EWM28789.1, cds1938 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28789.1 vs. NCBI_GenBank
Match: gi|585111212|gb|EWM28789.1| (qb- vti1-family [Nannochloropsis gaditana]) HSP 1 Score: 460.685 bits (1184), Expect = 4.578e-164 Identity = 225/225 (100.00%), Postives = 225/225 (100.00%), Query Frame = 0
Query: 1 MQEEYYRLSRAINRGLNELTRGRLDGGGSISGGHDTMPPSRLLRLVAEIDLDLAEAEGQVKGLEIEVQDMPVKDKRMCREKVLQFRNDLKAMRRSFEAAKARAERHMLLQLSQVSGKRKNIAERLMSSTEQLHDARKVVDETEHIGEGIIYQMEAQREQLVRASEQVQETNWFTRSARQVMNNMHLRAVRHKACLILIIGFLLVLIGIVFNYGVLARYHKKNREQ 225
MQEEYYRLSRAINRGLNELTRGRLDGGGSISGGHDTMPPSRLLRLVAEIDLDLAEAEGQVKGLEIEVQDMPVKDKRMCREKVLQFRNDLKAMRRSFEAAKARAERHMLLQLSQVSGKRKNIAERLMSSTEQLHDARKVVDETEHIGEGIIYQMEAQREQLVRASEQVQETNWFTRSARQVMNNMHLRAVRHKACLILIIGFLLVLIGIVFNYGVLARYHKKNREQ
Sbjct: 1 MQEEYYRLSRAINRGLNELTRGRLDGGGSISGGHDTMPPSRLLRLVAEIDLDLAEAEGQVKGLEIEVQDMPVKDKRMCREKVLQFRNDLKAMRRSFEAAKARAERHMLLQLSQVSGKRKNIAERLMSSTEQLHDARKVVDETEHIGEGIIYQMEAQREQLVRASEQVQETNWFTRSARQVMNNMHLRAVRHKACLILIIGFLLVLIGIVFNYGVLARYHKKNREQ 225
BLAST of EWM28789.1 vs. NCBI_GenBank
Match: gi|299471333|emb|CBN79289.1| (Soluble NSF Attachment Protein (SNAP) Receptor (SNARE) [Ectocarpus siliculosus]) HSP 1 Score: 107.842 bits (268), Expect = 3.838e-25 Identity = 75/228 (32.89%), Postives = 115/228 (50.44%), Query Frame = 0
Query: 2 QEEYYRLSRAINRGLNELTRGRL-DGGGSISGGHDTMPPSRLLRLVAEIDLDLAEAEGQVKGLEIEVQDMPVKDKRMCREKVLQFRNDLKAMRRSFEAAKARAERHMLLQLSQVSGKR---KNIAER---------------LMSSTEQLHDARKVVDETEHIGEGIIYQMEAQREQLVRASEQVQETNWFTRSARQVMNNMHLRAVRHKACLILIIGFLLVLIGIVF 210
+E Y+R S +INR +N + L D G+ S + LDL EAE VKG+EIEV+ M ++R C+ + Q R DLKA+RRS + A RA+ L++ S +N +E L S L D+R+V++ETE IG G++ +E+QRE L+R+ V++T AR+++ ++ R +RH+ CL +I L I V
Sbjct: 21 EESYHRCSMSINRAINGIQLNNLVDAVGATS-----------------LPLDLQEAEQHVKGMEIEVRSMKGNERRQCQSRANQCRADLKALRRSIDQAGQRAQAEELMRRSGGGAIGGGPRNFSESGGDLGGLGPDLAQQSLARSRLSLQDSRRVLEETEGIGRGVMGDLESQRESLLRSRTSVRDTGAAAGQARRLLGSISRRELRHRLCLYAVIALLSAAIVFVL 231
BLAST of EWM28789.1 vs. NCBI_GenBank
Match: gi|1004141324|gb|KXZ49317.1| (hypothetical protein GPECTOR_22g911 [Gonium pectorale]) HSP 1 Score: 72.0182 bits (175), Expect = 8.386e-12 Identity = 46/182 (25.27%), Postives = 99/182 (54.40%), Query Frame = 0
Query: 46 VAEIDLDLAEAEGQVKGLEIEVQDMPVKDKRMCREKVLQFRNDLKAMRRSFEAAK--------ARAERHMLLQLSQVSGKRKNIAERLMSST-------EQLHDARKVVDETEHIGEGIIYQMEAQREQLVRASEQVQETNWFTRSARQVMNNMHLRAVRHKACLILIIGFLLVLIGIVFNY 212
++E+D+D+ EA+ +K +++E + + + R + KV +++ DL +++ A+ ARAE + + + S ++ +R++S T E+L +K++ ETE +G GI+ + AQRE ++ + + + + AR++++NM +++K LI +I FLL I ++ +
Sbjct: 41 LSEVDVDIREADNIIKKMDMEARSVAPERSRNLQNKVKEYKADLASLKEQLTKARSTAGDFESARAELGLGMDYASSSQAQR---DRMLSGTAKLEQSNERLQTGKKLLAETEELGTGILANLAAQRETIIHSRDTLHGADDNISKARKILSNMSRVMLQNKLILIGVIAFLLTAIILIIYF 219
BLAST of EWM28789.1 vs. NCBI_GenBank
Match: gi|325190637|emb|CCA25132.1| (conserved hypothetical protein [Albugo laibachii Nc14] >gi|325191657|emb|CCA25766.1| conserved hypothetical protein [Albugo laibachii Nc14]) HSP 1 Score: 71.2478 bits (173), Expect = 1.768e-11 Identity = 54/216 (25.00%), Postives = 108/216 (50.00%), Query Frame = 0
Query: 1 MQEEYYRLSRAINRGLNELTRGRLDGGGSISGGHDTMPPSRLLRLVAEIDLDLAEAEGQVKGLEIEVQDMPVKDKRMCREKVLQFRNDLKAMRRSFEAAKARAERHMLLQLSQVSG------KRKNIAERLMSSTEQLHDARKVVDETEHIGEGIIYQMEAQREQLVRASEQVQETNWFTRSARQVMNNMHLRAVRHKACLILIIGFLLVLIGIVF 210
++E++ + AIN ++ + L GS++ + +++ + E + +K + +E++ P + + + K+ +RN++ M R +E AK RA + L S G + ++ RL S+ QL +R++V ETE IG ++ + QRE L+ A ++V+ET TR R+++ M R +++ L +I L++ I +V
Sbjct: 19 LEEDFVQNKLAINNNIHII----LQNNGSVTSE------------IQQVEAAITEVKRCLKLMSVELRGKPAQLRNQMQGKLSVYRNEMDGMIRDYERAKLRARENKALSSSSRKGPDALYERVQSSTHRLQRSSTQLDQSRRLVAETEQIGVSVLDSLSQQRESLLSAHQKVRETQDVTRDTRKLLKLMTRRILKNHVILWSVIVLLVIAICVVI 218
BLAST of EWM28789.1 vs. NCBI_GenBank
Match: gi|302835501|ref|XP_002949312.1| (Qb-SNARE, VTI1-family [Volvox carteri f. nagariensis] >gi|300265614|gb|EFJ49805.1| Qb-SNARE, VTI1-family [Volvox carteri f. nagariensis]) HSP 1 Score: 70.4774 bits (171), Expect = 4.020e-11 Identity = 48/188 (25.53%), Postives = 99/188 (52.66%), Query Frame = 0
Query: 46 VAEIDLDLAEAEGQVKGLEIEVQDMPVKDKRMCREKVLQFRNDLKAMRR-----------SFEAAKARAERHMLLQL-------SQVSGKRK-NIAERLMSSTEQLHDARKVVDETEHIGEGIIYQMEAQREQLVRASEQVQETNWFTRSARQVMNNMHLRAVRHKACLILIIGFLLVLIGIVFNYGV 214
+ E+D D+ EA+ +K +++E + + + + + KV +++ DL ++R ++AA+A +++ L SQ R + + +L S ++L +K++ ETE +G GI+ + AQRE ++ + + + + AR++++NM R +++K + IIGFLL I I+ + V
Sbjct: 41 LVEVDADIKEADNIIKKMDMEARSVAPERSKQLQNKVKEYKADLASLREQLTKARTAAGSEYDAARAELSQNISQGLGIDYASSSQAQRDRMLSASAKLEQSNDRLQTGKKLLAETEELGSGILANLAAQREVIIHSRDTLHGADDNISKARKILSNMSRRMLQNKLIMFGIIGFLLAGIIIIIYFKV 228
BLAST of EWM28789.1 vs. NCBI_GenBank
Match: gi|1173937646|gb|OQR88372.1| (hypothetical protein THRCLA_10365 [Thraustotheca clavata]) HSP 1 Score: 68.1662 bits (165), Expect = 1.844e-10 Identity = 54/219 (24.66%), Postives = 106/219 (48.40%), Query Frame = 0
Query: 1 MQEEYYRLSRAINRGLNELTRGRLDGGGSISGGHDTMPPSRLLRLVAEIDLDLAEAEGQVKGLEIEVQDMPVKDKRMCREKVLQFRNDLKAMRRSFEAAKARAERHMLLQLSQVSGKRKN----IAERLMSSTEQLHDARKVVDETEHIGEGIIYQMEAQREQLVRASEQVQETNWFTRSARQVMNNMHLRAVRHKACLILIIGFLLVLIGIVFNYGVL 215
++E+Y RAIN +++LT+ R +A+ ++ EA+ +K + +E++ ++ + K+ +R ++ +R E A A+ +Q R + RL +++QL ++++V ETE IG G++ + QRE L+ A ++V+ET T AR+V+ M R + +K L +I L++ I +VF + +
Sbjct: 7 LEEDYIECKRAINNSIHDLTQSNQKSSA---------------RQIAQANI--VEAQRCLKLMSVEIRGRSPAQRKEMQAKINVYREEIAGFQRDLERAMLLAKDMPSNSSTQSDAARYDRIVTNTNRLQRASDQLEQSKRIVAETEDIGIGVMDTLAQQRETLLSAHDKVRETRELTGDARRVLLRMSQRVLTNKITLWFVIIVLIISICLVFYHDFI 208
BLAST of EWM28789.1 vs. NCBI_GenBank
Match: gi|673031980|ref|XP_008869951.1| (hypothetical protein H310_06601 [Aphanomyces invadans] >gi|574473951|gb|ETW00953.1| hypothetical protein H310_06601 [Aphanomyces invadans]) HSP 1 Score: 67.781 bits (164), Expect = 2.751e-10 Identity = 48/215 (22.33%), Postives = 104/215 (48.37%), Query Frame = 0
Query: 3 EEYYRLSRAINRGLNELTRGRLDGGGSISGGHDTMPPSRLLRLVAEIDLDLAEAEGQVKGLEIEVQDMPVKDKRMCREKVLQFRNDLKAMRRSFEAAKARAERHMLLQLSQVSGKRKNIAERLMSSTEQLHDARKVVDETEHIGEGIIYQMEAQREQLVRASEQVQETNWFTRSARQVMNNMHLRAVRHKACLILIIGFLLVLIGIVFNYGVLAR 217
EEY L+++++ ++E++ ++ P + + DL L +A ++ +++EV+ + KR +KV Q++ LK++ + KA+ E+ L ++ + ++L + +++ A + V ETE + GI ++ RE++ ++V+ N RS +++ M R R K L ++GF+++ I IV + R
Sbjct: 10 EEYKSLAQSVSAKISEIS------------SYEEEPDKKRTAITHASDL-LTQASQLIQQMDLEVRSLDAATKRELSKKVDQYKKSLKSLSDDLKNIKAKEEKEGLFGSAEARSRMAGATQKLQQTGDRIKAAHQTVLETEEVAIGIQEELGRNREKIQATHDKVKSVNDMARSGGRILGRMSARDKRQKLILYGVMGFMVLAIVIVLFSTIFGR 211
BLAST of EWM28789.1 vs. NCBI_GenBank
Match: gi|241028709|ref|XP_002406341.1| (V-SNARE, putative [Ixodes scapularis] >gi|215491927|gb|EEC01568.1| V-SNARE, putative [Ixodes scapularis]) HSP 1 Score: 67.781 bits (164), Expect = 2.791e-10 Identity = 53/186 (28.49%), Postives = 98/186 (52.69%), Query Frame = 0
Query: 45 LVAEIDLDLAEAEGQVKGLEIEVQDMPVKDKRMCREKVLQFRNDLKAMRRSFEAAK------ARAERHMLLQLS-QVSGKRK----NIAERLMSSTEQLHDARKVVDETEHIGEGIIYQMEAQREQLVRASEQVQETNWFTRSARQVMNNMHLRAVRHKACLILIIGFLLVLIGIVFNYGVLARYH 219
+VAE++ L EA ++ +E+EV+ +P + + +V ++++L +R+ F+ AK R+ + V+ +K + ER+ ST+ L +V ETE IG I+ + AQRE + RA E+V+ET+ + V++ M RA++++A L ++ LV + +VF+ R H
Sbjct: 33 MVAEVERHLEEANELLEQMELEVRSLPAPTRPKYQNRVKSYQSELIQLRKEFQRAKIEYSDEVRSREELFANDDGYVNDDQKQRLLDNTERMERSTKLLKGGHGLVLETEKIGAAILSDLSAQRETISRAREKVKETDHDIGKSSTVLSGMMRRAMQNRAILYVVAA--LVFVTVVFSIYYSVRRH 216
BLAST of EWM28789.1 vs. NCBI_GenBank
Match: gi|675184767|ref|XP_008901268.1| (hypothetical protein PPTG_08103 [Phytophthora parasitica INRA-310] >gi|567967591|gb|ETK92762.1| hypothetical protein L915_03943 [Phytophthora parasitica] >gi|568025305|gb|ETL99323.1| hypothetical protein L917_03801 [Phytophthora parasitica] >gi|568098468|gb|ETN13195.1| hypothetical protein PPTG_08103 [Phytophthora parasitica INRA-310] >gi|570993322|gb|ETP50688.1| hypothetical protein F442_04045 [Phytophthora parasitica P10297] >gi|970660715|gb|KUF98241.1| Vesicle transport v-SNARE 13 [Phytophthora nicotianae]) HSP 1 Score: 67.781 bits (164), Expect = 2.960e-10 Identity = 57/205 (27.80%), Postives = 102/205 (49.76%), Query Frame = 0
Query: 11 AINRGLNELTRGRLDGGGSISGGHDTMPPSRLLRLVAEIDLDLAEAEGQVKGLEIEVQDMPVKDKRMCREKVLQFRNDLKAMRRSFEAAK-----ARAERHMLLQLSQVSGKRKNIAERLMSSTEQLHDARKVVDETEHIGEGIIYQMEAQREQLVRASEQVQETNWFTRSARQVMNNMHLRAVRHKACLILIIGFLLVLIGIVF 210
AIN ++++ RG G G++S + +R++ EA+ +K + +EV+ ++ + KV +R++L+ + R E A+ +A Q SQ KN +RL S+++L D ++V ETE +G ++ + +QRE L+ A E+V+ET T AR+++ M R + + L I L+V I V
Sbjct: 22 AINNSISDILRG---GAGTVSNASQ-IAQARVV-----------EAQRCMKLMTVEVRGRQPMLRKAMQAKVNMYRDELQGLIRDLERAQLMAREGKATSSTANQTSQYERLIKN-NDRLTKSSKKLEDTHRIVAETEEVGIAVLDTLASQRESLLGAHEKVRETGAMTTEARRILQRMTRRIITNTIVLYTTIFVLIVAICYVI 210
BLAST of EWM28789.1 vs. NCBI_GenBank
Match: gi|698788818|ref|XP_009827441.1| (hypothetical protein H257_04567 [Aphanomyces astaci] >gi|574117288|gb|ETV82770.1| hypothetical protein H257_04567 [Aphanomyces astaci]) HSP 1 Score: 67.781 bits (164), Expect = 2.983e-10 Identity = 48/215 (22.33%), Postives = 103/215 (47.91%), Query Frame = 0
Query: 3 EEYYRLSRAINRGLNELTRGRLDGGGSISGGHDTMPPSRLLRLVAEIDLDLAEAEGQVKGLEIEVQDMPVKDKRMCREKVLQFRNDLKAMRRSFEAAKARAERHMLLQLSQVSGKRKNIAERLMSSTEQLHDARKVVDETEHIGEGIIYQMEAQREQLVRASEQVQETNWFTRSARQVMNNMHLRAVRHKACLILIIGFLLVLIGIVFNYGVLAR 217
EEY L+++++ ++E+ ++ P R + DL L +A ++ +E+EV+ + KR +KV Q++ LK++ + KA+ ++ L ++ + ++L + +++ A + V ETE + GI ++ RE++ ++V+ N RS +++ M R R K L ++GF+++ I IV + +
Sbjct: 10 EEYKSLAQSVSSKISEI------------ASYEEEPDKRRTAITHATDL-LTQASQLIQQMELEVRSLDAATKRELSKKVDQYKKSLKSLSDDLKNIKAKEDKEGLFGSAEARSRMAGATQKLQQTGDRIKAAHQTVLETEEVAIGIQEELGRNREKIQATHDKVKGVNDMARSGGRILGRMSARDKRQKLILYGVMGFMVLAILIVLFTTIFGK 211 The following BLAST results are available for this feature:
BLAST of EWM28789.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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