rna1917, rna1917 (mRNA) Nannochloropsis gaditana

Overview
Namerna1917
Unique Namerna1917
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length806
Alignment locationCM002458.1:462514..464283 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100002g103.4881.mrna
Orig protein idgnl|cribi|Naga_100002g103.4881
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:462514..464283 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100002g103gene1830Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1917rna1917-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28762.1cds1912Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1917 ID=rna1917|Name=rna1917|organism=Nannochloropsis gaditana|type=mRNA|length=806bp
CGCTTGTGTAGTATTAGTCAGAGAAAGCGGCGTGGATTTGGCCAGACTTA
TTGCAATCAAGGGCAGGCATTGATGGAAGCGCTAGCGTTTACGCCAGAGC
TTCGGGCTCCAGCTCCAGACTGCTCCGACATATGACTCACCTCCATCTCC
TGCACTGCTTTTCTACATAAGTACAGGATGGCGACTCCAATTGGTGGGCC
ACCTGTGCAAGATATCCCTCCGCCCGGTGGATATCCCAAGATCTTTTACA
AGACCCGGCTCGGGAATAGGGGCCCGCCGAGCTGGGCAATATGGACTGGC
GCCATCTTGGTGGTGTCCTATGGTTTTGTTCAAGTAGGGCGCACGAACAC
GGAACGCCGCTTTTGGTCGGACCAAAAGCGGGAGCAGAAACTGGCTCTGG
CCCCTTTGCTCCAAGCGGACGAGGACATGATTTGGATTGAGCGGCAAAAG
AAAGCCCTGGCCGAGGAGGCGGAGATTATGAAGCACGTCCCGGGGTGGAA
GGTGGGCGAAAGTGTATATAAGACGAACGTGACGTGGATCCCCCCATCGG
TATCGGCGTACAAGGGGGAGTGAGCGGGCAAGGGGACAGCCTGTTTCGAC
GGGCTCGGTGGAGGTTCGTGGGGGCGCGCGTCGATGTCCGTGGGGACTGT
GGGCCCTGTGTTGCAAGGGTGAATTAGAGAGAGTCCAGGGGGAGGAAATA
GTGAAGGAGGCAAGGAGCGTGCGCACGTGGAGGTTGTGCGCCTGCTCGTG
CGCGTGCTTCAGGCGGAAAGGAATGAGTAAACTGAAGCGAATTTGGCCAC
CTTGGG
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protein sequence of rna1917

>rna1917-protein ID=rna1917-protein|Name=rna1917|organism=Nannochloropsis gaditana|type=polypeptide|length=501bp
MAEDDDDPYLAELLDISDAEEGKAFAQRGSIATAAGTSTAALLAANTTRN
ASNSPSPSTGKSNVTYQASDTHRETLKLLSQLSPAGAKAPSAVDVRKAFR
ALYPPFQTNGANEGVKSNAKSSTSMVATIEKRECPCVAQLDVIQEELEVH
LDAVDLFDLRDVIKEEIDAWQAGKRKALAEMAGYGKSEKATCEEAEQFTG
DLDRKGGTSKGSEKHVGEDVEEPEGPVSQASLLDGGAQASQASQDTANGE
LKSGDVLKKRKRGSLAGGGRATLPLMVLKSARGGGGASRSLLIELDERDK
AQDLTGDSGAVGRVHVKKDRGVVLDLKGHQYLAELCRCPTMLLVSLGEEE
AKVEDVVDTLCVLTHHHDELEAMGGKVLRRGEEEEESVGGEESDYGLMGS
EGEGARAGKRMKAMKRTVSKRGSTGVGVRQAKRKSQGAARKGGASSAGAP
KRTGMHAKKQGPKRVSLRALKRPKPRKGSDVDEEEEEESFSDDDDDSDFS
V
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mRNA from alignment at CM002458.1:462514..464283+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1917 ID=rna1917|Name=rna1917|organism=Nannochloropsis gaditana|type=mRNA|length=1770bp|location=Sequence derived from alignment at CM002458.1:462514..464283+ (Nannochloropsis gaditana)
ATCTTAGGCGTCAAAATAAGATCCTAGTGCTGATCCGTCGGTATGAGAAT
GAATCTCTGGATTTCTTACTGAACACACTTGCCTCCTGACCATGTAAATT
AGGTTGCTCTGCCTTGGGCTTTTGGACATCTCTTCCCTTGTCAATTTTCC
CAGAATATTCCCATGGccgaagatgatgatgatcCTTATTTAGCTGAGCT
ACTAGATATATCTGATgcagaagaaggaaaagcctTTGCGCAAAGGGGCT
CAATTGCGACTGCCGCAGGCACGAGTACTGCCGCTCTCCTCGCGGCGAAT
ACCACCAGAAATGCATCaaattccccctccccgtcgacAGGAAAATCAAA
TGTGACATATCAAGCTTCTGACACACACCGGGAAACACTTAAACTTTTGT
CGCAGCTCAGTCCTGCGGGTGCTAAAGCTCCAAGTGCTGTGGACGTGCGG
AAAGCATTTCGTGCCCTGTATCCCCCTTTCCAGACAAACGGAGCCAATGA
GGGTGTCAAGAGCAACGCCAAGTCTAGCACATCCATGGTAGCGACGATCG
AAAAACGTGAATGCCCGTGCGTCGCACAGCTCGATGTGATACAGGAAGAG
TTGGAGGTGCATTTGGATGCGGTGGATTTGTTCGACCTCAGAGACGTCAT
TAAGGAGGAGATAGATGCCTGGCAGGCGGGAAAACggaaggccctggcgg
agaTGGCAGGATATGGAAAATCTGAGAAGGCAACGTGTGAAGAAGCCGAA
CAATTCACTGGCGACCtggacaggaagggaggtacgTCGAAGGGGTCAGA
GAAGcacgtgggagaggacgtaGAAGAGCCCGAGGGGCCCGTGTCCCAag
cgtccctcctcgacgggGGGGCTCAAGCTTCGCAGGCGTCTCAAGATACG
GCGAACGGCGAGCTCAAAAGCGGTGACGTCTTGAAAAAACGAAAGCGCGG
CTCCCTGGCAGGGGGCGGTCGCGCGACCTTGCCCTTGATGGTGCTCAAGT
CGGcacggggcggggggggtgcATCCCGTTCCCTATTAATAGAGCTGGAC
GAGCGCGATAAAGCCCAAGATCTGACCGGGGACAGCGGGGCGGTAGGACG
GGTGCACGTGaagaaggacaggggggTGGTGCTCGATCTGAAGGGGCATC
AGTACCTGGCGGAGCTCTGCCGGTGCCCGACCATGCTCCTCGTGAgcttg
ggggaggaggaggccaaggtagaggacgtggtggataCCTTGTGCGTCCT
CACGCATCATCACGACGAGCTCGaggcgatgggggggaaggtgctgcggc
ggggagaggaggaggaggagtctgttgggggggaggaatcggACTACGGC
CTCATGGGGagtgagggcgagggagccaGAGCCGGTAAACGCATGAAGGC
GATGAAAAGGACCGTGAGCAAACGCGGTAGCACCGGAGTCGGAGTAAGGC
AGgcaaagagaaagagccAGGGGGCCGCTCGAAAGGGCGGTGCGTCCTCA
GCAGGAGCCCCcaagaggacggggatgCATGCGAAGAAACAGGGCCCGAA
AAGGGTATCCTTGCGCGCGCTTAAGCGGCCAAAGCCAAGGAAGGGCTCAG
AtgtagacgaggaggaggaagaggagagctTTTCagacgatgacgacgat
AGTGATTTCAGCGTGTAACATTGCAAAGTACGCATAAGCCCTGTAAAGCA
CAGCACGTCATGCAACGTTTTATTTGATTCCATGCAAGATGACATTCACA
AGCCGCACAaacacccctcc
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Coding sequence (CDS) from alignment at CM002458.1:462514..464283+

>rna1917 ID=rna1917|Name=rna1917|organism=Nannochloropsis gaditana|type=CDS|length=1506bp|location=Sequence derived from alignment at CM002458.1:462514..464283+ (Nannochloropsis gaditana)
ATGGccgaagatgatgatgatcCTTATTTAGCTGAGCTACTAGATATATC
TGATgcagaagaaggaaaagcctTTGCGCAAAGGGGCTCAATTGCGACTG
CCGCAGGCACGAGTACTGCCGCTCTCCTCGCGGCGAATACCACCAGAAAT
GCATCaaattccccctccccgtcgacAGGAAAATCAAATGTGACATATCA
AGCTTCTGACACACACCGGGAAACACTTAAACTTTTGTCGCAGCTCAGTC
CTGCGGGTGCTAAAGCTCCAAGTGCTGTGGACGTGCGGAAAGCATTTCGT
GCCCTGTATCCCCCTTTCCAGACAAACGGAGCCAATGAGGGTGTCAAGAG
CAACGCCAAGTCTAGCACATCCATGGTAGCGACGATCGAAAAACGTGAAT
GCCCGTGCGTCGCACAGCTCGATGTGATACAGGAAGAGTTGGAGGTGCAT
TTGGATGCGGTGGATTTGTTCGACCTCAGAGACGTCATTAAGGAGGAGAT
AGATGCCTGGCAGGCGGGAAAACggaaggccctggcggagaTGGCAGGAT
ATGGAAAATCTGAGAAGGCAACGTGTGAAGAAGCCGAACAATTCACTGGC
GACCtggacaggaagggaggtacgTCGAAGGGGTCAGAGAAGcacgtggg
agaggacgtaGAAGAGCCCGAGGGGCCCGTGTCCCAagcgtccctcctcg
acgggGGGGCTCAAGCTTCGCAGGCGTCTCAAGATACGGCGAACGGCGAG
CTCAAAAGCGGTGACGTCTTGAAAAAACGAAAGCGCGGCTCCCTGGCAGG
GGGCGGTCGCGCGACCTTGCCCTTGATGGTGCTCAAGTCGGcacggggcg
gggggggtgcATCCCGTTCCCTATTAATAGAGCTGGACGAGCGCGATAAA
GCCCAAGATCTGACCGGGGACAGCGGGGCGGTAGGACGGGTGCACGTGaa
gaaggacaggggggTGGTGCTCGATCTGAAGGGGCATCAGTACCTGGCGG
AGCTCTGCCGGTGCCCGACCATGCTCCTCGTGAgcttgggggaggaggag
gccaaggtagaggacgtggtggataCCTTGTGCGTCCTCACGCATCATCA
CGACGAGCTCGaggcgatgggggggaaggtgctgcggcggggagaggagg
aggaggagtctgttgggggggaggaatcggACTACGGCCTCATGGGGagt
gagggcgagggagccaGAGCCGGTAAACGCATGAAGGCGATGAAAAGGAC
CGTGAGCAAACGCGGTAGCACCGGAGTCGGAGTAAGGCAGgcaaagagaa
agagccAGGGGGCCGCTCGAAAGGGCGGTGCGTCCTCAGCAGGAGCCCCc
aagaggacggggatgCATGCGAAGAAACAGGGCCCGAAAAGGGTATCCTT
GCGCGCGCTTAAGCGGCCAAAGCCAAGGAAGGGCTCAGAtgtagacgagg
aggaggaagaggagagctTTTCagacgatgacgacgatAGTGATTTCAGC
GTGTAA
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Synonyms
Publications