EWM28762.1, cds1912 (CDS) Nannochloropsis gaditana

Overview
NameEWM28762.1
Unique Namecds1912
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:462676..464181 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28762.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100002g103.4881.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:462676..464181 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0007049cell cycle
GO:0009058biosynthetic process
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Homology
BLAST of EWM28762.1 vs. NCBI_GenBank
Match: gi|585111185|gb|EWM28762.1| (hypothetical protein Naga_100002g103 [Nannochloropsis gaditana])

HSP 1 Score: 1005.74 bits (2599), Expect = 0.000e+0
Identity = 501/501 (100.00%), Postives = 501/501 (100.00%), Query Frame = 0
Query:    1 MAEDDDDPYLAELLDISDAEEGKAFAQRGSIATAAGTSTAALLAANTTRNASNSPSPSTGKSNVTYQASDTHRETLKLLSQLSPAGAKAPSAVDVRKAFRALYPPFQTNGANEGVKSNAKSSTSMVATIEKRECPCVAQLDVIQEELEVHLDAVDLFDLRDVIKEEIDAWQAGKRKALAEMAGYGKSEKATCEEAEQFTGDLDRKGGTSKGSEKHVGEDVEEPEGPVSQASLLDGGAQASQASQDTANGELKSGDVLKKRKRGSLAGGGRATLPLMVLKSARGGGGASRSLLIELDERDKAQDLTGDSGAVGRVHVKKDRGVVLDLKGHQYLAELCRCPTMLLVSLGEEEAKVEDVVDTLCVLTHHHDELEAMGGKVLRRGEEEEESVGGEESDYGLMGSEGEGARAGKRMKAMKRTVSKRGSTGVGVRQAKRKSQGAARKGGASSAGAPKRTGMHAKKQGPKRVSLRALKRPKPRKGSDVDEEEEEESFSDDDDDSDFSV 501
            MAEDDDDPYLAELLDISDAEEGKAFAQRGSIATAAGTSTAALLAANTTRNASNSPSPSTGKSNVTYQASDTHRETLKLLSQLSPAGAKAPSAVDVRKAFRALYPPFQTNGANEGVKSNAKSSTSMVATIEKRECPCVAQLDVIQEELEVHLDAVDLFDLRDVIKEEIDAWQAGKRKALAEMAGYGKSEKATCEEAEQFTGDLDRKGGTSKGSEKHVGEDVEEPEGPVSQASLLDGGAQASQASQDTANGELKSGDVLKKRKRGSLAGGGRATLPLMVLKSARGGGGASRSLLIELDERDKAQDLTGDSGAVGRVHVKKDRGVVLDLKGHQYLAELCRCPTMLLVSLGEEEAKVEDVVDTLCVLTHHHDELEAMGGKVLRRGEEEEESVGGEESDYGLMGSEGEGARAGKRMKAMKRTVSKRGSTGVGVRQAKRKSQGAARKGGASSAGAPKRTGMHAKKQGPKRVSLRALKRPKPRKGSDVDEEEEEESFSDDDDDSDFSV
Sbjct:    1 MAEDDDDPYLAELLDISDAEEGKAFAQRGSIATAAGTSTAALLAANTTRNASNSPSPSTGKSNVTYQASDTHRETLKLLSQLSPAGAKAPSAVDVRKAFRALYPPFQTNGANEGVKSNAKSSTSMVATIEKRECPCVAQLDVIQEELEVHLDAVDLFDLRDVIKEEIDAWQAGKRKALAEMAGYGKSEKATCEEAEQFTGDLDRKGGTSKGSEKHVGEDVEEPEGPVSQASLLDGGAQASQASQDTANGELKSGDVLKKRKRGSLAGGGRATLPLMVLKSARGGGGASRSLLIELDERDKAQDLTGDSGAVGRVHVKKDRGVVLDLKGHQYLAELCRCPTMLLVSLGEEEAKVEDVVDTLCVLTHHHDELEAMGGKVLRRGEEEEESVGGEESDYGLMGSEGEGARAGKRMKAMKRTVSKRGSTGVGVRQAKRKSQGAARKGGASSAGAPKRTGMHAKKQGPKRVSLRALKRPKPRKGSDVDEEEEEESFSDDDDDSDFSV 501          
BLAST of EWM28762.1 vs. NCBI_GenBank
Match: gi|553186509|ref|XP_005854432.1| (hypothetical protein NGA_2017520, partial [Nannochloropsis gaditana CCMP526] >gi|422294628|gb|EKU21928.1| hypothetical protein NGA_2017520, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 472.241 bits (1214), Expect = 6.796e-164
Identity = 238/238 (100.00%), Postives = 238/238 (100.00%), Query Frame = 0
Query:  264 SLAGGGRATLPLMVLKSARGGGGASRSLLIELDERDKAQDLTGDSGAVGRVHVKKDRGVVLDLKGHQYLAELCRCPTMLLVSLGEEEAKVEDVVDTLCVLTHHHDELEAMGGKVLRRGEEEEESVGGEESDYGLMGSEGEGARAGKRMKAMKRTVSKRGSTGVGVRQAKRKSQGAARKGGASSAGAPKRTGMHAKKQGPKRVSLRALKRPKPRKGSDVDEEEEEESFSDDDDDSDFSV 501
            SLAGGGRATLPLMVLKSARGGGGASRSLLIELDERDKAQDLTGDSGAVGRVHVKKDRGVVLDLKGHQYLAELCRCPTMLLVSLGEEEAKVEDVVDTLCVLTHHHDELEAMGGKVLRRGEEEEESVGGEESDYGLMGSEGEGARAGKRMKAMKRTVSKRGSTGVGVRQAKRKSQGAARKGGASSAGAPKRTGMHAKKQGPKRVSLRALKRPKPRKGSDVDEEEEEESFSDDDDDSDFSV
Sbjct:    1 SLAGGGRATLPLMVLKSARGGGGASRSLLIELDERDKAQDLTGDSGAVGRVHVKKDRGVVLDLKGHQYLAELCRCPTMLLVSLGEEEAKVEDVVDTLCVLTHHHDELEAMGGKVLRRGEEEEESVGGEESDYGLMGSEGEGARAGKRMKAMKRTVSKRGSTGVGVRQAKRKSQGAARKGGASSAGAPKRTGMHAKKQGPKRVSLRALKRPKPRKGSDVDEEEEEESFSDDDDDSDFSV 238          
BLAST of EWM28762.1 vs. NCBI_GenBank
Match: gi|698822389|ref|XP_009844223.1| (hypothetical protein H257_17218 [Aphanomyces astaci] >gi|574100743|gb|ETV66317.1| hypothetical protein H257_17218 [Aphanomyces astaci])

HSP 1 Score: 79.337 bits (194), Expect = 1.717e-13
Identity = 46/118 (38.98%), Postives = 70/118 (59.32%), Query Frame = 0
Query:  271 ATLPLMVLKSARGGGGASRSLLIELDERDKAQDLTGDSGAVGRVHVKKDRG-VVLDLKGHQYLAELCRCPTMLLVSLGEEEAKVEDVVDTLCVLTHHHDELEAMGGKVLRRGEEEEES 387
            +TLPL++  S      +  ++L++LD  D   DL+GD GA+GR HV      V+LDLKG QY+  +  C + L+VS+G  EAKV+ +V+ +C  T H + L  M G V     +EE++
Sbjct:   48 STLPLVLPPSF----PSRTTVLVQLD--DSTMDLSGDVGAIGRFHVHDTMSQVLLDLKGEQYVGHVIPCNSYLVVSMGATEAKVDCLVNDVCHATKHRNVLNLMKGVVTAGTWKEEDA 159          
BLAST of EWM28762.1 vs. NCBI_GenBank
Match: gi|299471419|emb|CBN79372.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 78.5666 bits (192), Expect = 7.071e-13
Identity = 45/111 (40.54%), Postives = 69/111 (62.16%), Query Frame = 0
Query:  287 ASRSLLIELDERDKAQDLTGDSGAVGRVHV---KKDRGVVLDLKGHQYLAELCRCPTMLLVSLGEEEAKVEDVVDTLCVLTHHHDELEAMGGKVLRRGEEEEESVGGEESD 394
            A  SLL+ L  RD+A +  GD+GA+GR+ V   KK RG+  DLKG Q+  ++    T+++V +G+ EAKVE +   +C L +  +  +AMGG+VL+   E ++S   EE D
Sbjct:   71 AKASLLVHL--RDEALNFAGDTGAIGRISVGGKKKGRGLTFDLKGQQFSGQIIPSATVMVVGIGKTEAKVEGLFSEVCRLDYKGNVFDAMGGEVLKG--EMDDSYKFEEED 177          
The following BLAST results are available for this feature:
BLAST of EWM28762.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 4
Match NameE-valueIdentityDescription
gi|585111185|gb|EWM28762.1|0.000e+0100.00hypothetical protein Naga_100002g103 [Nannochlorop... [more]
gi|553186509|ref|XP_005854432.1|6.796e-164100.00hypothetical protein NGA_2017520, partial [Nannoch... [more]
gi|698822389|ref|XP_009844223.1|1.717e-1338.98hypothetical protein H257_17218 [Aphanomyces astac... [more]
gi|299471419|emb|CBN79372.1|7.071e-1340.54conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1917rna1917Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications