EWM28716.1, cds1915 (CDS) Nannochloropsis gaditana

Overview
NameEWM28716.1
Unique Namecds1915
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:469075..469109 -
Alignment locationCM002458.1:468362..468770 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28716.1
Producth aca ribonucleoprotein complex subunit 2-like protein
Orig transcript idgnl|cribi|Naga_100002g100.4835.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:469075..469109 -
CM002458.1supercontigCM002458.1:468362..468770 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005730nucleolus
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR004038Ribosomal_L7Ae/L30e/S12e/Gad45
IPR029064L30e-like
IPR018492Ribosomal_L7Ae/L8/Nhp2
IPR002415H/ACA_rnp_Nhp2_euk
Homology
BLAST of EWM28716.1 vs. NCBI_GenBank
Match: gi|585111139|gb|EWM28716.1| (h aca ribonucleoprotein complex subunit 2-like protein [Nannochloropsis gaditana])

HSP 1 Score: 285.034 bits (728), Expect = 3.704e-97
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 0
Query:    1 MSDDEKDTAKKGTKTYEDRLKAVSVISNPLAGKKLTKKLYKLVKKASASKSVKRGVKEVVKGLKKGEKGICLIAGDIYPIDVISHLAVLCEEKDTPYIYVPSKHDLGSAAAVKRPTSCVLVSVKGSEKDQKELYAKMALEIKEASKE 147
            MSDDEKDTAKKGTKTYEDRLKAVSVISNPLAGKKLTKKLYKLVKKASASKSVKRGVKEVVKGLKKGEKGICLIAGDIYPIDVISHLAVLCEEKDTPYIYVPSKHDLGSAAAVKRPTSCVLVSVKGSEKDQKELYAKMALEIKEASKE
Sbjct:    1 MSDDEKDTAKKGTKTYEDRLKAVSVISNPLAGKKLTKKLYKLVKKASASKSVKRGVKEVVKGLKKGEKGICLIAGDIYPIDVISHLAVLCEEKDTPYIYVPSKHDLGSAAAVKRPTSCVLVSVKGSEKDQKELYAKMALEIKEASKE 147          
BLAST of EWM28716.1 vs. NCBI_GenBank
Match: gi|1210513363|dbj|GAX27760.1| (H/ACA ribonucleoprotein complex subunit 2 [Fistulifera solaris])

HSP 1 Score: 181.8 bits (460), Expect = 3.006e-56
Identity = 90/142 (63.38%), Postives = 114/142 (80.28%), Query Frame = 0
Query:    2 SDDEKDTAKKGTKTYEDRLKAVSVISNPLAGKKLTKKLYKLVKKASASKSVKRGVKEVVKGLKKGEKGICLIAGDIYPIDVISHLAVLCEEKDTPYIYVPSKHDLGSAAAVKRPTSCVLVSVKGSEKDQKELYAKMALEIKE 143
            +D +++ AK   KTYE+RL+AV+VIS PLA KK TKK +KLVKKA+ASK V+RGVKEVVKGL+KGE G+ ++AGDIYP+DVISHL VL EEK+ PYI+VPSKHDLG+AA+ KRPTSCVL+       D ++L+  +A E KE
Sbjct:    3 ADGDEEEAKTVGKTYEERLEAVNVISQPLASKKSTKKAHKLVKKAAASKHVRRGVKEVVKGLRKGETGLAILAGDIYPVDVISHLPVLLEEKNIPYIFVPSKHDLGAAASTKRPTSCVLIRTPKKSFDGQDLFDALAKEAKE 144          
BLAST of EWM28716.1 vs. NCBI_GenBank
Match: gi|1210528796|dbj|GAX12666.1| (H/ACA ribonucleoprotein complex subunit 2 [Fistulifera solaris])

HSP 1 Score: 179.489 bits (454), Expect = 2.379e-55
Identity = 90/140 (64.29%), Postives = 112/140 (80.00%), Query Frame = 0
Query:    4 DEKDTAKKGTKTYEDRLKAVSVISNPLAGKKLTKKLYKLVKKASASKSVKRGVKEVVKGLKKGEKGICLIAGDIYPIDVISHLAVLCEEKDTPYIYVPSKHDLGSAAAVKRPTSCVLVSVKGSEKDQKELYAKMALEIKE 143
            DE++T   G KTYE+RL+AV+VIS PLA KK TKK +KLVKKA+ASK V+RGVKEVVKGL+KGE G+ ++AGDIYPIDVISHL +L EEK+ PYI+VPSKHDLG+AA+ KRPTSCVL+       D ++L+  +  E KE
Sbjct:    6 DEEETKTVG-KTYEERLEAVNVISQPLASKKSTKKAHKLVKKAAASKHVRRGVKEVVKGLRKGETGLAILAGDIYPIDVISHLPILLEEKNIPYIFVPSKHDLGAAASTKRPTSCVLIRTPKKSFDGQDLFDALTKEAKE 144          
BLAST of EWM28716.1 vs. NCBI_GenBank
Match: gi|635370881|emb|CCI40958.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 169.088 bits (427), Expect = 2.481e-51
Identity = 80/143 (55.94%), Postives = 110/143 (76.92%), Query Frame = 0
Query:    1 MSDDEKDTAKKGTKTYEDRLKAVSVISNPLAGKKLTKKLYKLVKKASASKSVKRGVKEVVKGLKKGEKGICLIAGDIYPIDVISHLAVLCEEKDTPYIYVPSKHDLGSAAAVKRPTSCVLVSVKGSEKDQKELYAKMALEIKE 143
            MSD  K+++K    TYEDR+  VSVIS PLA KK TK++YKL++KA+  +++K GVKEVVK ++KGEKG+C+IAGDI P+DV++H+ VLCEE D PYI+ PSK DLG++A  KRPTSC+L++       +KELY K+  E+K+
Sbjct:    1 MSDQPKESSKSAP-TYEDRILHVSVISKPLASKKHTKRVYKLIRKATKGRAIKHGVKEVVKAIRKGEKGLCVIAGDISPVDVVAHIPVLCEENDIPYIFTPSKVDLGASAQSKRPTSCILITPSKPNFTEKELYEKLFEEVKD 142          
BLAST of EWM28716.1 vs. NCBI_GenBank
Match: gi|325186468|emb|CCA20973.1| (ribosomal protein L7Ae/L30e/S12e/Gadd4 putative [Albugo laibachii Nc14])

HSP 1 Score: 168.703 bits (426), Expect = 8.598e-51
Identity = 79/143 (55.24%), Postives = 110/143 (76.92%), Query Frame = 0
Query:    1 MSDDEKDTAKKGTKTYEDRLKAVSVISNPLAGKKLTKKLYKLVKKASASKSVKRGVKEVVKGLKKGEKGICLIAGDIYPIDVISHLAVLCEEKDTPYIYVPSKHDLGSAAAVKRPTSCVLVSVKGSEKDQKELYAKMALEIKE 143
            MSD+ K++ K    TYEDR+  VSVIS PLA KK TK++YKL++KA+  +++K GVKEVVK ++KGEKG+C+IAGDI P+DV++H+ VLCEE D PYI+ PSK DLG++A  KRPTSC++++       +KELY K+  E+K+
Sbjct:   27 MSDESKESPK-SLPTYEDRILHVSVISKPLASKKHTKRVYKLIRKATKGRAIKHGVKEVVKAIRKGEKGLCVIAGDISPVDVVAHIPVLCEEHDIPYIFTPSKVDLGASAQSKRPTSCIMITPSKPNFTEKELYEKLYEEVKD 168          
BLAST of EWM28716.1 vs. NCBI_GenBank
Match: gi|953493399|emb|CEG44475.1| (nhp2p [Plasmopara halstedii])

HSP 1 Score: 165.236 bits (417), Expect = 9.477e-50
Identity = 80/143 (55.94%), Postives = 111/143 (77.62%), Query Frame = 0
Query:    1 MSDDEKDTAKKGTKTYEDRLKAVSVISNPLAGKKLTKKLYKLVKKASASKSVKRGVKEVVKGLKKGEKGICLIAGDIYPIDVISHLAVLCEEKDTPYIYVPSKHDLGSAAAVKRPTSCVLVSVKGSEKDQKELYAKMALEIKE 143
            MSD E  + K+ +  YEDR+K +SVI+ PLA KK TK+ YK+VK+A+  KS+KRGVKEVVKG++KG KG+C+IAGDI P+DVISH+ VLCEE D PYI+ PSK DLG++A  KRPTSC+L++   +  + KE+Y ++  ++K+
Sbjct:    1 MSDME-SSKKRSSSNYEDRVKHISVIAKPLASKKQTKRAYKVVKRATKVKSIKRGVKEVVKGIRKGVKGLCIIAGDISPVDVISHIPVLCEENDIPYIFTPSKVDLGASALSKRPTSCILITPDKAGFNAKEVYDELLKDVKQ 142          
BLAST of EWM28716.1 vs. NCBI_GenBank
Match: gi|1173929788|gb|OQR82957.1| (ribosomal protein L7Ae/L30e/S12e/Gadd4 [Achlya hypogyna])

HSP 1 Score: 162.155 bits (409), Expect = 1.600e-48
Identity = 83/142 (58.45%), Postives = 108/142 (76.06%), Query Frame = 0
Query:    1 MSDDEKDTAKKGTKTYEDRLKAVSVISNPLAGKKLTKKLYKLVKKASASKSVKRGVKEVVKGLKKGEKGICLIAGDIYPIDVISHLAVLCEEKDTPYIYVPSKHDLGSAAAVKRPTSCVLVSVKGSEKDQKELYAKMALEIK 142
            MSD E+    KG  TYE+R+K VSVI+NPLA KKLTKK+YKL+KK++  K  KRGVKEVVK ++KGEKG+C+IAGDI PIDVISH+ VLCE  D  Y++ PSK DLG++AA KRPTSC++V+      + +E Y ++  E+K
Sbjct:    1 MSDTEES---KGV-TYEERVKHVSVIANPLANKKLTKKVYKLIKKSTKVKCTKRGVKEVVKAIRKGEKGLCIIAGDISPIDVISHIPVLCENNDISYVFTPSKVDLGASAASKRPTSCIMVTPGKQGFNVQESYDEILAEVK 138          
BLAST of EWM28716.1 vs. NCBI_GenBank
Match: gi|669157964|ref|XP_008614544.1| (hypothetical protein SDRG_10337 [Saprolegnia diclina VS20] >gi|813149465|ref|XP_012200379.1| hypothetical protein SPRG_05700 [Saprolegnia parasitica CBS 223.65] >gi|530733900|gb|EQC32142.1| hypothetical protein SDRG_10337 [Saprolegnia diclina VS20] >gi|641534836|gb|KDO28766.1| hypothetical protein SPRG_05700 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 161.384 bits (407), Expect = 2.887e-48
Identity = 82/142 (57.75%), Postives = 108/142 (76.06%), Query Frame = 0
Query:    1 MSDDEKDTAKKGTKTYEDRLKAVSVISNPLAGKKLTKKLYKLVKKASASKSVKRGVKEVVKGLKKGEKGICLIAGDIYPIDVISHLAVLCEEKDTPYIYVPSKHDLGSAAAVKRPTSCVLVSVKGSEKDQKELYAKMALEIK 142
            MSD E+    KG  TYE+R+K VS+I+NPLA KKLTKK+YKL+KK++  K  KRGVKEVVK ++KGEKG+C+IAGDI PIDVISH+ VLCE  D  Y++ PSK DLG++AA KRPTSC++V+      + +E Y ++  E+K
Sbjct:    1 MSDTEE---AKGV-TYEERVKHVSIIANPLANKKLTKKVYKLIKKSTKVKCTKRGVKEVVKAIRKGEKGMCIIAGDISPIDVISHIPVLCENNDIAYVFTPSKVDLGASAASKRPTSCIMVTPGKQGFNVQESYDEILAEVK 138          
BLAST of EWM28716.1 vs. NCBI_GenBank
Match: gi|1072223915|gb|OEU08668.1| (L30e-like protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 161.77 bits (408), Expect = 4.415e-48
Identity = 82/140 (58.57%), Postives = 106/140 (75.71%), Query Frame = 0
Query:   11 KGTKTYEDRLKAVSVISNPLAGKKLTKKLYKLVKKASASKSVKRGVKEVVKGLKKGEKGICLIAGDIYPIDVISHLAVLCEEKDTPYIYVPSKHDLGSAAAVKRPTSCVLVSVKGSEK-------DQKELYAKMALEIKE 143
            KG+KTYE+R+ A+++IS PLA KK TKK +KLVKKA+ +K ++RGVKEVVKG++KGE G+C++AGDIYP+DV S L VL EEK+ PY++VPSK DLG+AA  KRPTS VL+  K + K       D KELY  +  E KE
Sbjct:   25 KGSKTYEERVLAINIISKPLANKKSTKKCHKLVKKAATAKRIRRGVKEVVKGIRKGESGLCILAGDIYPLDVYSFLPVLLEEKNIPYLFVPSKQDLGAAACTKRPTSVVLIKDKSNPKVKDTKEFDGKELYDTLIKEAKE 164          
BLAST of EWM28716.1 vs. NCBI_GenBank
Match: gi|1173950378|gb|OQR98345.1| (ribosomal protein L7Ae/L30e/S12e/Gadd4 [Thraustotheca clavata])

HSP 1 Score: 159.844 bits (403), Expect = 1.223e-47
Identity = 77/136 (56.62%), Postives = 104/136 (76.47%), Query Frame = 0
Query:    7 DTAKKGTKTYEDRLKAVSVISNPLAGKKLTKKLYKLVKKASASKSVKRGVKEVVKGLKKGEKGICLIAGDIYPIDVISHLAVLCEEKDTPYIYVPSKHDLGSAAAVKRPTSCVLVSVKGSEKDQKELYAKMALEIK 142
            DT +  + TYE+R+K VSVI+NPLA KKLTKK+YKL+KK++  K  KRGVKEVVK ++KGEKG+C+IAGDI P+DVISH+ VLCE  D  Y++ PSK DLG++A+ KRPTSC++V+      + +E Y ++  E K
Sbjct:    3 DTEEAKSVTYEERVKHVSVIANPLANKKLTKKVYKLIKKSTKVKCTKRGVKEVVKAIRKGEKGLCIIAGDISPVDVISHIPVLCENNDIAYVFTPSKVDLGASASSKRPTSCIMVTPSKQGFNVQESYDEILAEAK 138          
The following BLAST results are available for this feature:
BLAST of EWM28716.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111139|gb|EWM28716.1|3.704e-97100.00h aca ribonucleoprotein complex subunit 2-like pro... [more]
gi|1210513363|dbj|GAX27760.1|3.006e-5663.38H/ACA ribonucleoprotein complex subunit 2 [Fistuli... [more]
gi|1210528796|dbj|GAX12666.1|2.379e-5564.29H/ACA ribonucleoprotein complex subunit 2 [Fistuli... [more]
gi|635370881|emb|CCI40958.1|2.481e-5155.94unnamed protein product [Albugo candida][more]
gi|325186468|emb|CCA20973.1|8.598e-5155.24ribosomal protein L7Ae/L30e/S12e/Gadd4 putative [A... [more]
gi|953493399|emb|CEG44475.1|9.477e-5055.94nhp2p [Plasmopara halstedii][more]
gi|1173929788|gb|OQR82957.1|1.600e-4858.45ribosomal protein L7Ae/L30e/S12e/Gadd4 [Achlya hyp... [more]
gi|669157964|ref|XP_008614544.1|2.887e-4857.75hypothetical protein SDRG_10337 [Saprolegnia dicli... [more]
gi|1072223915|gb|OEU08668.1|4.415e-4858.57L30e-like protein [Fragilariopsis cylindrus CCMP11... [more]
gi|1173950378|gb|OQR98345.1|1.223e-4756.62ribosomal protein L7Ae/L30e/S12e/Gadd4 [Thraustoth... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1920rna1920Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications