EWM28789.1, cds1938 (CDS) Nannochloropsis gaditana

Overview
NameEWM28789.1
Unique Namecds1938
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:528656..528832 +
Alignment locationCM002458.1:528922..528987 +
Alignment locationCM002458.1:529176..529312 +
Alignment locationCM002458.1:529392..529447 +
Alignment locationCM002458.1:529518..529579 +
Alignment locationCM002458.1:529659..529838 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28789.1
Productqb- vti1-family
Orig transcript idgnl|cribi|Naga_100002g76.4908.mrna
GeneSNR17
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:528656..528832 +
CM002458.1supercontigCM002458.1:528922..528987 +
CM002458.1supercontigCM002458.1:529176..529312 +
CM002458.1supercontigCM002458.1:529392..529447 +
CM002458.1supercontigCM002458.1:529518..529579 +
CM002458.1supercontigCM002458.1:529659..529838 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0016043cellular component organization
GO:0016192vesicle-mediated transport
GO:0006810transport
GO:0006886intracellular protein transport
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0005484SNAP receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0005794Golgi apparatus
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR010989t-SNARE
IPR027027GOSR2/Membrin/Bos1
IPR007705Vesicle_trsprt_v-SNARE_N
Homology
BLAST of EWM28789.1 vs. NCBI_GenBank
Match: gi|585111212|gb|EWM28789.1| (qb- vti1-family [Nannochloropsis gaditana])

HSP 1 Score: 460.685 bits (1184), Expect = 4.578e-164
Identity = 225/225 (100.00%), Postives = 225/225 (100.00%), Query Frame = 0
Query:    1 MQEEYYRLSRAINRGLNELTRGRLDGGGSISGGHDTMPPSRLLRLVAEIDLDLAEAEGQVKGLEIEVQDMPVKDKRMCREKVLQFRNDLKAMRRSFEAAKARAERHMLLQLSQVSGKRKNIAERLMSSTEQLHDARKVVDETEHIGEGIIYQMEAQREQLVRASEQVQETNWFTRSARQVMNNMHLRAVRHKACLILIIGFLLVLIGIVFNYGVLARYHKKNREQ 225
            MQEEYYRLSRAINRGLNELTRGRLDGGGSISGGHDTMPPSRLLRLVAEIDLDLAEAEGQVKGLEIEVQDMPVKDKRMCREKVLQFRNDLKAMRRSFEAAKARAERHMLLQLSQVSGKRKNIAERLMSSTEQLHDARKVVDETEHIGEGIIYQMEAQREQLVRASEQVQETNWFTRSARQVMNNMHLRAVRHKACLILIIGFLLVLIGIVFNYGVLARYHKKNREQ
Sbjct:    1 MQEEYYRLSRAINRGLNELTRGRLDGGGSISGGHDTMPPSRLLRLVAEIDLDLAEAEGQVKGLEIEVQDMPVKDKRMCREKVLQFRNDLKAMRRSFEAAKARAERHMLLQLSQVSGKRKNIAERLMSSTEQLHDARKVVDETEHIGEGIIYQMEAQREQLVRASEQVQETNWFTRSARQVMNNMHLRAVRHKACLILIIGFLLVLIGIVFNYGVLARYHKKNREQ 225          
BLAST of EWM28789.1 vs. NCBI_GenBank
Match: gi|299471333|emb|CBN79289.1| (Soluble NSF Attachment Protein (SNAP) Receptor (SNARE) [Ectocarpus siliculosus])

HSP 1 Score: 107.842 bits (268), Expect = 3.838e-25
Identity = 75/228 (32.89%), Postives = 115/228 (50.44%), Query Frame = 0
Query:    2 QEEYYRLSRAINRGLNELTRGRL-DGGGSISGGHDTMPPSRLLRLVAEIDLDLAEAEGQVKGLEIEVQDMPVKDKRMCREKVLQFRNDLKAMRRSFEAAKARAERHMLLQLSQVSGKR---KNIAER---------------LMSSTEQLHDARKVVDETEHIGEGIIYQMEAQREQLVRASEQVQETNWFTRSARQVMNNMHLRAVRHKACLILIIGFLLVLIGIVF 210
            +E Y+R S +INR +N +    L D  G+ S                 + LDL EAE  VKG+EIEV+ M   ++R C+ +  Q R DLKA+RRS + A  RA+   L++ S         +N +E                L  S   L D+R+V++ETE IG G++  +E+QRE L+R+   V++T      AR+++ ++  R +RH+ CL  +I  L   I  V 
Sbjct:   21 EESYHRCSMSINRAINGIQLNNLVDAVGATS-----------------LPLDLQEAEQHVKGMEIEVRSMKGNERRQCQSRANQCRADLKALRRSIDQAGQRAQAEELMRRSGGGAIGGGPRNFSESGGDLGGLGPDLAQQSLARSRLSLQDSRRVLEETEGIGRGVMGDLESQRESLLRSRTSVRDTGAAAGQARRLLGSISRRELRHRLCLYAVIALLSAAIVFVL 231          
BLAST of EWM28789.1 vs. NCBI_GenBank
Match: gi|1004141324|gb|KXZ49317.1| (hypothetical protein GPECTOR_22g911 [Gonium pectorale])

HSP 1 Score: 72.0182 bits (175), Expect = 8.386e-12
Identity = 46/182 (25.27%), Postives = 99/182 (54.40%), Query Frame = 0
Query:   46 VAEIDLDLAEAEGQVKGLEIEVQDMPVKDKRMCREKVLQFRNDLKAMRRSFEAAK--------ARAERHMLLQLSQVSGKRKNIAERLMSST-------EQLHDARKVVDETEHIGEGIIYQMEAQREQLVRASEQVQETNWFTRSARQVMNNMHLRAVRHKACLILIIGFLLVLIGIVFNY 212
            ++E+D+D+ EA+  +K +++E + +  +  R  + KV +++ DL +++     A+        ARAE  + +  +  S  ++   +R++S T       E+L   +K++ ETE +G GI+  + AQRE ++ + + +   +     AR++++NM    +++K  LI +I FLL  I ++  +
Sbjct:   41 LSEVDVDIREADNIIKKMDMEARSVAPERSRNLQNKVKEYKADLASLKEQLTKARSTAGDFESARAELGLGMDYASSSQAQR---DRMLSGTAKLEQSNERLQTGKKLLAETEELGTGILANLAAQRETIIHSRDTLHGADDNISKARKILSNMSRVMLQNKLILIGVIAFLLTAIILIIYF 219          
BLAST of EWM28789.1 vs. NCBI_GenBank
Match: gi|325190637|emb|CCA25132.1| (conserved hypothetical protein [Albugo laibachii Nc14] >gi|325191657|emb|CCA25766.1| conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 71.2478 bits (173), Expect = 1.768e-11
Identity = 54/216 (25.00%), Postives = 108/216 (50.00%), Query Frame = 0
Query:    1 MQEEYYRLSRAINRGLNELTRGRLDGGGSISGGHDTMPPSRLLRLVAEIDLDLAEAEGQVKGLEIEVQDMPVKDKRMCREKVLQFRNDLKAMRRSFEAAKARAERHMLLQLSQVSG------KRKNIAERLMSSTEQLHDARKVVDETEHIGEGIIYQMEAQREQLVRASEQVQETNWFTRSARQVMNNMHLRAVRHKACLILIIGFLLVLIGIVF 210
            ++E++ +   AIN  ++ +    L   GS++              + +++  + E +  +K + +E++  P + +   + K+  +RN++  M R +E AK RA  +  L  S   G      + ++   RL  S+ QL  +R++V ETE IG  ++  +  QRE L+ A ++V+ET   TR  R+++  M  R +++   L  +I  L++ I +V 
Sbjct:   19 LEEDFVQNKLAINNNIHII----LQNNGSVTSE------------IQQVEAAITEVKRCLKLMSVELRGKPAQLRNQMQGKLSVYRNEMDGMIRDYERAKLRARENKALSSSSRKGPDALYERVQSSTHRLQRSSTQLDQSRRLVAETEQIGVSVLDSLSQQRESLLSAHQKVRETQDVTRDTRKLLKLMTRRILKNHVILWSVIVLLVIAICVVI 218          
BLAST of EWM28789.1 vs. NCBI_GenBank
Match: gi|302835501|ref|XP_002949312.1| (Qb-SNARE, VTI1-family [Volvox carteri f. nagariensis] >gi|300265614|gb|EFJ49805.1| Qb-SNARE, VTI1-family [Volvox carteri f. nagariensis])

HSP 1 Score: 70.4774 bits (171), Expect = 4.020e-11
Identity = 48/188 (25.53%), Postives = 99/188 (52.66%), Query Frame = 0
Query:   46 VAEIDLDLAEAEGQVKGLEIEVQDMPVKDKRMCREKVLQFRNDLKAMRR-----------SFEAAKARAERHMLLQL-------SQVSGKRK-NIAERLMSSTEQLHDARKVVDETEHIGEGIIYQMEAQREQLVRASEQVQETNWFTRSARQVMNNMHLRAVRHKACLILIIGFLLVLIGIVFNYGV 214
            + E+D D+ EA+  +K +++E + +  +  +  + KV +++ DL ++R             ++AA+A   +++   L       SQ    R  + + +L  S ++L   +K++ ETE +G GI+  + AQRE ++ + + +   +     AR++++NM  R +++K  +  IIGFLL  I I+  + V
Sbjct:   41 LVEVDADIKEADNIIKKMDMEARSVAPERSKQLQNKVKEYKADLASLREQLTKARTAAGSEYDAARAELSQNISQGLGIDYASSSQAQRDRMLSASAKLEQSNDRLQTGKKLLAETEELGSGILANLAAQREVIIHSRDTLHGADDNISKARKILSNMSRRMLQNKLIMFGIIGFLLAGIIIIIYFKV 228          
BLAST of EWM28789.1 vs. NCBI_GenBank
Match: gi|1173937646|gb|OQR88372.1| (hypothetical protein THRCLA_10365 [Thraustotheca clavata])

HSP 1 Score: 68.1662 bits (165), Expect = 1.844e-10
Identity = 54/219 (24.66%), Postives = 106/219 (48.40%), Query Frame = 0
Query:    1 MQEEYYRLSRAINRGLNELTRGRLDGGGSISGGHDTMPPSRLLRLVAEIDLDLAEAEGQVKGLEIEVQDMPVKDKRMCREKVLQFRNDLKAMRRSFEAAKARAERHMLLQLSQVSGKRKN----IAERLMSSTEQLHDARKVVDETEHIGEGIIYQMEAQREQLVRASEQVQETNWFTRSARQVMNNMHLRAVRHKACLILIIGFLLVLIGIVFNYGVL 215
            ++E+Y    RAIN  +++LT+                      R +A+ ++   EA+  +K + +E++      ++  + K+  +R ++   +R  E A   A+       +Q    R +       RL  +++QL  ++++V ETE IG G++  +  QRE L+ A ++V+ET   T  AR+V+  M  R + +K  L  +I  L++ I +VF +  +
Sbjct:    7 LEEDYIECKRAINNSIHDLTQSNQKSSA---------------RQIAQANI--VEAQRCLKLMSVEIRGRSPAQRKEMQAKINVYREEIAGFQRDLERAMLLAKDMPSNSSTQSDAARYDRIVTNTNRLQRASDQLEQSKRIVAETEDIGIGVMDTLAQQRETLLSAHDKVRETRELTGDARRVLLRMSQRVLTNKITLWFVIIVLIISICLVFYHDFI 208          
BLAST of EWM28789.1 vs. NCBI_GenBank
Match: gi|673031980|ref|XP_008869951.1| (hypothetical protein H310_06601 [Aphanomyces invadans] >gi|574473951|gb|ETW00953.1| hypothetical protein H310_06601 [Aphanomyces invadans])

HSP 1 Score: 67.781 bits (164), Expect = 2.751e-10
Identity = 48/215 (22.33%), Postives = 104/215 (48.37%), Query Frame = 0
Query:    3 EEYYRLSRAINRGLNELTRGRLDGGGSISGGHDTMPPSRLLRLVAEIDLDLAEAEGQVKGLEIEVQDMPVKDKRMCREKVLQFRNDLKAMRRSFEAAKARAERHMLLQLSQVSGKRKNIAERLMSSTEQLHDARKVVDETEHIGEGIIYQMEAQREQLVRASEQVQETNWFTRSARQVMNNMHLRAVRHKACLILIIGFLLVLIGIVFNYGVLAR 217
            EEY  L+++++  ++E++             ++  P  +   +    DL L +A   ++ +++EV+ +    KR   +KV Q++  LK++    +  KA+ E+  L   ++   +     ++L  + +++  A + V ETE +  GI  ++   RE++    ++V+  N   RS  +++  M  R  R K  L  ++GF+++ I IV    +  R
Sbjct:   10 EEYKSLAQSVSAKISEIS------------SYEEEPDKKRTAITHASDL-LTQASQLIQQMDLEVRSLDAATKRELSKKVDQYKKSLKSLSDDLKNIKAKEEKEGLFGSAEARSRMAGATQKLQQTGDRIKAAHQTVLETEEVAIGIQEELGRNREKIQATHDKVKSVNDMARSGGRILGRMSARDKRQKLILYGVMGFMVLAIVIVLFSTIFGR 211          
BLAST of EWM28789.1 vs. NCBI_GenBank
Match: gi|241028709|ref|XP_002406341.1| (V-SNARE, putative [Ixodes scapularis] >gi|215491927|gb|EEC01568.1| V-SNARE, putative [Ixodes scapularis])

HSP 1 Score: 67.781 bits (164), Expect = 2.791e-10
Identity = 53/186 (28.49%), Postives = 98/186 (52.69%), Query Frame = 0
Query:   45 LVAEIDLDLAEAEGQVKGLEIEVQDMPVKDKRMCREKVLQFRNDLKAMRRSFEAAK------ARAERHMLLQLS-QVSGKRK----NIAERLMSSTEQLHDARKVVDETEHIGEGIIYQMEAQREQLVRASEQVQETNWFTRSARQVMNNMHLRAVRHKACLILIIGFLLVLIGIVFNYGVLARYH 219
            +VAE++  L EA   ++ +E+EV+ +P   +   + +V  ++++L  +R+ F+ AK       R+   +       V+  +K    +  ER+  ST+ L     +V ETE IG  I+  + AQRE + RA E+V+ET+     +  V++ M  RA++++A L ++    LV + +VF+     R H
Sbjct:   33 MVAEVERHLEEANELLEQMELEVRSLPAPTRPKYQNRVKSYQSELIQLRKEFQRAKIEYSDEVRSREELFANDDGYVNDDQKQRLLDNTERMERSTKLLKGGHGLVLETEKIGAAILSDLSAQRETISRAREKVKETDHDIGKSSTVLSGMMRRAMQNRAILYVVAA--LVFVTVVFSIYYSVRRH 216          
BLAST of EWM28789.1 vs. NCBI_GenBank
Match: gi|675184767|ref|XP_008901268.1| (hypothetical protein PPTG_08103 [Phytophthora parasitica INRA-310] >gi|567967591|gb|ETK92762.1| hypothetical protein L915_03943 [Phytophthora parasitica] >gi|568025305|gb|ETL99323.1| hypothetical protein L917_03801 [Phytophthora parasitica] >gi|568098468|gb|ETN13195.1| hypothetical protein PPTG_08103 [Phytophthora parasitica INRA-310] >gi|570993322|gb|ETP50688.1| hypothetical protein F442_04045 [Phytophthora parasitica P10297] >gi|970660715|gb|KUF98241.1| Vesicle transport v-SNARE 13 [Phytophthora nicotianae])

HSP 1 Score: 67.781 bits (164), Expect = 2.960e-10
Identity = 57/205 (27.80%), Postives = 102/205 (49.76%), Query Frame = 0
Query:   11 AINRGLNELTRGRLDGGGSISGGHDTMPPSRLLRLVAEIDLDLAEAEGQVKGLEIEVQDMPVKDKRMCREKVLQFRNDLKAMRRSFEAAK-----ARAERHMLLQLSQVSGKRKNIAERLMSSTEQLHDARKVVDETEHIGEGIIYQMEAQREQLVRASEQVQETNWFTRSARQVMNNMHLRAVRHKACLILIIGFLLVLIGIVF 210
            AIN  ++++ RG   G G++S     +  +R++           EA+  +K + +EV+      ++  + KV  +R++L+ + R  E A+      +A      Q SQ     KN  +RL  S+++L D  ++V ETE +G  ++  + +QRE L+ A E+V+ET   T  AR+++  M  R + +   L   I  L+V I  V 
Sbjct:   22 AINNSISDILRG---GAGTVSNASQ-IAQARVV-----------EAQRCMKLMTVEVRGRQPMLRKAMQAKVNMYRDELQGLIRDLERAQLMAREGKATSSTANQTSQYERLIKN-NDRLTKSSKKLEDTHRIVAETEEVGIAVLDTLASQRESLLGAHEKVRETGAMTTEARRILQRMTRRIITNTIVLYTTIFVLIVAICYVI 210          
BLAST of EWM28789.1 vs. NCBI_GenBank
Match: gi|698788818|ref|XP_009827441.1| (hypothetical protein H257_04567 [Aphanomyces astaci] >gi|574117288|gb|ETV82770.1| hypothetical protein H257_04567 [Aphanomyces astaci])

HSP 1 Score: 67.781 bits (164), Expect = 2.983e-10
Identity = 48/215 (22.33%), Postives = 103/215 (47.91%), Query Frame = 0
Query:    3 EEYYRLSRAINRGLNELTRGRLDGGGSISGGHDTMPPSRLLRLVAEIDLDLAEAEGQVKGLEIEVQDMPVKDKRMCREKVLQFRNDLKAMRRSFEAAKARAERHMLLQLSQVSGKRKNIAERLMSSTEQLHDARKVVDETEHIGEGIIYQMEAQREQLVRASEQVQETNWFTRSARQVMNNMHLRAVRHKACLILIIGFLLVLIGIVFNYGVLAR 217
            EEY  L+++++  ++E+              ++  P  R   +    DL L +A   ++ +E+EV+ +    KR   +KV Q++  LK++    +  KA+ ++  L   ++   +     ++L  + +++  A + V ETE +  GI  ++   RE++    ++V+  N   RS  +++  M  R  R K  L  ++GF+++ I IV    +  +
Sbjct:   10 EEYKSLAQSVSSKISEI------------ASYEEEPDKRRTAITHATDL-LTQASQLIQQMELEVRSLDAATKRELSKKVDQYKKSLKSLSDDLKNIKAKEDKEGLFGSAEARSRMAGATQKLQQTGDRIKAAHQTVLETEEVAIGIQEELGRNREKIQATHDKVKGVNDMARSGGRILGRMSARDKRQKLILYGVMGFMVLAILIVLFTTIFGK 211          
The following BLAST results are available for this feature:
BLAST of EWM28789.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111212|gb|EWM28789.1|4.578e-164100.00qb- vti1-family [Nannochloropsis gaditana][more]
gi|299471333|emb|CBN79289.1|3.838e-2532.89Soluble NSF Attachment Protein (SNAP) Receptor (SN... [more]
gi|1004141324|gb|KXZ49317.1|8.386e-1225.27hypothetical protein GPECTOR_22g911 [Gonium pector... [more]
gi|325190637|emb|CCA25132.1|1.768e-1125.00conserved hypothetical protein [Albugo laibachii N... [more]
gi|302835501|ref|XP_002949312.1|4.020e-1125.53Qb-SNARE, VTI1-family [Volvox carteri f. nagariens... [more]
gi|1173937646|gb|OQR88372.1|1.844e-1024.66hypothetical protein THRCLA_10365 [Thraustotheca c... [more]
gi|673031980|ref|XP_008869951.1|2.751e-1022.33hypothetical protein H310_06601 [Aphanomyces invad... [more]
gi|241028709|ref|XP_002406341.1|2.791e-1028.49V-SNARE, putative [Ixodes scapularis] >gi|21549192... [more]
gi|675184767|ref|XP_008901268.1|2.960e-1027.80hypothetical protein PPTG_08103 [Phytophthora para... [more]
gi|698788818|ref|XP_009827441.1|2.983e-1022.33hypothetical protein H257_04567 [Aphanomyces astac... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1943rna1943Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications