EWM28716.1, cds1915 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28716.1 vs. NCBI_GenBank
Match: gi|585111139|gb|EWM28716.1| (h aca ribonucleoprotein complex subunit 2-like protein [Nannochloropsis gaditana]) HSP 1 Score: 285.034 bits (728), Expect = 3.704e-97 Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 0
Query: 1 MSDDEKDTAKKGTKTYEDRLKAVSVISNPLAGKKLTKKLYKLVKKASASKSVKRGVKEVVKGLKKGEKGICLIAGDIYPIDVISHLAVLCEEKDTPYIYVPSKHDLGSAAAVKRPTSCVLVSVKGSEKDQKELYAKMALEIKEASKE 147
MSDDEKDTAKKGTKTYEDRLKAVSVISNPLAGKKLTKKLYKLVKKASASKSVKRGVKEVVKGLKKGEKGICLIAGDIYPIDVISHLAVLCEEKDTPYIYVPSKHDLGSAAAVKRPTSCVLVSVKGSEKDQKELYAKMALEIKEASKE
Sbjct: 1 MSDDEKDTAKKGTKTYEDRLKAVSVISNPLAGKKLTKKLYKLVKKASASKSVKRGVKEVVKGLKKGEKGICLIAGDIYPIDVISHLAVLCEEKDTPYIYVPSKHDLGSAAAVKRPTSCVLVSVKGSEKDQKELYAKMALEIKEASKE 147
BLAST of EWM28716.1 vs. NCBI_GenBank
Match: gi|1210513363|dbj|GAX27760.1| (H/ACA ribonucleoprotein complex subunit 2 [Fistulifera solaris]) HSP 1 Score: 181.8 bits (460), Expect = 3.006e-56 Identity = 90/142 (63.38%), Postives = 114/142 (80.28%), Query Frame = 0
Query: 2 SDDEKDTAKKGTKTYEDRLKAVSVISNPLAGKKLTKKLYKLVKKASASKSVKRGVKEVVKGLKKGEKGICLIAGDIYPIDVISHLAVLCEEKDTPYIYVPSKHDLGSAAAVKRPTSCVLVSVKGSEKDQKELYAKMALEIKE 143
+D +++ AK KTYE+RL+AV+VIS PLA KK TKK +KLVKKA+ASK V+RGVKEVVKGL+KGE G+ ++AGDIYP+DVISHL VL EEK+ PYI+VPSKHDLG+AA+ KRPTSCVL+ D ++L+ +A E KE
Sbjct: 3 ADGDEEEAKTVGKTYEERLEAVNVISQPLASKKSTKKAHKLVKKAAASKHVRRGVKEVVKGLRKGETGLAILAGDIYPVDVISHLPVLLEEKNIPYIFVPSKHDLGAAASTKRPTSCVLIRTPKKSFDGQDLFDALAKEAKE 144
BLAST of EWM28716.1 vs. NCBI_GenBank
Match: gi|1210528796|dbj|GAX12666.1| (H/ACA ribonucleoprotein complex subunit 2 [Fistulifera solaris]) HSP 1 Score: 179.489 bits (454), Expect = 2.379e-55 Identity = 90/140 (64.29%), Postives = 112/140 (80.00%), Query Frame = 0
Query: 4 DEKDTAKKGTKTYEDRLKAVSVISNPLAGKKLTKKLYKLVKKASASKSVKRGVKEVVKGLKKGEKGICLIAGDIYPIDVISHLAVLCEEKDTPYIYVPSKHDLGSAAAVKRPTSCVLVSVKGSEKDQKELYAKMALEIKE 143
DE++T G KTYE+RL+AV+VIS PLA KK TKK +KLVKKA+ASK V+RGVKEVVKGL+KGE G+ ++AGDIYPIDVISHL +L EEK+ PYI+VPSKHDLG+AA+ KRPTSCVL+ D ++L+ + E KE
Sbjct: 6 DEEETKTVG-KTYEERLEAVNVISQPLASKKSTKKAHKLVKKAAASKHVRRGVKEVVKGLRKGETGLAILAGDIYPIDVISHLPILLEEKNIPYIFVPSKHDLGAAASTKRPTSCVLIRTPKKSFDGQDLFDALTKEAKE 144
BLAST of EWM28716.1 vs. NCBI_GenBank
Match: gi|635370881|emb|CCI40958.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 169.088 bits (427), Expect = 2.481e-51 Identity = 80/143 (55.94%), Postives = 110/143 (76.92%), Query Frame = 0
Query: 1 MSDDEKDTAKKGTKTYEDRLKAVSVISNPLAGKKLTKKLYKLVKKASASKSVKRGVKEVVKGLKKGEKGICLIAGDIYPIDVISHLAVLCEEKDTPYIYVPSKHDLGSAAAVKRPTSCVLVSVKGSEKDQKELYAKMALEIKE 143
MSD K+++K TYEDR+ VSVIS PLA KK TK++YKL++KA+ +++K GVKEVVK ++KGEKG+C+IAGDI P+DV++H+ VLCEE D PYI+ PSK DLG++A KRPTSC+L++ +KELY K+ E+K+
Sbjct: 1 MSDQPKESSKSAP-TYEDRILHVSVISKPLASKKHTKRVYKLIRKATKGRAIKHGVKEVVKAIRKGEKGLCVIAGDISPVDVVAHIPVLCEENDIPYIFTPSKVDLGASAQSKRPTSCILITPSKPNFTEKELYEKLFEEVKD 142
BLAST of EWM28716.1 vs. NCBI_GenBank
Match: gi|325186468|emb|CCA20973.1| (ribosomal protein L7Ae/L30e/S12e/Gadd4 putative [Albugo laibachii Nc14]) HSP 1 Score: 168.703 bits (426), Expect = 8.598e-51 Identity = 79/143 (55.24%), Postives = 110/143 (76.92%), Query Frame = 0
Query: 1 MSDDEKDTAKKGTKTYEDRLKAVSVISNPLAGKKLTKKLYKLVKKASASKSVKRGVKEVVKGLKKGEKGICLIAGDIYPIDVISHLAVLCEEKDTPYIYVPSKHDLGSAAAVKRPTSCVLVSVKGSEKDQKELYAKMALEIKE 143
MSD+ K++ K TYEDR+ VSVIS PLA KK TK++YKL++KA+ +++K GVKEVVK ++KGEKG+C+IAGDI P+DV++H+ VLCEE D PYI+ PSK DLG++A KRPTSC++++ +KELY K+ E+K+
Sbjct: 27 MSDESKESPK-SLPTYEDRILHVSVISKPLASKKHTKRVYKLIRKATKGRAIKHGVKEVVKAIRKGEKGLCVIAGDISPVDVVAHIPVLCEEHDIPYIFTPSKVDLGASAQSKRPTSCIMITPSKPNFTEKELYEKLYEEVKD 168
BLAST of EWM28716.1 vs. NCBI_GenBank
Match: gi|953493399|emb|CEG44475.1| (nhp2p [Plasmopara halstedii]) HSP 1 Score: 165.236 bits (417), Expect = 9.477e-50 Identity = 80/143 (55.94%), Postives = 111/143 (77.62%), Query Frame = 0
Query: 1 MSDDEKDTAKKGTKTYEDRLKAVSVISNPLAGKKLTKKLYKLVKKASASKSVKRGVKEVVKGLKKGEKGICLIAGDIYPIDVISHLAVLCEEKDTPYIYVPSKHDLGSAAAVKRPTSCVLVSVKGSEKDQKELYAKMALEIKE 143
MSD E + K+ + YEDR+K +SVI+ PLA KK TK+ YK+VK+A+ KS+KRGVKEVVKG++KG KG+C+IAGDI P+DVISH+ VLCEE D PYI+ PSK DLG++A KRPTSC+L++ + + KE+Y ++ ++K+
Sbjct: 1 MSDME-SSKKRSSSNYEDRVKHISVIAKPLASKKQTKRAYKVVKRATKVKSIKRGVKEVVKGIRKGVKGLCIIAGDISPVDVISHIPVLCEENDIPYIFTPSKVDLGASALSKRPTSCILITPDKAGFNAKEVYDELLKDVKQ 142
BLAST of EWM28716.1 vs. NCBI_GenBank
Match: gi|1173929788|gb|OQR82957.1| (ribosomal protein L7Ae/L30e/S12e/Gadd4 [Achlya hypogyna]) HSP 1 Score: 162.155 bits (409), Expect = 1.600e-48 Identity = 83/142 (58.45%), Postives = 108/142 (76.06%), Query Frame = 0
Query: 1 MSDDEKDTAKKGTKTYEDRLKAVSVISNPLAGKKLTKKLYKLVKKASASKSVKRGVKEVVKGLKKGEKGICLIAGDIYPIDVISHLAVLCEEKDTPYIYVPSKHDLGSAAAVKRPTSCVLVSVKGSEKDQKELYAKMALEIK 142
MSD E+ KG TYE+R+K VSVI+NPLA KKLTKK+YKL+KK++ K KRGVKEVVK ++KGEKG+C+IAGDI PIDVISH+ VLCE D Y++ PSK DLG++AA KRPTSC++V+ + +E Y ++ E+K
Sbjct: 1 MSDTEES---KGV-TYEERVKHVSVIANPLANKKLTKKVYKLIKKSTKVKCTKRGVKEVVKAIRKGEKGLCIIAGDISPIDVISHIPVLCENNDISYVFTPSKVDLGASAASKRPTSCIMVTPGKQGFNVQESYDEILAEVK 138
BLAST of EWM28716.1 vs. NCBI_GenBank
Match: gi|669157964|ref|XP_008614544.1| (hypothetical protein SDRG_10337 [Saprolegnia diclina VS20] >gi|813149465|ref|XP_012200379.1| hypothetical protein SPRG_05700 [Saprolegnia parasitica CBS 223.65] >gi|530733900|gb|EQC32142.1| hypothetical protein SDRG_10337 [Saprolegnia diclina VS20] >gi|641534836|gb|KDO28766.1| hypothetical protein SPRG_05700 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 161.384 bits (407), Expect = 2.887e-48 Identity = 82/142 (57.75%), Postives = 108/142 (76.06%), Query Frame = 0
Query: 1 MSDDEKDTAKKGTKTYEDRLKAVSVISNPLAGKKLTKKLYKLVKKASASKSVKRGVKEVVKGLKKGEKGICLIAGDIYPIDVISHLAVLCEEKDTPYIYVPSKHDLGSAAAVKRPTSCVLVSVKGSEKDQKELYAKMALEIK 142
MSD E+ KG TYE+R+K VS+I+NPLA KKLTKK+YKL+KK++ K KRGVKEVVK ++KGEKG+C+IAGDI PIDVISH+ VLCE D Y++ PSK DLG++AA KRPTSC++V+ + +E Y ++ E+K
Sbjct: 1 MSDTEE---AKGV-TYEERVKHVSIIANPLANKKLTKKVYKLIKKSTKVKCTKRGVKEVVKAIRKGEKGMCIIAGDISPIDVISHIPVLCENNDIAYVFTPSKVDLGASAASKRPTSCIMVTPGKQGFNVQESYDEILAEVK 138
BLAST of EWM28716.1 vs. NCBI_GenBank
Match: gi|1072223915|gb|OEU08668.1| (L30e-like protein [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 161.77 bits (408), Expect = 4.415e-48 Identity = 82/140 (58.57%), Postives = 106/140 (75.71%), Query Frame = 0
Query: 11 KGTKTYEDRLKAVSVISNPLAGKKLTKKLYKLVKKASASKSVKRGVKEVVKGLKKGEKGICLIAGDIYPIDVISHLAVLCEEKDTPYIYVPSKHDLGSAAAVKRPTSCVLVSVKGSEK-------DQKELYAKMALEIKE 143
KG+KTYE+R+ A+++IS PLA KK TKK +KLVKKA+ +K ++RGVKEVVKG++KGE G+C++AGDIYP+DV S L VL EEK+ PY++VPSK DLG+AA KRPTS VL+ K + K D KELY + E KE
Sbjct: 25 KGSKTYEERVLAINIISKPLANKKSTKKCHKLVKKAATAKRIRRGVKEVVKGIRKGESGLCILAGDIYPLDVYSFLPVLLEEKNIPYLFVPSKQDLGAAACTKRPTSVVLIKDKSNPKVKDTKEFDGKELYDTLIKEAKE 164
BLAST of EWM28716.1 vs. NCBI_GenBank
Match: gi|1173950378|gb|OQR98345.1| (ribosomal protein L7Ae/L30e/S12e/Gadd4 [Thraustotheca clavata]) HSP 1 Score: 159.844 bits (403), Expect = 1.223e-47 Identity = 77/136 (56.62%), Postives = 104/136 (76.47%), Query Frame = 0
Query: 7 DTAKKGTKTYEDRLKAVSVISNPLAGKKLTKKLYKLVKKASASKSVKRGVKEVVKGLKKGEKGICLIAGDIYPIDVISHLAVLCEEKDTPYIYVPSKHDLGSAAAVKRPTSCVLVSVKGSEKDQKELYAKMALEIK 142
DT + + TYE+R+K VSVI+NPLA KKLTKK+YKL+KK++ K KRGVKEVVK ++KGEKG+C+IAGDI P+DVISH+ VLCE D Y++ PSK DLG++A+ KRPTSC++V+ + +E Y ++ E K
Sbjct: 3 DTEEAKSVTYEERVKHVSVIANPLANKKLTKKVYKLIKKSTKVKCTKRGVKEVVKAIRKGEKGLCIIAGDISPVDVISHIPVLCENNDIAYVFTPSKVDLGASASSKRPTSCIMVTPSKQGFNVQESYDEILAEAK 138 The following BLAST results are available for this feature:
BLAST of EWM28716.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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