EWM28717.1, cds1921 (CDS) Nannochloropsis gaditana

Overview
NameEWM28717.1
Unique Namecds1921
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:482458..482574 -
Alignment locationCM002458.1:482103..482348 -
Alignment locationCM002458.1:481151..481879 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28717.1
Productpolyketide cyclase/dehydrase
Orig transcript idgnl|cribi|Naga_100002g93.4836.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:482458..482574 -
CM002458.1supercontigCM002458.1:482103..482348 -
CM002458.1supercontigCM002458.1:481151..481879 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR005031Polyket_cyc
Homology
BLAST of EWM28717.1 vs. NCBI_GenBank
Match: gi|585111140|gb|EWM28717.1| (polyketide cyclase/dehydrase [Nannochloropsis gaditana])

HSP 1 Score: 746.888 bits (1927), Expect = 0.000e+0
Identity = 363/363 (100.00%), Postives = 363/363 (100.00%), Query Frame = 0
Query:    1 MLPRTRLALISALLGIIVHPFPGEAANPKLPHTHRGMLEKYELKVPRLALDMAAVERLERGYPVKKQIQAAGRAGGRGIVVQDVHAPASVVMGRILDFDNYNKMVPNVAQCGNYAKRKLMHGDVELRTRYVLSIVGFKLEYFVRHLYRPSIRTLTWTLDYDRQSDLEDTAGYWSVVPLDKEGNARDWSRVFYSVDLRIPAWVPQLVVNILNTQALTTATAWVKTQSERAYQTTPTSGKRRRPDARASGRTGSSSLADEIAKSAAESRSNIYGGGDLWEEFVQEFSDIIDTAKYASQVKERMQKREERAKSARRKKGETEAGAGPNDSRNILRVLWMTILFYSITQLWITKAERRVVKGSGIGK 363
            MLPRTRLALISALLGIIVHPFPGEAANPKLPHTHRGMLEKYELKVPRLALDMAAVERLERGYPVKKQIQAAGRAGGRGIVVQDVHAPASVVMGRILDFDNYNKMVPNVAQCGNYAKRKLMHGDVELRTRYVLSIVGFKLEYFVRHLYRPSIRTLTWTLDYDRQSDLEDTAGYWSVVPLDKEGNARDWSRVFYSVDLRIPAWVPQLVVNILNTQALTTATAWVKTQSERAYQTTPTSGKRRRPDARASGRTGSSSLADEIAKSAAESRSNIYGGGDLWEEFVQEFSDIIDTAKYASQVKERMQKREERAKSARRKKGETEAGAGPNDSRNILRVLWMTILFYSITQLWITKAERRVVKGSGIGK
Sbjct:    1 MLPRTRLALISALLGIIVHPFPGEAANPKLPHTHRGMLEKYELKVPRLALDMAAVERLERGYPVKKQIQAAGRAGGRGIVVQDVHAPASVVMGRILDFDNYNKMVPNVAQCGNYAKRKLMHGDVELRTRYVLSIVGFKLEYFVRHLYRPSIRTLTWTLDYDRQSDLEDTAGYWSVVPLDKEGNARDWSRVFYSVDLRIPAWVPQLVVNILNTQALTTATAWVKTQSERAYQTTPTSGKRRRPDARASGRTGSSSLADEIAKSAAESRSNIYGGGDLWEEFVQEFSDIIDTAKYASQVKERMQKREERAKSARRKKGETEAGAGPNDSRNILRVLWMTILFYSITQLWITKAERRVVKGSGIGK 363          
BLAST of EWM28717.1 vs. NCBI_GenBank
Match: gi|299117339|emb|CBN75295.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 183.341 bits (464), Expect = 2.437e-51
Identity = 96/239 (40.17%), Postives = 135/239 (56.49%), Query Frame = 0
Query:    7 LALISALLGIIVHPF-PGEAANPKLP--HTHRGMLEKYELKVPRLALDMAAVERLERGYPVKKQIQAA----GRAGGRGIVVQDVHAPASVVMGRILDFDNYNKMVPNVAQCGNYAKRKLMHGDVELRTRYVLSIVGFKLEYFVRHLYRPSIRTLTWTLDYDRQSDLEDTAGYWSVVPLDKEGNARDWSRVFYSVDLRIPAWVPQLVVNILNTQALTTATAWVKTQSERAYQTTPTSGK 238
            L L +A +G     F PG A        H H+G ++ Y+  +P + L       L+ G  V+  ++      G  GGR + VQDV+APA  V  RILDF NYNKMVP V +C NY    L +G   ++T   L++ G KL  F  H Y PS  ++TWTLDY ++S L+D+ G+W V     +    DWSRV+YSV LRIP+W+P +V+  LN +A+  AT WVK +SE  Y+    +G+
Sbjct:   19 LKLAAATMGAACMLFLPGVAQGSAAAEAHPHQGKVKPYKPGMPDIVLTKKQRTDLDGGDLVQDMLKGETDEDGGKGGRALAVQDVNAPAEYVWDRILDFGNYNKMVPKVTECKNYETETLRNGTEIIKTNLKLNVFGVKLNSFFYHTYFPSKSSMTWTLDYTKKSTLDDSVGFWHVATHPSQDKQADWSRVYYSVQLRIPSWIPGIVIGYLNKKAIREATTWVKRESEEKYKADFAAGR 257          
BLAST of EWM28717.1 vs. NCBI_GenBank
Match: gi|585111483|gb|EWM28988.1| (Polyketide cyclase/dehydrase [Nannochloropsis gaditana])

HSP 1 Score: 177.563 bits (449), Expect = 2.188e-50
Identity = 80/185 (43.24%), Postives = 122/185 (65.95%), Query Frame = 0
Query:   31 PHTHRGMLEKYELKVPRLALDMAAVERLERGYPVKKQIQAAGRAGGRGIVVQDVHAPASVVMGRILDFDNYNKMVPNVAQCGNY-AKRKLMHGDVELRTRYVLSIVGFKLEYFVRHLYRPSIRTLTWTLDYDRQSDLEDTAGYWSVVPLDKEGNARDWSRVFYSVDLRIPAWVPQLVVNILNTQA 214
            P  H G+++ ++   P + L  + VE+L +G  VK+Q+ +   +GGRG+V+QDV AP  VV GRI+DF  Y +MVP V+ C NY  +   + G  E+ TR  L+++GF +EYF+ H Y P + T+ WTLDY+R+SDL+D+ GYW V+P   + +   WSRV+YS+D+R+ +W+P  V N+L  Q 
Sbjct:   34 PQGHNGLVKPFKPGPPSIRLKKSEVEKLRKGEAVKQQLSSG--SGGRGLVIQDVEAPPEVVWGRIMDFPAYTRMVPRVSLCENYRVQENYLQGLKEIFTRMRLTVMGFNVEYFIHHKYFPKLNTVVWTLDYNRESDLDDSVGYWHVIP-HPDPDREHWSRVYYSIDMRLKSWMPSFVKNVLKNQV 215          
BLAST of EWM28717.1 vs. NCBI_GenBank
Match: gi|224000505|ref|XP_002289925.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220975133|gb|EED93462.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 179.874 bits (455), Expect = 5.661e-50
Identity = 98/255 (38.43%), Postives = 147/255 (57.65%), Query Frame = 0
Query:    1 MLPRTRLALISALLGIIVHPFPGEAANPKLPHTHRGMLEKYELKVPRLALDMAAVERLERGYPVKKQIQAAGRAGGRGIVVQDVHAPASVVMGRILDFDNYNKMVPNVAQCGNY------AKRKLMHGDVELRTRYVLSIVGFKLEYFVRH-LYRPSIRTLTWTLDYDRQSDLEDTAGYWSVVPLDKEGNARDWSRVFYSVDLRIPAWVPQLVVNILNTQALTTATAWVKTQSERAYQTTPTSGKRRRPDARASG 248
            M P   L      + ++  P+   A+N   PH+H G +E ++   P++ LD  A+  L+ G P + Q+Q+ G AGGRG+VVQDV AP S+V  RILD+DNY+ MVP   +  NY        +     + E+ TR  +     KLE+FVRH LY    ++LTWTLDY ++SD +D+ GYW ++P   +   +  +R++YSV + +  WVP+ VV+ ++++ALT ATAWVK  SE  +      G  RR +  A G
Sbjct:    1 MTPLRSLLGCVLTIALLCTPY-ANASNFNKPHSHTGKVEPFQPGDPKIKLDSKAMSILKAGKPYQTQVQS-GSAGGRGLVVQDVDAPTSIVWERILDYDNYSNMVPKTIESKNYKIVPHKPTKANNFLEKEIYTRMKVGFPMLKLEFFVRHFLYIQHHKSLTWTLDYTKESDFDDSCGYWFILPHPNDPEEK--TRLYYSVQVGMFDWVPKFVVDFMSSKALTDATAWVKKYSEIEWAKEVAKGGSRRTNNNAGG 251          
BLAST of EWM28717.1 vs. NCBI_GenBank
Match: gi|397613998|gb|EJK62537.1| (hypothetical protein THAOC_16847 [Thalassiosira oceanica])

HSP 1 Score: 178.333 bits (451), Expect = 8.228e-48
Identity = 95/226 (42.04%), Postives = 134/226 (59.29%), Query Frame = 0
Query:   23 GEAANPKLPHTHRGMLEKYELKVPRLALDMAAVERLERGYPVKKQIQAAGRAGGRGIVVQDVHAPASVVMGRILDFDNYNKMVPNVAQCGNY------AKRKLMHGDVELRTRYVLSIVGFKLEYFVRH-LYRPSIRTLTWTLDYDRQSDLEDTAGYWSVVPLDKEGNARDWSRVFYSVDLRIPAWVPQLVVNILNTQALTTATAWVKTQSERAYQTTPTSGKRRR 241
              A+N   PH H+G L  ++   P++ LD  A   L  G P + Q+Q +  AGGRG+VVQDV AP S+V  RILD+DNY  MVP  A+  NY        +     + E+ TR  +     KLE+FVRH LY     +LTWTLDY ++SD +D+ GYW +VP   + + +  +R+FYSV + +  WVP+ VV+ ++++ALT ATAWVK  SE  YQ    +G  R+
Sbjct:  193 ASASNFDKPHAHKGKLVPFQPGDPKVKLDGKAKNILRSGKPYQTQVQTSDGAGGRGLVVQDVDAPTSIVWERILDYDNYANMVPKTAESKNYKIVPHKPTKANNFLEKEIYTRMKVGFPMLKLEFFVRHFLYLQHHNSLTWTLDYSKESDFDDSMGYWYIVPHPDDPDEK--TRLFYSVGVSMFDWVPKFVVDFMSSKALTDATAWVKKYSEIEYQKELAAGGGRK 416          
BLAST of EWM28717.1 vs. NCBI_GenBank
Match: gi|551619251|ref|XP_005790214.1| (hypothetical protein EMIHUDRAFT_440256, partial [Emiliania huxleyi CCMP1516] >gi|485643815|gb|EOD37785.1| hypothetical protein EMIHUDRAFT_440256, partial [Emiliania huxleyi CCMP1516])

HSP 1 Score: 151.754 bits (382), Expect = 4.138e-39
Identity = 86/238 (36.13%), Postives = 128/238 (53.78%), Query Frame = 0
Query:   25 AANPKLPHTHRGMLEKYELKVPRLALDMAAVERLERGYPVKKQIQAAGRAGGRGIVVQDVHAPASVVMGRILDFDNYNKMVPNVAQCGNYAKRKLMHGDVELRTRYVLSIVGFKLEYFVRHLYRPSIRTLTWTLDYDRQSDLEDTAGYWSVVPLDKEGNARDWSRVFYSVDLRIPAWVPQLVVNILNTQALTTATAWVKTQSERAYQTT--------------PTSGKRRRPDARASG 248
            AA    PH H G L +YE+  P + L  +  ERL  G PV + ++       R ++VQD+ AP +VVM RI+D  +Y+KMV  V +   Y  R+   G   ++T Y ++++  K+ YF+ H Y P  R +T+ LDY R+SD++D+ GYW V P    G  R  SRV+YS + ++  WVP  V N+L  +AL+ AT WV  +S + ++                P S     PD+ ASG
Sbjct:   10 AAAENEPHYHNGKLTRYEIGPPSVLLSRSDEERLSSGKPVMQAMETGIVGARRLLMVQDIAAPPNVVMDRIMDLAHYDKMVDGVTRNVEY-NREQEGGLQRIKTTYDIAVLHMKMRYFMEHEYDPEKRCMTFHLDYSRRSDIDDSVGYWYVEP----GAGRASSRVYYSCECKLRGWVPSPVYNVLTKEALSKATTWVAKESVKEWRNQQQNDGLLQFVTGPPPDSRPTLSPDSSASG 242          
BLAST of EWM28717.1 vs. NCBI_GenBank
Match: gi|1200534937|gb|OUW47345.1| (hypothetical protein CBD47_04735 [Synechococcus sp. TMED187])

HSP 1 Score: 146.747 bits (369), Expect = 1.168e-37
Identity = 86/210 (40.95%), Postives = 113/210 (53.81%), Query Frame = 0
Query:   23 GEAANPKLPHTHRGMLEKYELKVP-RLALDMAAVE--RLERGYPVKKQIQAAGRAGGRGIVVQDVHAPASVVMGRILDFDNYNKMVPNVAQCGNYAKRKLMHGDVEL-RTRYVLSIVGFKLEYFVRHLYRPSIRTLTWTLDYDRQSDLEDTAGYWSVVPLDKEGNARDWSRVFYSVDLRIPAWVPQLVVNILNTQALTTATAWVKTQSER 228
            G  A+P  PH H+G L KYE K P    L +A V+  RL  G P+  Q+ +      R   +QDVHAPA VV  +ILD  NY+K V  V  C  Y  R+   G VEL   +Y +    F LEYF++H +      +T+ LDY R+S+L DT GYW V  LD       W RVFYS D +IPAW+P  + + L   A   +TAWV  +  +
Sbjct:   42 GRGADPNRPHPHQGTLTKYERKPPSEYGLSVAGVDATRLRSGKPLL-QLISLPNGFKRTASIQDVHAPADVVWSKILDLPNYDKYVDGVVSCEVY--RREASGGVELVFAKYKIRAAAFTLEYFMQHEFERKANAMTFQLDYTRKSELADTVGYWYVEELDD-----GWCRVFYSTDSQIPAWIPGFMKDALVNLAAKRSTAWVDAECRK 243          
BLAST of EWM28717.1 vs. NCBI_GenBank
Match: gi|676379545|ref|XP_009033051.1| (hypothetical protein AURANDRAFT_61214 [Aureococcus anophagefferens] >gi|323456075|gb|EGB11942.1| hypothetical protein AURANDRAFT_61214 [Aureococcus anophagefferens])

HSP 1 Score: 143.28 bits (360), Expect = 4.194e-36
Identity = 85/244 (34.84%), Postives = 130/244 (53.28%), Query Frame = 0
Query:    1 MLPRTRLALISALLGIIVHPFPGEAANPKLPHTHRGMLE-KYELKVPRLALDMAAVERLERGYPVKKQIQAAGRAGGRGIVVQDVHAPASVVMGRILDFDNYNKMVPNVAQCGNYAKRKLMHGDVELRTRYVLSIV-GFKLEYFVRHLYRPSIRTLTWTLDYDRQSDLEDTAGYWSVVPLDKEGNARDWSRVFYSVDLRIPAWVPQLVVNILNTQALTTATAWVKTQSERAYQTTPTSGKRRRP 242
            M PR      +ALL  +   F G+   P      R   + K ++  P  + D+A   +L  G  +   +Q++    G G  V+D+ AP  VV  ++L F+ Y   VP V +C NY   K    +V ++TRY + +V G  +EY++RH++ P    LTWTLDY++QSD++D  G W VVP  +     +WSRV Y+ DL++    PQ V++IL  +AL  A  W+K +SE+ Y     SG+   P
Sbjct:    1 MAPRA-----AALLCGVAAVFGGDPTKPHFHGPTRTPFDPKDDIAPPLKSADLA---KLADGEII--TVQSSDATSGGGCAVEDIRAPPDVVWSQLLTFETYPDKVPKVRECANYEVTKSSDEEV-MKTRYGVKVVPGLSMEYYLRHVFHPRKNALTWTLDYEKQSDIDDCHGIWRVVPHPER---PEWSRVEYAADLKLRGGCPQFVIDILTKKALVDACTWLKVESEKQYAGEVASGRGAAP 230          
BLAST of EWM28717.1 vs. NCBI_GenBank
Match: gi|219116186|ref|XP_002178888.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217409655|gb|EEC49586.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 141.354 bits (355), Expect = 4.419e-36
Identity = 80/235 (34.04%), Postives = 124/235 (52.77%), Query Frame = 0
Query:    4 RTRLALISALLGIIVHPFPGEAANPKLPHTHRGMLEKYELKVPRLALDMAAVERLERGYPVKKQ-IQAAGRAGGRGIVVQDVHAPASVVMGRILDFDNYNKMVPNVAQCGNYAKRKLMHGDVELRTRYVLSIV-GFKLEYFVRHLYRPSIRTLTWTLDYDRQSDLEDTAGYWSVVPLDKEGNARDWSRVFYSVDLRIPAWVPQLVVNILNTQALTTATAWVKTQSERAYQTTPTS 236
            R+ LAL   LL  +      +  N   PH H G+L+ ++     + L  A    L RG  V KQ + AAG   G  + VQD+ AP   V  +ILD   Y   VP V+ C NY  +K   G   ++TR VL ++ G+  E +  H Y P   ++ W+LDY++ SD +D AG+W V    +  +    +RVFYS D+++   +P+ ++N +   AL  AT+WVK ++E+  + TP +
Sbjct:    6 RSTLALSFWLLCALAT---AKKPNRNAPHAHSGLLKAHQPGPFPIVLSNADEAELNRGNSVMKQTMPAAGEEAGTVLCVQDIDAPMPAVWNQILDLGAYKGKVPKVSACDNYICQKNHDGTFTVKTRMVLGVMPGYSYENYYNHRYLPEDSSMVWSLDYEKTSDFDDVAGHWHVA---EHPSKPSHTRVFYSCDVQMKGNLPKPIINYIGKAALKQATSWVKKEAEQNQKATPPA 234          
BLAST of EWM28717.1 vs. NCBI_GenBank
Match: gi|1072224026|gb|OEU08778.1| (hypothetical protein FRACYDRAFT_271578 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 132.494 bits (332), Expect = 9.546e-34
Identity = 65/172 (37.79%), Postives = 99/172 (57.56%), Query Frame = 0
Query:   66 KQIQAAGRA-GGRGIVVQDVHAPASVVMGRILDFDNYNKMVPNVAQCGNYAKRKLMHGDVELRTRYVLSIV-GFKLEYFVRHLYRPSIRTLTWTLDYDRQSDLEDTAGYWSVVPLDKEGNARDWSRVFYSVDLRIPAWVPQLVVNILNTQALTTATAWVKTQSERAYQTTPT 235
            KQIQ  G   GG  I VQDV AP   V  +ILD ++Y   VP V++C NY +++   G   ++T+  + ++ G+    F  H Y P+  ++TW LDYD++SD +D +G+W    L+      D +RVFY+ D+++   VP  VVN ++  AL  AT WVK +SE+  +  P 
Sbjct:    2 KQIQGTGEELGGGAICVQDVAAPKQAVWSQILDLNSYKGKVPKVSECENYFEKENEDGTCTMKTKMGVKVIPGYGYTSFYDHTYSPAKDSVTWRLDYDKKSDFDDVSGHWH---LEDHPTKPDCTRVFYACDIKLKGSVPGPVVNFVSKSALKAATGWVKKESEKNPEAQPN 170          
The following BLAST results are available for this feature:
BLAST of EWM28717.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111140|gb|EWM28717.1|0.000e+0100.00polyketide cyclase/dehydrase [Nannochloropsis gadi... [more]
gi|299117339|emb|CBN75295.1|2.437e-5140.17conserved unknown protein [Ectocarpus siliculosus][more]
gi|585111483|gb|EWM28988.1|2.188e-5043.24Polyketide cyclase/dehydrase [Nannochloropsis gadi... [more]
gi|224000505|ref|XP_002289925.1|5.661e-5038.43predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|397613998|gb|EJK62537.1|8.228e-4842.04hypothetical protein THAOC_16847 [Thalassiosira oc... [more]
gi|551619251|ref|XP_005790214.1|4.138e-3936.13hypothetical protein EMIHUDRAFT_440256, partial [E... [more]
gi|1200534937|gb|OUW47345.1|1.168e-3740.95hypothetical protein CBD47_04735 [Synechococcus sp... [more]
gi|676379545|ref|XP_009033051.1|4.194e-3634.84hypothetical protein AURANDRAFT_61214 [Aureococcus... [more]
gi|219116186|ref|XP_002178888.1|4.419e-3634.04predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1072224026|gb|OEU08778.1|9.546e-3437.79hypothetical protein FRACYDRAFT_271578 [Fragilario... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1926rna1926Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications