rna1926, rna1926 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1926
Unique Name	rna1926
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1455
Alignment location	CM002458.1:481151..482574 -

Link to JBrowse

Properties


Property Name	Value
Product	polyketide cyclase/dehydrase
Orig transcript id	gnl\|cribi\|Naga_100002g93.4836.mrna
Orig protein id	gnl\|cribi\|Naga_100002g93.4836
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:481151..482574 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100002g93	gene1839	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1926	rna1926-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28717.1	cds1921	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:481151..482574-
coding sequence from alignment at CM002458.1:481151..482574-

mRNA sequence

>rna1926 ID=rna1926|Name=rna1926|organism=Nannochloropsis gaditana|type=mRNA|length=1455bp
ATGAAAAGACCTCGTCCTAGGACCTTCGTGGCGCCAGTGATAACGATGGC
GCGCATGGCAAGGGCTTTTGGTTTCAAACCTCTACGCCTTGTTTCGAGGA
CCAAATCATGCGGCTGTCAACATGCTCGGGCAGCGTCCACGAGCACCCGC
ATGGCAGTTGCGCCTGCAGCATCGGGGAATCCATCCCAAGCTTCAAGAGC
CCAGCCCTCAGCGCGCCCATCTCCTCCTACGGGTAATTCGCTCGCCGTCA
AACCTTCACGGTTGCAAGAACTTCGTACAAGAATAAGAGAGGATGGAGAT
CTCTTTTCAAAGTTTGCACAGCAGACCTCTGCTTCCCTCCCCGCGACGGC
AGCAGCGCTCCCTTCAAGCCTGGACATCCCAGGGTCGCCGGCCTTGGAAG
ACGAAAAGGAAGTTCGTTTGTCTGCATTGGGCCCCTTGACAGCATCGGAA
AGAGAGCCCCTTGTAGATTCCTTTGGTCGTGAGCACACTTACCTCCGCAT
ATCTCTGACCGAACGTTGTAATCTCCGTTGCACATATTGCATGCCCGCCG
AGGGCGTGACCCTGCAACCGAAAGGCCATCTTCTCACCACGGACGAGATC
TTGCGTCTAGTTGAGGTTTTCGCTGGCTTGGGAGTGACCAAAGTCCGGCT
TACAGGCGGAGAACCCATGGTGCGGAAGGATATAGCCCTATTGACGCGCT
CGCTGAGGGCATTGGGGATCCAAGAGCTGGCCATTACAACGAACGGTGTG
GCTCCAAGGAACAGGTACGAGGAGCTTGTTGCCGCGGGAATGACCCATTT
CAACGTCAGCCTTGACACTTTGCAGTTCGACCGCTTTGCTGCCATCAGCA
GGCGGCCGGGCAGGTTCCTCGAAACGGTCCTCGGTAACGTGGCGCTGTTG
GCGGGCGCCGCGGGTGGAGGAGGTCGCGTCAAACTCAACAACGTCGTCAT
GCGGGGCGCCAACGACGATGAAATTCCCGACTTCGTGGGCTTGACGGCCG
GCCAACGACTGGATGTCCGCTTCATCGAGTGGATGCCATTCGACAGCAAT
GGCTGGAACAGCGGCACCTTCCTGCCCTATGCCGAGATGACCGCCCGCCT
GCAGGAGTCTTTCCCTACCGTGGTTCGCGCCGTCGATGGTCCGCATGACA
CGACCAAGTGGTGGCAGGTGCCTGGGCACCGAGGCCGGGTCGGCTTTATC
ACGAGCATGAGCCAGCACTTCTGCGGGACTTGCAACAGGCTGCGCATCAC
CGCGGACGGGAAGTTGAAGGTCTGTCTATTCGGGGCGGAGGATCTGAGCC
TTCGGGACGCTCTACGAGCGGGAGGCACGAACAAGGAGATGGCAGGCATG
ATCGGAAAGGCGGTTGGGCTCAAGAAGTTCTCGCTGGGGGGACGAGCAGA
TATGTTCGCACTCGCGGGGTCCAAAAACCGACCCATGGTCCTAATTGGCG
GCTGA

protein sequence of rna1926

>rna1926-protein ID=rna1926-protein|Name=rna1926|organism=Nannochloropsis gaditana|type=polypeptide|length=363bp
MLPRTRLALISALLGIIVHPFPGEAANPKLPHTHRGMLEKYELKVPRLAL
DMAAVERLERGYPVKKQIQAAGRAGGRGIVVQDVHAPASVVMGRILDFDN
YNKMVPNVAQCGNYAKRKLMHGDVELRTRYVLSIVGFKLEYFVRHLYRPS
IRTLTWTLDYDRQSDLEDTAGYWSVVPLDKEGNARDWSRVFYSVDLRIPA
WVPQLVVNILNTQALTTATAWVKTQSERAYQTTPTSGKRRRPDARASGRT
GSSSLADEIAKSAAESRSNIYGGGDLWEEFVQEFSDIIDTAKYASQVKER
MQKREERAKSARRKKGETEAGAGPNDSRNILRVLWMTILFYSITQLWITK
AERRVVKGSGIGK

mRNA from alignment at CM002458.1:481151..482574-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1926 ID=rna1926|Name=rna1926|organism=Nannochloropsis gaditana|type=mRNA|length=1424bp|location=Sequence derived from alignment at CM002458.1:481151..482574- (Nannochloropsis gaditana)
ATGTTGCCACGCACAAGGCTGGCGCTGATATCAGCGTTGCTGGGCATCAT
AGTGCATCCCTTTCCCGGAGAAGCAGCGAATCCCAAGCTCCCCCACACGC
ATAGAGGCATGCTCGAGGTAAGGCCTGGAAACTTGGCTGCACTCATGACT
CTTTCCCAAGTGTGCCTCCGACGGTGGACATCAGTCCTGGTTTTCTTGCC
CTCAAAACCTATTCCGTGCTGAACAGAAATATGAGCTTAAGGTGCCAAGA
CTGGCGCTAGACATGGCGGCTGTCGAGCGCCTCGAAAGGGGATACCCGGT
CAAAAAGCAGATTCAAGCAGCAGGGCGGGCGGGAGGGAGAGGCATTGTGG
TCCAGGACGTGCATGCCCCGGCCTCAGTGGTAATGGGCCGTATTTTAGAC
TTCGATAATTATAACAAGATGGTACCCAACGTGGCGCAGTGTGGAAATTA
CGCTAAGCGCAAGCTAATGCACGTGAGTGGCCGGGAGCTCTGGAGAGTGC
GGGATGACTATAAGGATATGAGGAACCGAATAAACGGAAATGCATGCGAA
GCAGTGAGAATACATTGCATTCAAAGGAACATGTGGTGTAGAGACCGGGG
AGGCGATCGAGCGGAAGTGCTTTGTCGCCCCTTTCCTCAACCCGCCTTGC
CAACCGATTTCTCACATTTCGTTTCTACGTCCCACTCACGTGCAGGGGGA
CGTGGAGCTAAGGACACGCTACGTCCTCTCCATCGTCGGGTTCAAGCTCG
AGTACTTCGTGAGGCACCTCTACCGGCCCTCCATACGCACGCTGACATGG
ACCCTGGACTATGACAGACAGTCAGACCTGGAAGACACGGCGGGTTACTG
GTCCGTGGTGCCGCTGGACAAGGAAGGGAATGCGAGGGACTGGTCCCGTG
TCTTCTACTCCGTCGACCTCCGCATCCCCGCCTGGGTGCCCCAGCTGGTG
GTGAACATCCTCAACACGCAGGCGCTCACGACTGCGACTGCTTGGGTCAA
AACACAGAGTGAGAGGGCGTACCAGACGACGCCGACGTCTGGGAAAAGAA
GGCGACCCGATGCCCGGGCTTCAGGACGGACGGGCTCCTCGAGCCTGGCC
GACGAGATTGCCAAGTCGGCAGCTGAGTCGAGGAGTAATATTTACGGAGG
GGGAGACTTGTGGGAAGAATTTGTGCAAGAATTTTCCGACATAATTGACA
CTGCAAAGTACGCCAGTCAAGTTAAGGAGCGGATGCAAAAACGGGAAGAG
AGGGCGAAGAGCGCCAGGCGGAAGAAAGGAGAGACGGAAGCAGGGGCGGG
CCCTAACGATTCGCGAAACATCCTTCGTGTTTTGTGGATGACCATATTAT
TTTACAGTATCACCCAATTATGGATTACGAAGGCAGAGCGCCGAGTTGTG
AAGGGCTCTGGTATTGGAAAATAA

Coding sequence (CDS) from alignment at CM002458.1:481151..482574-

>rna1926 ID=rna1926|Name=rna1926|organism=Nannochloropsis gaditana|type=CDS|length=3276bp|location=Sequence derived from alignment at CM002458.1:481151..482574- (Nannochloropsis gaditana)
GGGGACGTGGAGCTAAGGACACGCTACGTCCTCTCCATCGTCGGGTTCAA
GCTCGAGTACTTCGTGAGGCACCTCTACCGGCCCTCCATACGCACGCTGA
CATGGACCCTGGACTATGACAGACAGTCAGACCTGGAAGACACGGCGGGT
TACTGGTCCGTGGTGCCGCTGGACAAGGAAGGGAATGCGAGGGACTGGTC
CCGTGTCTTCTACTCCGTCGACCTCCGCATCCCCGCCTGGGTGCCCCAGC
TGGTGGTGAACATCCTCAACACGCAGGCGCTCACGACTGCGACTGCTTGG
GTCAAAACACAGAGTGAGAGGGCGTACCAGACGACGCCGACGTCTGGGAA
AAGAAGGCGACCCGATGCCCGGGCTTCAGGACGGACGGGCTCCTCGAGCC
TGGCCGACGAGATTGCCAAGTCGGCAGCTGAGTCGAGGAGTAATATTTAC
GGAGGGGGAGACTTGTGGGAAGAATTTGTGCAAGAATTTTCCGACATAAT
TGACACTGCAAAGTACGCCAGTCAAGTTAAGGAGCGGATGCAAAAACGGG
AAGAGAGGGCGAAGAGCGCCAGGCGGAAGAAAGGAGAGACGGAAGCAGGG
GCGGGCCCTAACGATTCGCGAAACATCCTTCGTGTTTTGTGGATGACCAT
ATTATTTTACAGTATCACCCAATTATGGATTACGAAGGCAGAGCGCCGAG
TTGTGAAGGGCTCTGGTATTGGAAAATAAAAATATGAGCTTAAGGTGCCA
AGACTGGCGCTAGACATGGCGGCTGTCGAGCGCCTCGAAAGGGGATACCC
GGTCAAAAAGCAGATTCAAGCAGCAGGGCGGGCGGGAGGGAGAGGCATTG
TGGTCCAGGACGTGCATGCCCCGGCCTCAGTGGTAATGGGCCGTATTTTA
GACTTCGATAATTATAACAAGATGGTACCCAACGTGGCGCAGTGTGGAAA
TTACGCTAAGCGCAAGCTAATGCACATGTTGCCACGCACAAGGCTGGCGC
TGATATCAGCGTTGCTGGGCATCATAGTGCATCCCTTTCCCGGAGAAGCA
GCGAATCCCAAGCTCCCCCACACGCATAGAGGCATGCTCGAGGGGGACGT
GGAGCTAAGGACACGCTACGTCCTCTCCATCGTCGGGTTCAAGCTCGAGT
ACTTCGTGAGGCACCTCTACCGGCCCTCCATACGCACGCTGACATGGACC
CTGGACTATGACAGACAGTCAGACCTGGAAGACACGGCGGGTTACTGGTC
CGTGGTGCCGCTGGACAAGGAAGGGAATGCGAGGGACTGGTCCCGTGTCT
TCTACTCCGTCGACCTCCGCATCCCCGCCTGGGTGCCCCAGCTGGTGGTG
AACATCCTCAACACGCAGGCGCTCACGACTGCGACTGCTTGGGTCAAAAC
ACAGAGTGAGAGGGCGTACCAGACGACGCCGACGTCTGGGAAAAGAAGGC
GACCCGATGCCCGGGCTTCAGGACGGACGGGCTCCTCGAGCCTGGCCGAC
GAGATTGCCAAGTCGGCAGCTGAGTCGAGGAGTAATATTTACGGAGGGGG
AGACTTGTGGGAAGAATTTGTGCAAGAATTTTCCGACATAATTGACACTG
CAAAGTACGCCAGTCAAGTTAAGGAGCGGATGCAAAAACGGGAAGAGAGG
GCGAAGAGCGCCAGGCGGAAGAAAGGAGAGACGGAAGCAGGGGCGGGCCC
TAACGATTCGCGAAACATCCTTCGTGTTTTGTGGATGACCATATTATTTT
ACAGTATCACCCAATTATGGATTACGAAGGCAGAGCGCCGAGTTGTGAAG
GGCTCTGGTATTGGAAAATAAAAATATGAGCTTAAGGTGCCAAGACTGGC
GCTAGACATGGCGGCTGTCGAGCGCCTCGAAAGGGGATACCCGGTCAAAA
AGCAGATTCAAGCAGCAGGGCGGGCGGGAGGGAGAGGCATTGTGGTCCAG
GACGTGCATGCCCCGGCCTCAGTGGTAATGGGCCGTATTTTAGACTTCGA
TAATTATAACAAGATGGTACCCAACGTGGCGCAGTGTGGAAATTACGCTA
AGCGCAAGCTAATGCACATGTTGCCACGCACAAGGCTGGCGCTGATATCA
GCGTTGCTGGGCATCATAGTGCATCCCTTTCCCGGAGAAGCAGCGAATCC
CAAGCTCCCCCACACGCATAGAGGCATGCTCGAGGGGGACGTGGAGCTAA
GGACACGCTACGTCCTCTCCATCGTCGGGTTCAAGCTCGAGTACTTCGTG
AGGCACCTCTACCGGCCCTCCATACGCACGCTGACATGGACCCTGGACTA
TGACAGACAGTCAGACCTGGAAGACACGGCGGGTTACTGGTCCGTGGTGC
CGCTGGACAAGGAAGGGAATGCGAGGGACTGGTCCCGTGTCTTCTACTCC
GTCGACCTCCGCATCCCCGCCTGGGTGCCCCAGCTGGTGGTGAACATCCT
CAACACGCAGGCGCTCACGACTGCGACTGCTTGGGTCAAAACACAGAGTG
AGAGGGCGTACCAGACGACGCCGACGTCTGGGAAAAGAAGGCGACCCGAT
GCCCGGGCTTCAGGACGGACGGGCTCCTCGAGCCTGGCCGACGAGATTGC
CAAGTCGGCAGCTGAGTCGAGGAGTAATATTTACGGAGGGGGAGACTTGT
GGGAAGAATTTGTGCAAGAATTTTCCGACATAATTGACACTGCAAAGTAC
GCCAGTCAAGTTAAGGAGCGGATGCAAAAACGGGAAGAGAGGGCGAAGAG
CGCCAGGCGGAAGAAAGGAGAGACGGAAGCAGGGGCGGGCCCTAACGATT
CGCGAAACATCCTTCGTGTTTTGTGGATGACCATATTATTTTACAGTATC
ACCCAATTATGGATTACGAAGGCAGAGCGCCGAGTTGTGAAGGGCTCTGG
TATTGGAAAATAAAAATATGAGCTTAAGGTGCCAAGACTGGCGCTAGACA
TGGCGGCTGTCGAGCGCCTCGAAAGGGGATACCCGGTCAAAAAGCAGATT
CAAGCAGCAGGGCGGGCGGGAGGGAGAGGCATTGTGGTCCAGGACGTGCA
TGCCCCGGCCTCAGTGGTAATGGGCCGTATTTTAGACTTCGATAATTATA
ACAAGATGGTACCCAACGTGGCGCAGTGTGGAAATTACGCTAAGCGCAAG
CTAATGCACATGTTGCCACGCACAAGGCTGGCGCTGATATCAGCGTTGCT
GGGCATCATAGTGCATCCCTTTCCCGGAGAAGCAGCGAATCCCAAGCTCC
CCCACACGCATAGAGGCATGCTCGAG

Synonyms

Publications