
TGCATTTACGAGCGGTTCGACATAAAGCCTGTCTCATCCTTATCATCGGT
TTTCTCCTCGTGCTTATCGGGATTGTGTTCAATTACGGTGTTCTGGCAAG
GTATCATAAGAAAAATAGAGAACAATAAATGCAAGAGGAGTATTATCGCC
TGAGTCGCGCGATTAACAGGGGCCTGAACGAGCTGACAAGAGGGCGtttg
gatggaggagggagcattTCCGGAGGCCATGACACGATGCCTCCGTCAAG
ACTTTTGCGCCTGGTTGCAGAGATAGACTTGGACCTTGCCGAGGCGGAAG
GGCAGGTGAAAGGTTTGGAAATTGAGGTGCAAGATATGCCCGTGAAGGAC
AAGAGGATGTGTCGAGAGAAGGTGTTGCAATTTCGCAATGACTTGAAGGC
AATGCGGCGCAGCTTCGAGGCTGCCAAGGCCCGGGCCGAAAGACATATGT
TGTTGCAGCTGAGCCAAGTCAGCGGCAAAAGAAAGAATATCGCAGAGCGT
CTCATGAGTTCTACAGAGCAGTTGCATGATGCAAGAAAGGTTGTGGATGA
AACGGAGCACATTGGTGAAGGAATCATTTATCAGATGGAGGCGCAACGAG
AACAGCTTGTACGAGCTTCCGAGCAGGTGCAAGAGACCAACTGGTTCACG
CGATCGGCACGCCAAGTCATGAATAACATGCATTTACGAGCGGTTCGACA
TAAAGCCTGTCTCATCCTTATCATCGGTTTTCTCCTCGTGCTTATCGGGA
TTGTGTTCAATTACGGTGTTCTGGCAAGGTATCATAAGAAAAATAGAGAA
CAATAAATGCAAGAGGAGTATTATCGCCTGAGTCGCGCGATTAACAGGGG
CCTGAACGAGCTGACAAGAGGGCGtttggatggaggagggagcattTCCG
GAGGCCATGACACGATGCCTCCGTCAAGACTTTTGCGCCTGGTTGCAGAG
ATAGACTTGGACCTTGCCGAGGCGGAAGGGCAGGTGAAAGGTTTGGAAAT
TGAGGTGCAAGATATGCCCGTGAAGGACAAGAGGATGTGTCGAGAGAAGG
TGTTGCAATTTCGCAATGACTTGAAGGCAATGCGGCGCAGCTTCGAGGCT
GCCAAGGCCCGGGCCGAAAGACATATGTTGTTGCAGCTGAGCCAAGTCAG
CGGCAAAAGAAAGAATATCGCAGAGCGTCTCATGAGTTCTACAGAGCAGT
TGCATGATGCAAGAAAGGTTGTGGATGAAACGGAGCACATTGGTGAAGGA
ATCATTTATCAGATGGAGGCGCAACGAGAACAGCTTGTACGAGCTTCCGA
GCAGGTGCAAGAGACCAACTGGTTCACGCGATCGGCACGCCAAGTCATGA
ATAACATGCATTTACGAGCGGTTCGACATAAAGCCTGTCTCATCCTTATC
ATCGGTTTTCTCCTCGTGCTTATCGGGATTGTGTTCAATTACGGTGTTCT
GGCAAGGTATCATAAGAAAAATAGAGAACAATAAATGCAAGAGGAGTATT
ATCGCCTGAGTCGCGCGATTAACAGGGGCCTGAACGAGCTGACAAGAGGG
CGtttggatggaggagggagcattTCCGGAGGCCATGACACGATGCCTCC
GTCAAGACTTTTGCGCCTGGTTGCAGAGATAGACTTGGACCTTGCCGAGG
CGGAAGGGCAGGTGAAAGGTTTGGAAATTGAGGTGCAAGATATGCCCGTG
AAGGACAAGAGGATGTGTCGAGAGAAGGTGTTGCAATTTCGCAATGACTT
GAAGGCAATGCGGCGCAGCTTCGAGGCTGCCAAGGCCCGGGCCGAAAGAC
ATATGTTGTTGCAGCTGAGCCAAGTCAGCGGCAAAAGAAAGAATATCGCA
GAGCGTCTCATGAGTTCTACAGAGCAGTTGCATGATGCAAGAAAGGTTGT
GGATGAAACGGAGCACATTGGTGAAGGAATCATTTATCAGATGGAGGCGC
AACGAGAACAGCTTGTACGAGCTTCCGAGCAGGTGCAAGAGACCAACTGG
TTCACGCGATCGGCACGCCAAGTCATGAATAACATGCATTTACGAGCGGT
TCGACATAAAGCCTGTCTCATCCTTATCATCGGTTTTCTCCTCGTGCTTA
TCGGGATTGTGTTCAATTACGGTGTTCTGGCAAGGTATCATAAGAAAAAT
AGAGAACAATAAATGCAAGAGGAGTATTATCGCCTGAGTCGCGCGATTAA
CAGGGGCCTGAACGAGCTGACAAGAGGGCGtttggatggaggagggagca
ttTCCGGAGGCCATGACACGATGCCTCCGTCAAGACTTTTGCGCCTGGTT
GCAGAGATAGACTTGGACCTTGCCGAGGCGGAAGGGCAGGTGAAAGGTTT
GGAAATTGAGGTGCAAGATATGCCCGTGAAGGACAAGAGGATGTGTCGAG
AGAAGGTGTTGCAATTTCGCAATGACTTGAAGGCAATGCGGCGCAGCTTC
GAGGCTGCCAAGGCCCGGGCCGAAAGACATATGTTGTTGCAGCTGAGCCA
AGTCAGCGGCAAAAGAAAGAATATCGCAGAGCGTCTCATGAGTTCTACAG
AGCAGTTGCATGATGCAAGAAAGGTTGTGGATGAAACGGAGCACATTGGT
GAAGGAATCATTTATCAGATGGAGGCGCAACGAGAACAGCTTGTACGAGC
TTCCGAGCAGGTGCAAGAGACCAACTGGTTCACGCGATCGGCACGCCAAG
TCATGAATAACATGCATTTACGAGCGGTTCGACATAAAGCCTGTCTCATC
CTTATCATCGGTTTTCTCCTCGTGCTTATCGGGATTGTGTTCAATTACGG
TGTTCTGGCAAGGTATCATAAGAAAAATAGAGAACAATAAATGCAAGAGG
AGTATTATCGCCTGAGTCGCGCGATTAACAGGGGCCTGAACGAGCTGACA
AGAGGGCGtttggatggaggagggagcattTCCGGAGGCCATGACACGAT
GCCTCCGTCAAGACTTTTGCGCCTGGTTGCAGAGATAGACTTGGACCTTG
CCGAGGCGGAAGGGCAGGTGAAAGGTTTGGAAATTGAGGTGCAAGATATG
CCCGTGAAGGACAAGAGGATGTGTCGAGAGAAGGTGTTGCAATTTCGCAA
TGACTTGAAGGCAATGCGGCGCAGCTTCGAGGCTGCCAAGGCCCGGGCCG
AAAGACATATGTTGTTGCAGCTGAGCCAAGTCAGCGGCAAAAGAAAGAAT
ATCGCAGAGCGTCTCATGAGTTCTACAGAGCAGTTGCATGATGCAAGAAA
GGTTGTGGATGAAACGGAGCACATTGGTGAAGGAATCATTTATCAGATGG
AGGCGCAACGAGAACAGCTTGTACGAGCTTCCGAGCAGGTGCAAGAGACC
AACTGGTTCACGCGATCGGCACGCCAAGTCATGAATAACATGCATTTACG
AGCGGTTCGACATAAAGCCTGTCTCATCCTTATCATCGGTTTTCTCCTCG
TGCTTATCGGGATTGTGTTCAATTACGGTGTTCTGGCAAGGTATCATAAG
AAAAATAGAGAACAATAA back to top
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