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Properties
| Property Name | Value |
|---|
| Product | h aca ribonucleoprotein complex subunit 2-like protein |
| Orig transcript id | gnl|cribi|Naga_100002g100.4835.mrna |
| Orig protein id | gnl|cribi|Naga_100002g100.4835 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002458.1 | supercontig | CM002458.1:468156..469223 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna1920 ID=rna1920|Name=rna1920|organism=Nannochloropsis gaditana|type=mRNA|length=2161bp
TTGCCCGGGCCTTCTACGTGTGTCAAATACTCAAAACAACCTCCACCACA
TTTATTAGGCTTTGTTTTATTGCTCAAGATCGTACTGAAAAGGAATTAAA
GTCTCTTTGGCCCGGAACAACCTCCTCGCGCGTCTCCGCGGCTGCTGGTG
AAGTTCTATTGAAATCTACGCCTCGGCTTTCAAGTCTCAGCCCACTTATC
ACAATGTCGTGGGTGCTTTTGATATACACTTTGGCCATATGGTTGGTGGG
ACTGGGGGGAGTTCTGGCGCCGATCGTCATGGCTTCGTACAACAAGATGG
TGTTGGCAGTGTGCAACAGCTTTGCGGCAGGAGTCATGCTCTCGGCGGGC
TTCGTCCACCTCCTCCACGACGCCGTCTCCTCCCTGTCCGGGCTCCAGGA
GAAATTGTATGGGTTCCCCATCAGCGAGTTTGTCTGTGCCCTTTCCTTTA
TCATGGTGTTTTACATTGAAACACTCTTCGCACCGCCTGTCAAGTCCGGG
GAGCACCACCACCTCGACCACATCCAGGTGGACAAAGGAACCGAGTGCTT
CCCGTCCCAGTGGGAATGGCAGGCCGGAGATTCTCCCAGCGGACTTTTTC
GCTCTATCAGTCAAACCAAGATCAGGAAGTCTGAGCGCCAAGATCTGTTG
CCTCCGCTTCATCAATACGGCGCCGTCATGCCGCGCCTAGCGCCCTCAAG
CTCCGAGACGGAGCCGGCCTGTGAGAAAGATACCGCTGGCGTGATTGTGG
AGAATCACATGAATGAGAACGAAAGCAAAAACGCAACAGAAGACGCTGGG
CGGCAACTGCCCGGGAAGAAGGATTCATGCAGCCAGGCCGGCAAGGCCGC
CCACCAAGAAAACGACGGGATGCGGACGGGGCTTCTGGCGCATCTGAGGC
AGACACAGGCCCCCATTCTCCCGTCGCAAAGCTCTGAGGGGCACGACGAG
GGCAAAGCACAGTCATTGGAAAGCACCCACGGAAGAGTGTCGCCTGGATC
GAAGTCGCCCTCCACTCGGCGCTCGCACCCCGGGATGAGCGCTCCCAGCC
ACTGTCATAGTCACAGTCGCAAACACAGCCACAGCCTTAGCCACAGCCAT
ATTCATGATGAGGCCCACGGTCACGAGGACCTTCACACCGTGGCGGGCGC
CCTGTGCCTGCTGGCGGCGCTAGGCTTTCATTCCGTCATGGAGGGGCTGG
GGCTGGCCACGGCCACCTCGCAGAGCATAGTGGACGGGGGCGGGACCCAA
GTCGGGGTCTTCCTGGCCATTTTGGCCCATAAGGGTTTGGCGGGGCTCAC
GCTAGGCTCGACGATGCTCCTAGCGGAGGTGAGCCAGACCGAGTTCCTCC
TCACTGCCGTCCTCTTCTCAGCGGCTACGCCTGCAGGTGTGGCTCTCGGC
GTGCTGATATCCTCCTATTGCCACACAGCAGCGACAGTTGGTCTCATGGG
AGCGGTTGCGGCGGGCACCTTTATCCATGTCGCCGCCATTGAAATTATAC
CCTCGGCTTTCCGAGACTCCAGCGCCACGCAACTGACCAAGCTGATGTCA
CTAACGGTAGGCTTCTTGGCCATGTCCGCCTTGTTCCTGGTGGCTTGAGA
GAGACAGCGCCCGCAGCAGCCGGGCTTGGCGTGGGGCGTCTGCTTTAATC
ATGCTCTTGAATTTCTCGGAAGCTGATCCAGCGTTGGTGAGGTAGGGGCA
ACCGAGCAACTGGGAAAAAAAAAAGTTTCTTCGGACCTCGTCAACGAATA
TGGGACGATCAAGAATGTTGAGGGTGGTTGTATCTGATAAGAGACGGAGA
TGATGTAAAAAACTCAGCGACGGAACAGTTTCATGACGACTGTTAGGGGC
GCGTACTAATTTGTCGGGCGTCTCCGCCTCGGAGGGCGAGCGAGGAGAGG
AAAGAGGAGAACGATCACAAATCGGAGAAGCTCGTACACCTTGACGTACT
GTTTTATTACCAAGAAAAAATGTGATTATCTCGTCCAAAAAGCTCAAAGA
AGTACGCATGGGTGGAACTTGTCCTTGTAGTGCCCATTTTGTGTTAGAAA
CTCTGGGGTAAGAGGTTTTGGGCGGCTAGTAGAGGCGCTCCAGTCAGTAC
CAAGCTTACACATACATGTCTGAGCCAGTATTGAAGACTTTTATCATGCT
ATCGGAGAATG back to topprotein sequence of rna1920 >rna1920-protein ID=rna1920-protein|Name=rna1920|organism=Nannochloropsis gaditana|type=polypeptide|length=147bp
MSDDEKDTAKKGTKTYEDRLKAVSVISNPLAGKKLTKKLYKLVKKASASK
SVKRGVKEVVKGLKKGEKGICLIAGDIYPIDVISHLAVLCEEKDTPYIYV
PSKHDLGSAAAVKRPTSCVLVSVKGSEKDQKELYAKMALEIKEASKE back to topmRNA from alignment at CM002458.1:468156..469223- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna1920 ID=rna1920|Name=rna1920|organism=Nannochloropsis gaditana|type=mRNA|length=1068bp|location=Sequence derived from alignment at CM002458.1:468156..469223- (Nannochloropsis gaditana)
CCGCAAACCCGGTCTAGATACTACACCCTGCCCGGTGCCTGGCTTGTCAC
TCACAGGCGACTACCACGCTACAGGCATCCACTGTGGCAGGGCACATAGA
CTTACGGGGCAAATATGAGCGACGACGAGAAAGATACAGCCAAAAAGGGG
TAAGAACATCTTTGAGTCTTTGAGTGACTATTTCGCCCTGGCGTGCTTCC
TCTCCCGCAAGGCTCATGACACTCTTTGCACAAATGTTCAGAACAATGTG
CCATACATTATAGCTATACAGTAGTTTGACAGCTTAAGTCTTGTTTGTCG
AGTCTGTAGAAAGCTGTTAGATTCCGATTTATCGATGTAAATGGTCTCCT
ATTGCATTGACAGACTAGATCGTCTGCTGCAGCAAATTCCGTTCTGTAGG
AGTGCATTTGTTTGGTCTTTTAAATAATGTTTGTCTTCAACCGCACAAAA
TAGGACGAAAACTTATGAAGACCGGCTTAAAGCGGTGAGTGTTATTTCGA
ACCCTTTGGCGGGCAAAAAATTGACCAAAAAGCTCTACAAGCTGGTAAAA
AAAGCCTCAGCCTCCAAGAGCGTGAAACGTGGCGTGAAGGAAGTGGTGAA
AGGTTTGAAAAAGGGAGAGAAAGGGATATGTCTGATTGCAGGAGACATAT
ACCCTATCGACGTCATCAGCCACTTGGCGGTACTATGCGAGGAGAAGGAC
ACCCCCTACATATACGTGCCCTCGAAGCATGATCTAGGCAGTGCCGCGGC
GGTAAAGCGGCCCACCAGTTGTGTGCTCGTCAGTGTCAAGGGAAGCGAAA
AGGATCAAAAGGAGCTTTACGCGAAAATGGCGCTCGAAATTAAGGAAGCG
TCGAAAGAATAAACACTGAAATTAAAATTTATGAACACAAGTTACAGCAC
ATACATTCTCCGATAGCATGATAAAAGTCTTCAATACTGGCTCAGACATG
TATGTGTAAGCTTGGTACTGACTGGAGCGCCTCTACTAGCCGCCCAAAAC
CTCTTACCCCAGAGTTTCTAACACAAAATGGGCACTACAAGGACAAGTTC
CACCCATGCGTACTTCTT back to topCoding sequence (CDS) from alignment at CM002458.1:468156..469223- >rna1920 ID=rna1920|Name=rna1920|organism=Nannochloropsis gaditana|type=CDS|length=888bp|location=Sequence derived from alignment at CM002458.1:468156..469223- (Nannochloropsis gaditana)
GACGAAAACTTATGAAGACCGGCTTAAAGCGGTGAGTGTTATTTCGAACC
CTTTGGCGGGCAAAAAATTGACCAAAAAGCTCTACAAGCTGGTAAAAAAA
GCCTCAGCCTCCAAGAGCGTGAAACGTGGCGTGAAGGAAGTGGTGAAAGG
TTTGAAAAAGGGAGAGAAAGGGATATGTCTGATTGCAGGAGACATATACC
CTATCGACGTCATCAGCCACTTGGCGGTACTATGCGAGGAGAAGGACACC
CCCTACATATACGTGCCCTCGAAGCATGATCTAGGCAGTGCCGCGGCGGT
AAAGCGGCCCACCAGTTGTGTGCTCGTCAGTGTCAAGGGAAGCGAAAAGG
ATCAAAAGGAGCTTTACGCGAAAATGGCGCTCGAAATTAAGGAAGCGTCG
AAAGAATAAATGAGCGACGACGAGAAAGATACAGCCAAAAAGGGGACGAA
AACTTATGAAGACCGGCTTAAAGCGGTGAGTGTTATTTCGAACCCTTTGG
CGGGCAAAAAATTGACCAAAAAGCTCTACAAGCTGGTAAAAAAAGCCTCA
GCCTCCAAGAGCGTGAAACGTGGCGTGAAGGAAGTGGTGAAAGGTTTGAA
AAAGGGAGAGAAAGGGATATGTCTGATTGCAGGAGACATATACCCTATCG
ACGTCATCAGCCACTTGGCGGTACTATGCGAGGAGAAGGACACCCCCTAC
ATATACGTGCCCTCGAAGCATGATCTAGGCAGTGCCGCGGCGGTAAAGCG
GCCCACCAGTTGTGTGCTCGTCAGTGTCAAGGGAAGCGAAAAGGATCAAA
AGGAGCTTTACGCGAAAATGGCGCTCGAAATTAAGGAAGCGTCGAAAGAA
TAAATGAGCGACGACGAGAAAGATACAGCCAAAAAGGG back to top
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