EWM28762.1, cds1912 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28762.1 vs. NCBI_GenBank
Match: gi|585111185|gb|EWM28762.1| (hypothetical protein Naga_100002g103 [Nannochloropsis gaditana]) HSP 1 Score: 1005.74 bits (2599), Expect = 0.000e+0 Identity = 501/501 (100.00%), Postives = 501/501 (100.00%), Query Frame = 0
Query: 1 MAEDDDDPYLAELLDISDAEEGKAFAQRGSIATAAGTSTAALLAANTTRNASNSPSPSTGKSNVTYQASDTHRETLKLLSQLSPAGAKAPSAVDVRKAFRALYPPFQTNGANEGVKSNAKSSTSMVATIEKRECPCVAQLDVIQEELEVHLDAVDLFDLRDVIKEEIDAWQAGKRKALAEMAGYGKSEKATCEEAEQFTGDLDRKGGTSKGSEKHVGEDVEEPEGPVSQASLLDGGAQASQASQDTANGELKSGDVLKKRKRGSLAGGGRATLPLMVLKSARGGGGASRSLLIELDERDKAQDLTGDSGAVGRVHVKKDRGVVLDLKGHQYLAELCRCPTMLLVSLGEEEAKVEDVVDTLCVLTHHHDELEAMGGKVLRRGEEEEESVGGEESDYGLMGSEGEGARAGKRMKAMKRTVSKRGSTGVGVRQAKRKSQGAARKGGASSAGAPKRTGMHAKKQGPKRVSLRALKRPKPRKGSDVDEEEEEESFSDDDDDSDFSV 501
MAEDDDDPYLAELLDISDAEEGKAFAQRGSIATAAGTSTAALLAANTTRNASNSPSPSTGKSNVTYQASDTHRETLKLLSQLSPAGAKAPSAVDVRKAFRALYPPFQTNGANEGVKSNAKSSTSMVATIEKRECPCVAQLDVIQEELEVHLDAVDLFDLRDVIKEEIDAWQAGKRKALAEMAGYGKSEKATCEEAEQFTGDLDRKGGTSKGSEKHVGEDVEEPEGPVSQASLLDGGAQASQASQDTANGELKSGDVLKKRKRGSLAGGGRATLPLMVLKSARGGGGASRSLLIELDERDKAQDLTGDSGAVGRVHVKKDRGVVLDLKGHQYLAELCRCPTMLLVSLGEEEAKVEDVVDTLCVLTHHHDELEAMGGKVLRRGEEEEESVGGEESDYGLMGSEGEGARAGKRMKAMKRTVSKRGSTGVGVRQAKRKSQGAARKGGASSAGAPKRTGMHAKKQGPKRVSLRALKRPKPRKGSDVDEEEEEESFSDDDDDSDFSV
Sbjct: 1 MAEDDDDPYLAELLDISDAEEGKAFAQRGSIATAAGTSTAALLAANTTRNASNSPSPSTGKSNVTYQASDTHRETLKLLSQLSPAGAKAPSAVDVRKAFRALYPPFQTNGANEGVKSNAKSSTSMVATIEKRECPCVAQLDVIQEELEVHLDAVDLFDLRDVIKEEIDAWQAGKRKALAEMAGYGKSEKATCEEAEQFTGDLDRKGGTSKGSEKHVGEDVEEPEGPVSQASLLDGGAQASQASQDTANGELKSGDVLKKRKRGSLAGGGRATLPLMVLKSARGGGGASRSLLIELDERDKAQDLTGDSGAVGRVHVKKDRGVVLDLKGHQYLAELCRCPTMLLVSLGEEEAKVEDVVDTLCVLTHHHDELEAMGGKVLRRGEEEEESVGGEESDYGLMGSEGEGARAGKRMKAMKRTVSKRGSTGVGVRQAKRKSQGAARKGGASSAGAPKRTGMHAKKQGPKRVSLRALKRPKPRKGSDVDEEEEEESFSDDDDDSDFSV 501
BLAST of EWM28762.1 vs. NCBI_GenBank
Match: gi|553186509|ref|XP_005854432.1| (hypothetical protein NGA_2017520, partial [Nannochloropsis gaditana CCMP526] >gi|422294628|gb|EKU21928.1| hypothetical protein NGA_2017520, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 472.241 bits (1214), Expect = 6.796e-164 Identity = 238/238 (100.00%), Postives = 238/238 (100.00%), Query Frame = 0
Query: 264 SLAGGGRATLPLMVLKSARGGGGASRSLLIELDERDKAQDLTGDSGAVGRVHVKKDRGVVLDLKGHQYLAELCRCPTMLLVSLGEEEAKVEDVVDTLCVLTHHHDELEAMGGKVLRRGEEEEESVGGEESDYGLMGSEGEGARAGKRMKAMKRTVSKRGSTGVGVRQAKRKSQGAARKGGASSAGAPKRTGMHAKKQGPKRVSLRALKRPKPRKGSDVDEEEEEESFSDDDDDSDFSV 501
SLAGGGRATLPLMVLKSARGGGGASRSLLIELDERDKAQDLTGDSGAVGRVHVKKDRGVVLDLKGHQYLAELCRCPTMLLVSLGEEEAKVEDVVDTLCVLTHHHDELEAMGGKVLRRGEEEEESVGGEESDYGLMGSEGEGARAGKRMKAMKRTVSKRGSTGVGVRQAKRKSQGAARKGGASSAGAPKRTGMHAKKQGPKRVSLRALKRPKPRKGSDVDEEEEEESFSDDDDDSDFSV
Sbjct: 1 SLAGGGRATLPLMVLKSARGGGGASRSLLIELDERDKAQDLTGDSGAVGRVHVKKDRGVVLDLKGHQYLAELCRCPTMLLVSLGEEEAKVEDVVDTLCVLTHHHDELEAMGGKVLRRGEEEEESVGGEESDYGLMGSEGEGARAGKRMKAMKRTVSKRGSTGVGVRQAKRKSQGAARKGGASSAGAPKRTGMHAKKQGPKRVSLRALKRPKPRKGSDVDEEEEEESFSDDDDDSDFSV 238
BLAST of EWM28762.1 vs. NCBI_GenBank
Match: gi|698822389|ref|XP_009844223.1| (hypothetical protein H257_17218 [Aphanomyces astaci] >gi|574100743|gb|ETV66317.1| hypothetical protein H257_17218 [Aphanomyces astaci]) HSP 1 Score: 79.337 bits (194), Expect = 1.717e-13 Identity = 46/118 (38.98%), Postives = 70/118 (59.32%), Query Frame = 0
Query: 271 ATLPLMVLKSARGGGGASRSLLIELDERDKAQDLTGDSGAVGRVHVKKDRG-VVLDLKGHQYLAELCRCPTMLLVSLGEEEAKVEDVVDTLCVLTHHHDELEAMGGKVLRRGEEEEES 387
+TLPL++ S + ++L++LD D DL+GD GA+GR HV V+LDLKG QY+ + C + L+VS+G EAKV+ +V+ +C T H + L M G V +EE++
Sbjct: 48 STLPLVLPPSF----PSRTTVLVQLD--DSTMDLSGDVGAIGRFHVHDTMSQVLLDLKGEQYVGHVIPCNSYLVVSMGATEAKVDCLVNDVCHATKHRNVLNLMKGVVTAGTWKEEDA 159
BLAST of EWM28762.1 vs. NCBI_GenBank
Match: gi|299471419|emb|CBN79372.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 78.5666 bits (192), Expect = 7.071e-13 Identity = 45/111 (40.54%), Postives = 69/111 (62.16%), Query Frame = 0
Query: 287 ASRSLLIELDERDKAQDLTGDSGAVGRVHV---KKDRGVVLDLKGHQYLAELCRCPTMLLVSLGEEEAKVEDVVDTLCVLTHHHDELEAMGGKVLRRGEEEEESVGGEESD 394
A SLL+ L RD+A + GD+GA+GR+ V KK RG+ DLKG Q+ ++ T+++V +G+ EAKVE + +C L + + +AMGG+VL+ E ++S EE D
Sbjct: 71 AKASLLVHL--RDEALNFAGDTGAIGRISVGGKKKGRGLTFDLKGQQFSGQIIPSATVMVVGIGKTEAKVEGLFSEVCRLDYKGNVFDAMGGEVLKG--EMDDSYKFEEED 177 The following BLAST results are available for this feature:
BLAST of EWM28762.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 4
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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