rna192, rna192 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna192
Unique Name	rna192
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1954
Alignment location	CM002455.1:502578..505796 +

Link to JBrowse

Properties


Property Name	Value
Product	dual specificity protein phosphatase 9
Orig transcript id	gnl\|cribi\|Naga_100013g25.9815.mrna
Orig protein id	gnl\|cribi\|Naga_100013g25.9815
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:502578..505796 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100013g25	gene183	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna192	rna192-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30527.1	cds192	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:502578..505796+
coding sequence from alignment at CM002455.1:502578..505796+

mRNA sequence

>rna192 ID=rna192|Name=rna192|organism=Nannochloropsis gaditana|type=mRNA|length=1954bp
CAGTGTGTGTTGAGGGATCGCGCCGAAGCGACTCGACTACTTTCCCGAAA
CAGCCATACATTGGCTATGGTACTCTCTATGAAGTCGAAATCAAGACTGT
ACCACCGGTGCATTTCCATACTGAGGAGGTCGAGGAGGAAAAAGTAGGAG
TGCCATTTTAAATTGAAACCGCTGAAAATATCACGCATCTGCATTCTGTC
TGGCAATATCTGAAACTGCGCGGCATCAATCAGTAAGAAAAGCCTTCCGT
GTTGACCGCACGATGAAACGGGTGTAAGCTGTACGCACGTCGGACTGCGA
GGCTTCAGACTGACATCCGCCTGCGGGTCAAGAAGTGAATGACCATGCGA
AACCTCGTCTTTTCTGCTTTGTCTTTGAGCGACTAAGACACACTACAAGC
TGTCGTATGGTGATGCATCTTTTTAATCACAGCCATGAAATTTTTTAACT
TGTTTATGATCCTTCGCTTCTAGGGGCAACAGAGAATTTCATCTGTACAC
TAGTTTATTGTACCTTACAGTCTTACCGTTTTCCTGAAGACCGAGTATTG
TTGCGGGAGAAATGCTCTCATACAACGGTTTTGTGGTATAATTTGCCGTT
TGCCGACATTCATTCTGCTCACAGCCTAGGAACTAGCACCATGTCTTCGC
CACCGTCGTCTGGTGCCCGGTCCCAAGCCCCCGTACCTCCTGACGCTAAC
GAGGGGTGTGTCGGTCCTACCTCGGAAGAAGCTGGTAAGGCCAGCACTTG
CGCTGGATGTCCGAATCAGAAAGTGTGTGCCTCGGGGGAACCTCGACAAC
CAGACCCTGCTCTTGTAATCGTCCAGGATAAATTGGCGCAAGTGAAGCAC
AAACTGGTGGTGCTCTCTGGAAAGGGTGGTGTCGGAAAGACTACTTTTGC
CTGTCAATTGGCATTTTGTTTGGCCCAGCAGTATGGCCTGCAAGTGGGAT
TGCTGGACGTGGACATTTGTGGGCCCAGCGTGCCCCGTGTCATGGGCTTG
ACGGGGCAGGAGGTTCATCAGAGCGCGGCGGGGTGGTCACCCGTGTATGT
GGATGACAACCTAGGTGTCATGTCCATTGGATTCATGCTTCCCAACGCAG
ATGATGCCGTCATTTGGCGAGGGCCGCGGAAGAATGGACTGATCAAGCAG
TTCCTCACGGACGTAGACTGGGGTGAGCTAGACTATTTAATCATTGACAC
GCCACCGGGAACATCTGACGAGCACCTTTCGATCATTCAGTACCTGAAAG
ATGGCTGTGGAATCGATGGAGCAGTGGTGGTGACTACGCCCCAGGAAGTG
GCAATGGCAGACGTGCGCAAGGAATTGAATTTTTGCAAGAAAACGGGCCT
CCAAGTTGTGGGGGTCGTCGAAAACATGAGCGGCCTCAACGTGCCACTGA
CGGCATTAAATTTTTTAGAGAAACCAGTTGCCAGACATAGTGGCAATGGG
GCTGGAATTGAGGAAACAGACAAGAGTATGGAGACTGACAAGCCCGTGAT
AAAGGACAAAACAGCTGAGGTACTAGAAGCTCTTCGAAAAGTAGATCCAT
CCTTGCTTGACTGCGTAGTACAGGCAGAAGTTTTTCCCGCCTTTGGAAGT
GGCCCGCAAGGAATGGCAGCGGCATTTGAGGTACCTTTCCTCGGTAAGCT
GCCGCTCGATCCCGACTTGTTGCGCGCATGTGAAGAAGGTGTCTCTCTTG
AGGAAAAAGCGCCGCAGTCACCTGCTGTGCCGGCGCTGCATACTATTGTA
CGGAGTATCGTGGCTGCCACCATCAACAAAAGATCTAAAACCGACGATTG
ATGACGAAACCTCGTATTGAAGCAAATCTGCAGACCTAAAGGGTGCGTGC
TGGCGAGCATTGCAGTCTTCCACACTCTCTGGCATAGACTTCACCAACAT
TTGCCTCCTTTATCGCGGTAGTAAAGAAAAAATGGGATAAATTGTGAGAA
TATC

protein sequence of rna192

>rna192-protein ID=rna192-protein|Name=rna192|organism=Nannochloropsis gaditana|type=polypeptide|length=819bp
MLRASNKPPIFLESSLVQDDLPCKVIHGIYIGSVHSAFNSDALGKCEITH
ILNATSVPSVFPELFTYFNLSLHDNESANLLACLPAAFTFIETALEEGTG
VLVHCSGGRSRSASLVIAYLMSKLKLTFEDAFARVRAARPVIQLNQGFEM
QLQAYEDQACDVYRAHQQVLRIRLHSFAELRRQGSTRVSTKEADKQNVSY
NQSATWETYSFHSPEQERQKDQRQPHPGQSADCEQSKRQQHQPYVKEVGM
RKVWRERLVMSSTKGVPRHSPYPHRIHTVFGKRERRSRASPLRGFNADNS
GSPSFHFVQRSGGTVTYRSDSKEEACEEDCNIRDFEDTGRIFFSKPILPV
VGKSPEVATIRDPVNLQPALMPPSSFGETQKIPHLQAFERGLHCAACFTR
LFKLGNVLITESSEGEDDQELQLTEGLRSLEAVEPDEPRNEKRCLFASVQ
KENKQKDKEKVEQRNDFEDWKAKEKVGMTEWEEMQGVHEESGEENDVATV
DSAKNRVASLDDEKCFHFSHGCNDDSRRVEDLTHACTSNQSSVPPSSPHS
DVSRSTSLTMAAAATVVAASFSRRKHPKRLPSPLPDVLRAESPHPPPAPS
HHRFVMECGHNATYKMSPWLYSPVSSDIPTPLHALDKAEGLTMSPISSPC
VDEAPESTPISPGSFSNLTRTQVPSQVWACMRILEGSKGMGERTLAIIQA
DELACRRFRTCQNRWILVEVLPWMHSIVNEAEKGILFCPVMHCRAEIGRW
DWSERVPIGRSANKSDGDCREATGERVIDRSAKAPSNSTTLAHKHAVKSS
QQLPFIGFDSSKIVIAATT

mRNA from alignment at CM002455.1:502578..505796+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna192 ID=rna192|Name=rna192|organism=Nannochloropsis gaditana|type=mRNA|length=3219bp|location=Sequence derived from alignment at CM002455.1:502578..505796+ (Nannochloropsis gaditana)
TGAACAGCTTGAAACAAGAGGGCGGTCACCCACTAAGATGGCCGGTAGTA
CAGACTTTTTCATGGTTTTGGAGGTGCGTCTATTTTTGTAAAATTTTGTA
ATGACGAAATAGGAAGCTTAGCTTTCTCGCCAAGACTTTGTTGCTTTTCA
TGCCTGCGGTGCccgtgaaggaaaagcgTAGAAGAACATCGACGGCGCGA
TTACGCGTGGTTCGGTCAACGTTTCTTATTCGAAAGACTTGCAGTGAATT
TTTGGTGCCACTTGTAATCAGCCACAAAGTAAACTTACTATTTGTCCATT
TTTCGAATTGGTGGCGGGTGGTATATGCTTACCTGAATGTTATGTCGTAA
AATGGCAAAAGAgtccccttccttcaacCTCCCGTCCATACTAGTACACC
GCCATATTAATACCCTTATCTCGAACTAATACCATCGAACAGGAAAAGCC
AAGTAAACGCCCGTCTCGCTCCGATCTCGCCATAATTACTTGTCCATGCT
CAGGGCTAGTAACAAGCCTCCAATTTTCCTTGAGTCCTCCCTCGTTCAGG
ACGATCTACCGTGTAAAGTTATTCACGGGATATACATTGGCTCTGTTCAC
AGTGCTTTCAACTCCGATGCCTTAGGGAAATGTGAGATTACGCACATCCT
TAATGCCACGAGTGTCCCGTCTGTATTTCCTGAACTCTTCACCTATTTCA
ATTTGAGCCTTCACGACAACGAGTCCGCCAATTTGTTAGCATGTCTTCCT
GCCGCCTTTACTTTCATTGAGACAGCTCTTGAAGAAGGAACTGGGGTGCT
GGTCCACTGCTCAGGGGGTCGGTCCCGTTCTGCGTCGCTCGTAATAGCCT
ACTTAATGTCTAAGCTAAAGCTTACCTTCGAGGACGCATTTGCACGTGTA
CGTGCTGCACGTCCTGTCATTCAACTGAACCAAGGGTTTGAAATGCAGCT
TCAAGCCTATGAAGATCAGGCATGCGATGTCTATCGAGCTCATCAGCAAG
TGCTTCGAATCCGTTTACACTCGTTCGCCGAACTACGTCGTCAAGGATCA
ACGCGCGTATCCACGAAGGAAGCAGACAAGCAAAACGTCTCTTATAATCA
ATCGGCTACCTGGGAAACCTATTCTTTTCACAGCCCAGAGCAGGAGAGAC
AGAAAGATCAGCGACAGCCTCATCCAGGACAGAGCGCAGATTGTGAGCAA
TCGAAACGGCAACAACACCAGCCATACGTCAAGGAGGTCGGAATGCGAAA
AgtatggagggaaagattaGTCATGTCAAGCACCAAAGGGGTGCCACGAC
ATAGCCCTTACCCTCATCGCATTCACACCGTCTTTGGCAAGAGAGAGCGG
CGTTCCCGCGCCAGCCCCCTTCGAGGCTTTAACGCCGACAATAGCGGATC
TCCTTCATTTCACTTTGTGCAAAGAAGCGGTGGAACAGTCACTTATCGAA
GCGACTCAAAAGAAGAAGCATGCGAGGAGGACTGCAATATCAGAGACTTC
GAGGACACTGGTCGTATCTTCTTCAGCAAACCCATCTTGCCGGTCGTGGG
GAAAAGCCCCGAAGTAGCGACCATACGTGATCCAGTCAACTTACAACCTG
CTCTCATGCCGCCCTCGAGCTTTGGAGAGACCCAAAAAATTCCTCACCTG
CAGGCTTTCGAGAGAGGATTGCACTGTGCGGCATGTTTTACTCGCTTGTT
CAAGCTGGGAAACGTCCTGATAACGGAGTCCagtgaaggagaggatgatc
AAGAGCTGCAGCTGACTGAAGGCTTGAGAAGTTTGGAAGCAGTAGAGCCT
GATGAGCCACGAAATGAGAAACGCTGTCTTTTTGCGAGTGTACAGAAGGA
GAACAAGcaaaaggacaaggagaaagtggagcAGCGAAATGATTTCGAGG
ATTGGAAGGCAAAAGAAAAGGTTGGGATGACAGAATGGGAAGAGATGCAA
GGGGTTCATGAGGagtcgggggaggaaaatgacgtCGCCACCGTTGACAG
CGCAAAAAATAGGGTTGCTAGTTTAGATGATGAGAAATGCTTTCATTTCT
CACATGGCTGTAACGATGATAGCAGGCGTGTGGAGGATCTCACGCACGCC
TGCACATCTAATCAGTCCTCGGTaccgccctcttcgcctcaTTCGGACGT
CTCGCGGTCGACGAGTCTGAccatggcggccgcggcaaCGGTCGTAGCCG
CGAGTTTCTCCAGGAGGAAACATCCTAAACGATTACCATCTCCGCTTCCG
GATGTTTTGAGGGCTGAGTCacctcatccacctccagctccttcacATCA
TCGATTTGTGATGGAATGTGGTCACAACGCAACATATAAGATGTCCCCTT
GGCTCTACTCTCCTGTTTCCTCGGACATACCTACTCCCTTGCACGCGCTT
GATAAGGCCGAGGGCTTAACGATGTCCCCTATCTCAAGTCCTTGTGTGGA
TGAGGCGCCAGAATCGACGCCAATCTCGCCCGGATCATTCAGCAACCTTA
CCCGGACGCAAGTGCCAAGTCAAGTGTGGGCCTGCATGCGCATATTGGAA
GGTTCAAAAGGGATGGGAGAGCGAACTTTGGCAATCATTCAGGCGGACGA
ATTGGCATGTCGTCGTTTTCGAACGTGTCAAAATCGCTGGATTCTCGTTG
AAGTGTTGCCATGGATGCACAGTATAGTAAATGAAGCGGAGAAGGGCATT
TTGTTCTGCCCTGTAATGCACTGCCGAGCAGAGATAGGGCGCTGGGATTG
GTCTGAACGTGTGCCAATAGGAAGATCGGCAAACAAATCTGATGGAGATT
GTAGGGAGGCTACAGGAGAGCGGGTCATCGACCGATCAGCAAAGGCACCA
TCTAATTCGACCACCTTGGCTCACAAACATGCCGTTAAATCTTCCCAGCA
GCTCCCATTCATCGGTTTTGACAGCTCTAAGATAGTCATCGCAGCAACTA
CATAGATTAATTTTAGAAACTGTCAGGGGTATCAATGAGCATAACTTCTC
GTCAAGGTTAAATGAATCGAGGAACACTACACTTAAAATAAATGCAGCCG
AAGCTATTTGCGATGACAAACTCCAATTGCCCTGTAGATCCATATTGTAT
AAATCTGTCACACCACTTAACTACATTGAGACAGCATACACACTGACCGA
TAAGTAATAAACGGAATTGCTTCAAATATAATTATGAAAAGCATGAAATA
GAGATGCCAGTCAAGATTA

Coding sequence (CDS) from alignment at CM002455.1:502578..505796+

>rna192 ID=rna192|Name=rna192|organism=Nannochloropsis gaditana|type=CDS|length=2460bp|location=Sequence derived from alignment at CM002455.1:502578..505796+ (Nannochloropsis gaditana)
ATGCTCAGGGCTAGTAACAAGCCTCCAATTTTCCTTGAGTCCTCCCTCGT
TCAGGACGATCTACCGTGTAAAGTTATTCACGGGATATACATTGGCTCTG
TTCACAGTGCTTTCAACTCCGATGCCTTAGGGAAATGTGAGATTACGCAC
ATCCTTAATGCCACGAGTGTCCCGTCTGTATTTCCTGAACTCTTCACCTA
TTTCAATTTGAGCCTTCACGACAACGAGTCCGCCAATTTGTTAGCATGTC
TTCCTGCCGCCTTTACTTTCATTGAGACAGCTCTTGAAGAAGGAACTGGG
GTGCTGGTCCACTGCTCAGGGGGTCGGTCCCGTTCTGCGTCGCTCGTAAT
AGCCTACTTAATGTCTAAGCTAAAGCTTACCTTCGAGGACGCATTTGCAC
GTGTACGTGCTGCACGTCCTGTCATTCAACTGAACCAAGGGTTTGAAATG
CAGCTTCAAGCCTATGAAGATCAGGCATGCGATGTCTATCGAGCTCATCA
GCAAGTGCTTCGAATCCGTTTACACTCGTTCGCCGAACTACGTCGTCAAG
GATCAACGCGCGTATCCACGAAGGAAGCAGACAAGCAAAACGTCTCTTAT
AATCAATCGGCTACCTGGGAAACCTATTCTTTTCACAGCCCAGAGCAGGA
GAGACAGAAAGATCAGCGACAGCCTCATCCAGGACAGAGCGCAGATTGTG
AGCAATCGAAACGGCAACAACACCAGCCATACGTCAAGGAGGTCGGAATG
CGAAAAgtatggagggaaagattaGTCATGTCAAGCACCAAAGGGGTGCC
ACGACATAGCCCTTACCCTCATCGCATTCACACCGTCTTTGGCAAGAGAG
AGCGGCGTTCCCGCGCCAGCCCCCTTCGAGGCTTTAACGCCGACAATAGC
GGATCTCCTTCATTTCACTTTGTGCAAAGAAGCGGTGGAACAGTCACTTA
TCGAAGCGACTCAAAAGAAGAAGCATGCGAGGAGGACTGCAATATCAGAG
ACTTCGAGGACACTGGTCGTATCTTCTTCAGCAAACCCATCTTGCCGGTC
GTGGGGAAAAGCCCCGAAGTAGCGACCATACGTGATCCAGTCAACTTACA
ACCTGCTCTCATGCCGCCCTCGAGCTTTGGAGAGACCCAAAAAATTCCTC
ACCTGCAGGCTTTCGAGAGAGGATTGCACTGTGCGGCATGTTTTACTCGC
TTGTTCAAGCTGGGAAACGTCCTGATAACGGAGTCCagtgaaggagagga
tgatcAAGAGCTGCAGCTGACTGAAGGCTTGAGAAGTTTGGAAGCAGTAG
AGCCTGATGAGCCACGAAATGAGAAACGCTGTCTTTTTGCGAGTGTACAG
AAGGAGAACAAGcaaaaggacaaggagaaagtggagcAGCGAAATGATTT
CGAGGATTGGAAGGCAAAAGAAAAGGTTGGGATGACAGAATGGGAAGAGA
TGCAAGGGGTTCATGAGGagtcgggggaggaaaatgacgtCGCCACCGTT
GACAGCGCAAAAAATAGGGTTGCTAGTTTAGATGATGAGAAATGCTTTCA
TTTCTCACATGGCTGTAACGATGATAGCAGGCGTGTGGAGGATCTCACGC
ACGCCTGCACATCTAATCAGTCCTCGGTaccgccctcttcgcctcaTTCG
GACGTCTCGCGGTCGACGAGTCTGAccatggcggccgcggcaaCGGTCGT
AGCCGCGAGTTTCTCCAGGAGGAAACATCCTAAACGATTACCATCTCCGC
TTCCGGATGTTTTGAGGGCTGAGTCacctcatccacctccagctccttca
cATCATCGATTTGTGATGGAATGTGGTCACAACGCAACATATAAGATGTC
CCCTTGGCTCTACTCTCCTGTTTCCTCGGACATACCTACTCCCTTGCACG
CGCTTGATAAGGCCGAGGGCTTAACGATGTCCCCTATCTCAAGTCCTTGT
GTGGATGAGGCGCCAGAATCGACGCCAATCTCGCCCGGATCATTCAGCAA
CCTTACCCGGACGCAAGTGCCAAGTCAAGTGTGGGCCTGCATGCGCATAT
TGGAAGGTTCAAAAGGGATGGGAGAGCGAACTTTGGCAATCATTCAGGCG
GACGAATTGGCATGTCGTCGTTTTCGAACGTGTCAAAATCGCTGGATTCT
CGTTGAAGTGTTGCCATGGATGCACAGTATAGTAAATGAAGCGGAGAAGG
GCATTTTGTTCTGCCCTGTAATGCACTGCCGAGCAGAGATAGGGCGCTGG
GATTGGTCTGAACGTGTGCCAATAGGAAGATCGGCAAACAAATCTGATGG
AGATTGTAGGGAGGCTACAGGAGAGCGGGTCATCGACCGATCAGCAAAGG
CACCATCTAATTCGACCACCTTGGCTCACAAACATGCCGTTAAATCTTCC
CAGCAGCTCCCATTCATCGGTTTTGACAGCTCTAAGATAGTCATCGCAGC
AACTACATAG

Synonyms

Publications