rna1915, rna1915 (mRNA) Nannochloropsis gaditana

Overview
Namerna1915
Unique Namerna1915
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2079
Alignment locationCM002458.1:459688..461141 +

Link to JBrowse

Properties
Property NameValue
Productuncharacterized protein
Orig transcript idgnl|cribi|Naga_100002g105.4807.mrna
Orig protein idgnl|cribi|Naga_100002g105.4807
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:459688..461141 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100002g105gene1828Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1915rna1915-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28688.1cds1910Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1915 ID=rna1915|Name=rna1915|organism=Nannochloropsis gaditana|type=mRNA|length=2079bp
GCTGCACGTGTAGAACATGCGCCCCAATGCACTTGTGTATCCATAAGATT
CCCACAAACGTGACCACGGCTCCCCACCACAGTTTGCAAGTCGGACAGCA
TCCACACCCATGCTCATTTGAGTGGCCGGGTATTGTGAGGCACTGGCTTG
TCGACTAGTTTTTGCCCCTTCAAGATCGAGCGTCGCTTTTTTGACATGCG
CACATCCACATCTGCCGTGCGAAGCTCCGATGCTTCCGAGGAGACTCGCG
TAGCACCGGCTGCCCTAAGAAGCCTACAAGCGCACGCACCAAATGAAGAT
TCATTGCCCGTATCTCCCTTGGGGAGCAGGGCCGATTCAACAATGCCCTC
TTCGGCTGCGAATGATCATCATTCGTGCCCCCCCGCCCCGTCCGCCTCGG
CACCCCTATCCACCGTCAACCACCTGGAAACGTTGCGCGGGCGAGGTAAT
TGCAGTACATGTACGACTTGTAGCGTCATGAGCAGCGATCTGAGCATCAA
CAGCATGGCGAGTGATGACGATGGGGCTCAAGACGAGGAGGACGACGAGG
AATTGGCAGGCGGGAATGGTGGTACAGAGGAAGATGCCAAACATAAGTTC
CGTTTGAAGGTCCTAAATTTCAATGTGTTTGCAGGCAGCCCTATCCCAAT
GTGTTTCCAAAGCGTGACTCCCAAGACTGCATCCCTGGAGGGCTCCGAGC
GCCTCAAGCTCCAGGTGGAGCGCATCCGGGCCCTGGGGCCGGACATTATC
TGCTTGCAGGAGGCCTGCTCGGACGGCGTGGAGAGATACTACCGCGAGGC
GTTTGCCGACTTGTACGACAGCTTCTTCGAGGAGCACCCCCCCGAAACGC
TCGGCAAGCTGACCCTGGGTTTTGTCTACCTGGTGATGGCCACGGTCCTG
GCCTTTTGTTTCCATTGCGTGCTAGATTTATGGGCCTCGTCTCTGACGCT
AATCATCCCCTTCGGTCCATCTGTCTCTTCTACCTTTGCGCTTCCCTCCC
TTTTCTCCTCGTTCAAGCCTCACCACTGGTCGCGAGATGATCCCTACGAC
TCAACACGGCTTTTGCTGGTACTCGCGCTCGTGGGGAAGGGTTTGGGAGT
GGCGGTCTGGTCCATGCGTAAGACCTGCCTGGTGGGGTTTCTCCAGGGCC
AGGTGAAGGCGTCCACCGTCATTCTCTGGCGGCGAGATCGCTTCTCGGTG
GTGTACAACAAGGACCCCGTCACTCAAGCCTTGGTCCCCGCCGAGATGCG
GACCACATTCTTCCAGGAGCAACGCGGGGACTGGTTGAACCTTGTCCGGC
CCCGGGGGTATCTCACTGCCCAGCTCTTGTTTCACGGGATGCCCTTGTAC
ATCGTGAACACACACCTGAACCTCGGACAGCAAGTCTTCCGACGGCGACA
GGTGGAAGAGCTGACGCAGCATTGCAAGAGCCTCTCCCAGGTGGGCTCTG
TCGTGCTGTGCGGAGACTTCAACGTGACCCCGGAGAGCGAAGAAATCCAG
CTCTTGTCCAAACAGGCAGGCGTCAAAGATGCGCTGCTGGAGAAGGGATG
TTCAGAGCCAACTTGGTCGAGCAGGAATCCGCTAACGCACGGTGTACTGC
TTGAAGAGGACCATCGTTGCGATTTTATTTTTTACAAGGGCTTGGCGCGG
CAGCACCGCATGGTGAATCGGCGCTGTCGACTCGACGTCCCGTTCTGGGG
AAATACCTGGCTAAGTGACCATTTTGGGATCGTGCTTGATATGATTTTGG
AGCCTGTACTGGCTTAACTTTATGTTGGGTCGCAACGCGTGCATCGGGGA
CGCGATGAAGGGCTACTCGAGAGATTCAACTGTTCTCTGTTCCCCTGCAC
CTGTCTTTTTTTCTTAATAAATTGTGGATCGGAATGGTAGGCAAGCACTA
GGCATCGGCCGTGGGAACGTGTCCTTTGTTGGACTATAGTATCAGAAATA
GAAATCACAGAAGAGAATAGCAAAAATGAGTAAAATGTACGTGTACCCGA
ATGGGAACATGACTAGTGGTGTGGAAAGTTTGGGCGCCTTTCGAAACTTA
AAAAATAAATCAAATGCAGATGACAATCT
back to top

protein sequence of rna1915

>rna1915-protein ID=rna1915-protein|Name=rna1915|organism=Nannochloropsis gaditana|type=polypeptide|length=342bp
MAVWAWPDVLWLSALVTAALQLLTFLVAYLFQFDKLTDISGASNFVLLGW
LSYGLGGHSYSRQTTNTVLLTVWGARLGSYLLLRVVRRGHDARFDEMRAS
FVRFGSFFVFQAFWVFLVTMPILLSNSAPQDVDLGGRDYAGWTLFTLGFL
VEVWADQSKDAFHEQRRTAPLASARGIITTGPWAWSRHPNYWGEITLWLG
LFLTSSRAFDAPNNLPGAYAAAVISPIFTFLILVFLSGCPLAEERYNERH
GSEPWYLAYRTQTSPLLPLPPLIYRPLPLWLKRYALLELAMFEKGLPAGA
GGGDGGLGGRGGDNRAGGPVHVYQGSPNKTTDLIGHSSAPEV
back to top

mRNA from alignment at CM002458.1:459688..461141+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1915 ID=rna1915|Name=rna1915|organism=Nannochloropsis gaditana|type=mRNA|length=1454bp|location=Sequence derived from alignment at CM002458.1:459688..461141+ (Nannochloropsis gaditana)
TGCGAGGGAATGCCGGGTGCAGGTGACGACAAGGgcggagcgagagggag
tCCACGGCCCCGGTtcaaggaggctttggggCATACGCGGTCACGCCCAC
GccgctttttttccccgtcGGGGCAATTTTCAGCCACGGTCGTCCCGAAA
TCCACCTTGAAAGGAGCTTTGTGTTTGCATCCTTGACATGCGTACAGCAT
GTTGGCGTTGGAATATTTTCACCGCACCACGTAGTACTTCTCTCGCGATT
AGGCTTGTCCAGAAGACTGGACCCGTTTCTACCAGGCACCAAGTTTCTCC
TATAAACATACAAGAGCGCAAGTTTCACCATTTTCATTTGTACATTTTTA
TTCTTAAAGGGAATGGCAGTTTGGGCATGGCCTGATGTCCTGTGGCTCTC
GGCGCTGGTGACGGCGGCCTTGCAGCTCCTCACGTTTCTAGTTGCTTACC
TTTTTCAGTTCGACAAGCTGACCGACATATCAGGGGCTTCGAATTTCGTG
TTGTTGGGGTGGCTATCGTACGGTCTGGGAGGACATAGTTATTCCCGTCA
AACCACAAACACGGTCCTATTAACAGTATGGGGTGCGAGATTGGGCTCGT
ACCTATTGCTTCGAGTCGTGCGACGCGGGCACGACGCCCGCTTCGACGAG
ATGCGAGCAAGCTTTGTCCGCTTTGGCTCATTCTTCGTATTCCAAGCCTT
TTGGGTGTTTCTAGTCACGATGCCCATCCTTTTGAGCAATTCTGCGCCTC
AGGACGTGGACTTGGGTGGTCGTGATTACGCCGGATGGACCCTCTTTACC
CTGGGGTTTCTGGTTGAAGTTTGGGCCGACCAGAGCAAGGACGCCTTTCA
CGAACAGAGGCGGACCGCTCCTCTCGCCTCCGCGCGCGGCATCATCACCA
CGGGGCCCTGGGCCTGGTCCCGGCACCCGAACTACTGGGGCGAGATCACC
CTCTGGCTCGGCCTcttccttacctcctcccgtgCCTTCGACGCCCCTAA
CAACCTGCCGGGCGCCTATGCCGCAGCGGTGATCAGTCCCATCTTCACCT
TTCTCATTCTCGTATTCCTCTCGGGCTGCCCACTGGCTGAAGAGCGATAC
AACGAGCGGCACGGATCGGAGCCGTGGTACCTGGCCTATCGGACCCAGAc
ctctccgcttcttcccctccctcctctcatctaccgccccctccccctgt
ggCTCAAGCGCTATGCCCTCCTTGAACTAGCCATGTTTGAAAAGGGACtg
ccggcgggggcgggagggggagacggggggttgggaggacgcggggggga
cAACAGGGCTGGAGGGCCCGTGCACGTCTATCAAGGGAGCCCGAACAAGA
CGACCGACCTGATCGGGCATTCATCCGCCCCGGAAGTGTAAAGAGAACAG
AACTGTCCATACTAACAGATAAAGCATTGTATAGAACGGATACCCAAGGT
GGCC
back to top

Coding sequence (CDS) from alignment at CM002458.1:459688..461141+

>rna1915 ID=rna1915|Name=rna1915|organism=Nannochloropsis gaditana|type=CDS|length=1029bp|location=Sequence derived from alignment at CM002458.1:459688..461141+ (Nannochloropsis gaditana)
ATGGCAGTTTGGGCATGGCCTGATGTCCTGTGGCTCTCGGCGCTGGTGAC
GGCGGCCTTGCAGCTCCTCACGTTTCTAGTTGCTTACCTTTTTCAGTTCG
ACAAGCTGACCGACATATCAGGGGCTTCGAATTTCGTGTTGTTGGGGTGG
CTATCGTACGGTCTGGGAGGACATAGTTATTCCCGTCAAACCACAAACAC
GGTCCTATTAACAGTATGGGGTGCGAGATTGGGCTCGTACCTATTGCTTC
GAGTCGTGCGACGCGGGCACGACGCCCGCTTCGACGAGATGCGAGCAAGC
TTTGTCCGCTTTGGCTCATTCTTCGTATTCCAAGCCTTTTGGGTGTTTCT
AGTCACGATGCCCATCCTTTTGAGCAATTCTGCGCCTCAGGACGTGGACT
TGGGTGGTCGTGATTACGCCGGATGGACCCTCTTTACCCTGGGGTTTCTG
GTTGAAGTTTGGGCCGACCAGAGCAAGGACGCCTTTCACGAACAGAGGCG
GACCGCTCCTCTCGCCTCCGCGCGCGGCATCATCACCACGGGGCCCTGGG
CCTGGTCCCGGCACCCGAACTACTGGGGCGAGATCACCCTCTGGCTCGGC
CTcttccttacctcctcccgtgCCTTCGACGCCCCTAACAACCTGCCGGG
CGCCTATGCCGCAGCGGTGATCAGTCCCATCTTCACCTTTCTCATTCTCG
TATTCCTCTCGGGCTGCCCACTGGCTGAAGAGCGATACAACGAGCGGCAC
GGATCGGAGCCGTGGTACCTGGCCTATCGGACCCAGAcctctccgcttct
tcccctccctcctctcatctaccgccccctccccctgtggCTCAAGCGCT
ATGCCCTCCTTGAACTAGCCATGTTTGAAAAGGGACtgccggcgggggcg
ggagggggagacggggggttgggaggacgcgggggggacAACAGGGCTGG
AGGGCCCGTGCACGTCTATCAAGGGAGCCCGAACAAGACGACCGACCTGA
TCGGGCATTCATCCGCCCCGGAAGTGTAA
back to top
Synonyms
Publications