rna193, rna193 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna193
Unique Name	rna193
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3219
Alignment location	CM002455.1:505992..507334 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100013g24.9812.mrna
Orig protein id	gnl\|cribi\|Naga_100013g24.9812
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:505992..507334 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100013g24	gene184	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna193	rna193-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30524.1	cds193	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:505992..507334+
coding sequence from alignment at CM002455.1:505992..507334+

mRNA sequence

>rna193 ID=rna193|Name=rna193|organism=Nannochloropsis gaditana|type=mRNA|length=3219bp
TGAACAGCTTGAAACAAGAGGGCGGTCACCCACTAAGATGGCCGGTAGTA
CAGACTTTTTCATGGTTTTGGAGGTGCGTCTATTTTTGTAAAATTTTGTA
ATGACGAAATAGGAAGCTTAGCTTTCTCGCCAAGACTTTGTTGCTTTTCA
TGCCTGCGGTGCCCGTGAAGGAAAAGCGTAGAAGAACATCGACGGCGCGA
TTACGCGTGGTTCGGTCAACGTTTCTTATTCGAAAGACTTGCAGTGAATT
TTTGGTGCCACTTGTAATCAGCCACAAAGTAAACTTACTATTTGTCCATT
TTTCGAATTGGTGGCGGGTGGTATATGCTTACCTGAATGTTATGTCGTAA
AATGGCAAAAGAGTCCCCTTCCTTCAACCTCCCGTCCATACTAGTACACC
GCCATATTAATACCCTTATCTCGAACTAATACCATCGAACAGGAAAAGCC
AAGTAAACGCCCGTCTCGCTCCGATCTCGCCATAATTACTTGTCCATGCT
CAGGGCTAGTAACAAGCCTCCAATTTTCCTTGAGTCCTCCCTCGTTCAGG
ACGATCTACCGTGTAAAGTTATTCACGGGATATACATTGGCTCTGTTCAC
AGTGCTTTCAACTCCGATGCCTTAGGGAAATGTGAGATTACGCACATCCT
TAATGCCACGAGTGTCCCGTCTGTATTTCCTGAACTCTTCACCTATTTCA
ATTTGAGCCTTCACGACAACGAGTCCGCCAATTTGTTAGCATGTCTTCCT
GCCGCCTTTACTTTCATTGAGACAGCTCTTGAAGAAGGAACTGGGGTGCT
GGTCCACTGCTCAGGGGGTCGGTCCCGTTCTGCGTCGCTCGTAATAGCCT
ACTTAATGTCTAAGCTAAAGCTTACCTTCGAGGACGCATTTGCACGTGTA
CGTGCTGCACGTCCTGTCATTCAACTGAACCAAGGGTTTGAAATGCAGCT
TCAAGCCTATGAAGATCAGGCATGCGATGTCTATCGAGCTCATCAGCAAG
TGCTTCGAATCCGTTTACACTCGTTCGCCGAACTACGTCGTCAAGGATCA
ACGCGCGTATCCACGAAGGAAGCAGACAAGCAAAACGTCTCTTATAATCA
ATCGGCTACCTGGGAAACCTATTCTTTTCACAGCCCAGAGCAGGAGAGAC
AGAAAGATCAGCGACAGCCTCATCCAGGACAGAGCGCAGATTGTGAGCAA
TCGAAACGGCAACAACACCAGCCATACGTCAAGGAGGTCGGAATGCGAAA
AGTATGGAGGGAAAGATTAGTCATGTCAAGCACCAAAGGGGTGCCACGAC
ATAGCCCTTACCCTCATCGCATTCACACCGTCTTTGGCAAGAGAGAGCGG
CGTTCCCGCGCCAGCCCCCTTCGAGGCTTTAACGCCGACAATAGCGGATC
TCCTTCATTTCACTTTGTGCAAAGAAGCGGTGGAACAGTCACTTATCGAA
GCGACTCAAAAGAAGAAGCATGCGAGGAGGACTGCAATATCAGAGACTTC
GAGGACACTGGTCGTATCTTCTTCAGCAAACCCATCTTGCCGGTCGTGGG
GAAAAGCCCCGAAGTAGCGACCATACGTGATCCAGTCAACTTACAACCTG
CTCTCATGCCGCCCTCGAGCTTTGGAGAGACCCAAAAAATTCCTCACCTG
CAGGCTTTCGAGAGAGGATTGCACTGTGCGGCATGTTTTACTCGCTTGTT
CAAGCTGGGAAACGTCCTGATAACGGAGTCCAGTGAAGGAGAGGATGATC
AAGAGCTGCAGCTGACTGAAGGCTTGAGAAGTTTGGAAGCAGTAGAGCCT
GATGAGCCACGAAATGAGAAACGCTGTCTTTTTGCGAGTGTACAGAAGGA
GAACAAGCAAAAGGACAAGGAGAAAGTGGAGCAGCGAAATGATTTCGAGG
ATTGGAAGGCAAAAGAAAAGGTTGGGATGACAGAATGGGAAGAGATGCAA
GGGGTTCATGAGGAGTCGGGGGAGGAAAATGACGTCGCCACCGTTGACAG
CGCAAAAAATAGGGTTGCTAGTTTAGATGATGAGAAATGCTTTCATTTCT
CACATGGCTGTAACGATGATAGCAGGCGTGTGGAGGATCTCACGCACGCC
TGCACATCTAATCAGTCCTCGGTACCGCCCTCTTCGCCTCATTCGGACGT
CTCGCGGTCGACGAGTCTGACCATGGCGGCCGCGGCAACGGTCGTAGCCG
CGAGTTTCTCCAGGAGGAAACATCCTAAACGATTACCATCTCCGCTTCCG
GATGTTTTGAGGGCTGAGTCACCTCATCCACCTCCAGCTCCTTCACATCA
TCGATTTGTGATGGAATGTGGTCACAACGCAACATATAAGATGTCCCCTT
GGCTCTACTCTCCTGTTTCCTCGGACATACCTACTCCCTTGCACGCGCTT
GATAAGGCCGAGGGCTTAACGATGTCCCCTATCTCAAGTCCTTGTGTGGA
TGAGGCGCCAGAATCGACGCCAATCTCGCCCGGATCATTCAGCAACCTTA
CCCGGACGCAAGTGCCAAGTCAAGTGTGGGCCTGCATGCGCATATTGGAA
GGTTCAAAAGGGATGGGAGAGCGAACTTTGGCAATCATTCAGGCGGACGA
ATTGGCATGTCGTCGTTTTCGAACGTGTCAAAATCGCTGGATTCTCGTTG
AAGTGTTGCCATGGATGCACAGTATAGTAAATGAAGCGGAGAAGGGCATT
TTGTTCTGCCCTGTAATGCACTGCCGAGCAGAGATAGGGCGCTGGGATTG
GTCTGAACGTGTGCCAATAGGAAGATCGGCAAACAAATCTGATGGAGATT
GTAGGGAGGCTACAGGAGAGCGGGTCATCGACCGATCAGCAAAGGCACCA
TCTAATTCGACCACCTTGGCTCACAAACATGCCGTTAAATCTTCCCAGCA
GCTCCCATTCATCGGTTTTGACAGCTCTAAGATAGTCATCGCAGCAACTA
CATAGATTAATTTTAGAAACTGTCAGGGGTATCAATGAGCATAACTTCTC
GTCAAGGTTAAATGAATCGAGGAACACTACACTTAAAATAAATGCAGCCG
AAGCTATTTGCGATGACAAACTCCAATTGCCCTGTAGATCCATATTGTAT
AAATCTGTCACACCACTTAACTACATTGAGACAGCATACACACTGACCGA
TAAGTAATAAACGGAATTGCTTCAAATATAATTATGAAAAGCATGAAATA
GAGATGCCAGTCAAGATTA

protein sequence of rna193

>rna193-protein ID=rna193-protein|Name=rna193|organism=Nannochloropsis gaditana|type=polypeptide|length=303bp
MASSVVPVRPPTVVRRESVTWPTDDPPPQLKSYGSFSSNWRSQASTLLPS
SQSTNAGNFVHSPRTERRLQWRALLLAVSTVLLTACFLVVVILVTGRTLA
SPHETSPGKDGPLKTFPSLSPKDSFKAEDEQPYLLAVDTVSNVKGGATDA
FPGAYLAKASSHANPSPGYPSSAPEDPNIKIPVTMGCLEAMCESWMAALG
QHHGDGANLTLLDCIQRTGMSADGTRACFAMSHVTDSAERVGLYQCAVCE
GCLAPQSKEEKAALCQTGSGKGKTSAKRSAPSSHASTPSASAWDRYVPKG
FAP

mRNA from alignment at CM002455.1:505992..507334+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna193 ID=rna193|Name=rna193|organism=Nannochloropsis gaditana|type=mRNA|length=1343bp|location=Sequence derived from alignment at CM002455.1:505992..507334+ (Nannochloropsis gaditana)
GTGCACTCACACGCTGAAGACCTTTGTCTGCCTCATGTGGCATGCTCAGA
CTTTTGACTAACTTTCTTTTGCACTTGCGTTCCGTGCTACACAGATTCGC
GGTATAGCGACGCTTGGGCCGAAGTAAGGCCGGGACTTGACGGCAAGGGT
CCTCCCCTCATCTTCCGCCCGCTTTTACACATGGCCTCATCCGTCGTGCC
TGTGAGGCCACCTACTGTGGTTCGGCGGGAGTCTGTAACGTGGCCTACCG
ATGATCCACCACCTCAGTTGAAAAGTTACGGGTCCTTCTCTTCAAACTGG
CGAAGTCAGGCGTCTACGCTGCTCCCATCATCACAGTCGACAAACGCGGG
GAATTTTGTCCACAGTCCCCGTACTGAACGCCGCCTACAATGGCGTGCTT
TATTGCTGGCAGTTTCTACCGTACTACTCACAGCATGTTTCCTTGTAGTC
GTAATCTTAGTCACTGGTCGCACTTTGGCCAGTCCGCACGAAACCAGCCC
CGGCAAGGACGGGCCACTGAAGACCTTTCCATCCTTGTCCCCGAAAGACA
GCTTTAAAGCGGAGGACGAACAGCCGTATCTTCTTGCTGTAGATACCGTC
AGCAATGTTAAGGGGGGCGCTACTGATGCTTTTCCTGGCGCGTATTTAGC
AAAAGCTTCCTCGCACGCTAATCCGAGTCCTGGCTACCCATCAAGCGCCC
CAGAGGATCCTAATATCAAAATTCCCGTGACCATGGGATGCCTTGAAGCT
ATGTGTGAAAGTTGGATGGCAGCTTTGGGTCAGCATCACGGGGACGGGGC
AAATCTGACCCTGCTCGATTGTATACAGCGCACAGGTATGTCCGCTGATG
GCACCCGGGCATGCTTTGCTATGTCGCATGTCACGGACTCGGCCGAGCGC
GTGGGATTGTACCAGTGTGCAGTTTGCGAGGGGTGCCTCGCTCCGCAGAg
caaagaagagaaagcCGCGCTCTGCCAGACTGGTTCCGGCAAAGGAAAGA
CATCCGCCAAGCGATCGGCGCCCTCGTCGCATGCTTCCACGCCTTCGGCA
AGTGCATGGGACCGCTATGTTCCCAAGGGCTTCGCGCCTTAAGAAGGTCA
ATAAGATCAACAGGAAATTATTCCTGGTGGGAAGCTGACTGTCTTGTCGG
TCGATTTTGATAGCATGAGTTCcacgggggaaagagaaaacgCTCACAAA
GTCAAATTTACTAGAGAGTTGGCATCCTTACGGATATGCCGCGTGTATAG
ACTGACAACATATGAGTATACCATGTTTAAAGTAAAGGCAATAGCCGACG
TTTCTGACGCTGGAGCCAGTAGAAGTACTTTTTGTTGCTTGCC

Coding sequence (CDS) from alignment at CM002455.1:505992..507334+

>rna193 ID=rna193|Name=rna193|organism=Nannochloropsis gaditana|type=CDS|length=912bp|location=Sequence derived from alignment at CM002455.1:505992..507334+ (Nannochloropsis gaditana)
ATGGCCTCATCCGTCGTGCCTGTGAGGCCACCTACTGTGGTTCGGCGGGA
GTCTGTAACGTGGCCTACCGATGATCCACCACCTCAGTTGAAAAGTTACG
GGTCCTTCTCTTCAAACTGGCGAAGTCAGGCGTCTACGCTGCTCCCATCA
TCACAGTCGACAAACGCGGGGAATTTTGTCCACAGTCCCCGTACTGAACG
CCGCCTACAATGGCGTGCTTTATTGCTGGCAGTTTCTACCGTACTACTCA
CAGCATGTTTCCTTGTAGTCGTAATCTTAGTCACTGGTCGCACTTTGGCC
AGTCCGCACGAAACCAGCCCCGGCAAGGACGGGCCACTGAAGACCTTTCC
ATCCTTGTCCCCGAAAGACAGCTTTAAAGCGGAGGACGAACAGCCGTATC
TTCTTGCTGTAGATACCGTCAGCAATGTTAAGGGGGGCGCTACTGATGCT
TTTCCTGGCGCGTATTTAGCAAAAGCTTCCTCGCACGCTAATCCGAGTCC
TGGCTACCCATCAAGCGCCCCAGAGGATCCTAATATCAAAATTCCCGTGA
CCATGGGATGCCTTGAAGCTATGTGTGAAAGTTGGATGGCAGCTTTGGGT
CAGCATCACGGGGACGGGGCAAATCTGACCCTGCTCGATTGTATACAGCG
CACAGGTATGTCCGCTGATGGCACCCGGGCATGCTTTGCTATGTCGCATG
TCACGGACTCGGCCGAGCGCGTGGGATTGTACCAGTGTGCAGTTTGCGAG
GGGTGCCTCGCTCCGCAGAgcaaagaagagaaagcCGCGCTCTGCCAGAC
TGGTTCCGGCAAAGGAAAGACATCCGCCAAGCGATCGGCGCCCTCGTCGC
ATGCTTCCACGCCTTCGGCAAGTGCATGGGACCGCTATGTTCCCAAGGGC
TTCGCGCCTTAA

Synonyms

Publications