rna1914, rna1914 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1914
Unique Name	rna1914
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	882
Alignment location	CM002458.1:457314..459514 -

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Properties


Property Name	Value
Product	Endonuclease/exonuclease/phosphatase
Orig transcript id	gnl\|cribi\|Naga_100002g106.4805.mrna
Orig protein id	gnl\|cribi\|Naga_100002g106.4805
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:457314..459514 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100002g106	gene1827	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1914	rna1914-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28686.1	cds1909	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:457314..459514-
coding sequence from alignment at CM002458.1:457314..459514-

mRNA sequence

>rna1914 ID=rna1914|Name=rna1914|organism=Nannochloropsis gaditana|type=mRNA|length=882bp
GAACAATAAGCTGAGCGACTCATTTCACCTTCACGTACTCTGTATATGGT
GTTAAGCTTCACTCGTGAGGCATAGACTGGAGGATGTGGAGGCCCGGGGC
TCGCAAGCCGGGACGGCCCTCTGCAGGCGGGAAGGCGGCTGGGAGCGCTC
CGGCGGCAGAAGTATCTCCCACACCCACCAATTCCGCTCCCAAGGGAAGA
ATATTGAGCGCTTCGACCTTGGGTATGAAATTCATGCAAAAGCGTATGCA
AAAGGATGCCGAAATGAAGCAGCAGGCAGAGCAGGCCATGGCAGCCAAAG
CTGCGAAATGGACACTGGAGCATGAAACACGGCAAGCGGAGAAAGGCGCG
TCTACAAAGGCACAGGACAAAAACACCATTTCGCAAACATTGCAACCAGA
GCAGAAGCAGAGCAGTGATTCGTTACAGTTAAAAAGGTCACGTACGATGG
TTTTTGAAAACGAGGAAACGGATCCGAGAACTCAAGTCCTGGGGCGACGG
GCATTCGGGGGGTTCAATGAAGTGGTGGCCAGAATGTTTGAGCAGAACCT
TCAATTACTGGGGTTGCGCAAAGGAAAGCGGAGACGTGGAGATGACGACG
CAGACGAGAAAGAGGTGAATGAACACGAGATGGTGGAGCGCTACCGGCGG
CACGGCAATCTACCTGTCAAGCGAGACAGTAACAAAGGCTCTGAGGCATC
CAGGGGCGGCGGGGGGAAGAGGGGGCGATACGCTTACCAGCAGCCGAAAC
AGAAAATGCGGGGTAGCTAAAGATGTATGGATTCGCATTGTAGCGTGTTG
AATACAAGGTGGCAAGCGGAGTGTAAATGACTTTGAGTAAATAGCGAAGA
GAAAAGCAATCAATTATGTTCACATGTACCGA

protein sequence of rna1914

>rna1914-protein ID=rna1914-protein|Name=rna1914|organism=Nannochloropsis gaditana|type=polypeptide|length=523bp
MRTSTSAVRSSDASEETRVAPAALRSLQAHAPNEDSLPVSPLGSRADSTM
PSSAANDHHSCPPAPSASAPLSTVNHLETLRGRGNCSTCTTCSVMSSDLS
INSMASDDDGAQDEEDDEELAGGNGGTEEDAKHKFRLKVLNFNVFAGSPI
PMCFQSVTPKTASLEGSERLKLQVERIRALGPDIICLQEACSDGVERYYR
EAFADLYDSFFEEHPPETLGKLTLGFVYLVMATVLAFCFHCVLDLWASSL
TLIIPFGPSVSSTFALPSLFSSFKPHHWSRDDPYDSTRLLLVLALVGKGL
GVAVWSMRKTCLVGFLQGQVKASTVILWRRDRFSVVYNKDPVTQALVPAE
MRTTFFQEQRGDWLNLVRPRGYLTAQLLFHGMPLYIVNTHLNLGQQVFRR
RQVEELTQHCKSLSQVGSVVLCGDFNVTPESEEIQLLSKQAGVKDALLEK
GCSEPTWSSRNPLTHGVLLEEDHRCDFIFYKGLARQHRMVNRRCRLDVPF
WGNTWLSDHFGIVLDMILEPVLA

mRNA from alignment at CM002458.1:457314..459514-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1914 ID=rna1914|Name=rna1914|organism=Nannochloropsis gaditana|type=mRNA|length=2201bp|location=Sequence derived from alignment at CM002458.1:457314..459514- (Nannochloropsis gaditana)
GCTGCACGTGTAGAACATGCGCCCCAATGCACTTGTGTATCCATAAGATT
CCCACAAACGTGACCACGGCTCCCCACCACAGTTTGCAAGTCGGACAGCA
TCCACACCCATGCTCATTTGAGTGGCCGGGTATTGTGAGGCACTGGCTTG
TCGACTAGTTTTTGCCCCTTCAAGATCGAGCGTCGCTTTTTTGACATGCG
CACATCCACATCTGCCGTGCGAAGCTCCGATGCTTCCGAGGAGACTCGCG
TAGCACCGGCTGCCCTAAGAAGCCTACAAGCGCACGCACCAAATGAAGAT
TCATTGCCCGTATCTCCCTTGGGGAGCAGGGCCGATTCAACAATGCCCTC
TTCGGCTGCGAATGATCATCATTCGTGCCCCCCCGCCCCGTCCGCCTCGG
CACCCCTATCCACCGTCAACCACCTGGAAACGTTGCGCGGGCGAGGTAAT
TGCAGTACATGTACGACTTGTAGCGTCATGAGCAGCGATCTGAGCATCAA
CAGCATGGCGAGTGATGACGATGGGGCTCAAGACGAGGAGGACGACGAGG
AATTGGCAGGCGGGAATGGTGGTACAGAGGAAGATGCCAAACATAAGTTC
CGTTTGAAGGTCCTAAATTTCAATGTGTTTGCAGGCAGCCCTATCCCAAT
GTGTTTCCAAAGCGTGACTCCCAAGACTGCATCCCTGGAGGGCTCCGAGC
GCCTCAAGCTCCAGGTGGAGCGCATCCGGGCCCTGGGGCCGGACATTATC
TGCTTGCAGGAGGCCTGCTCGGACGGCGTGGAGAGGTGCGTGGGGACGTG
CCAGGGGGTGGCTATGCTCCCGTGATGTGTGTGTGCCATTCGTTGAACCC
GGAAGTGATGTTTCTGACCTCGCGTACCCCACCCTGCCACGTGCTTCCCA
TCCCCAGATACTACCGCGAGGCGTTTGCCGACTTGTACGACAGCTTCTTC
GAGGAGCACCCCCCCGAAACGCTCGGCAAGCTGACCCTGGGTTTTGTCTA
CCTGGTGATGGCCACGGTCCTGGCCTTTTGTTTCCATTGCGTGCTAGATT
TATGGGCCTCGTCTCTGACGCTAATCATCCCCTTCGGTCCATCTGTCTCT
TCTACCTTTGCGCTTCCCTCCCTTTTCTCCTCGTTCAAGCCTCACCACTG
GTCGCGAGATGATCCCTACGACTCAACACGGCTTTTGCTGGTACTCGCGC
TCGTGGGGAAGGGTTTGGGAGTGGCGGTCTGGTCCATGCGTAAGACCTGC
CTGGTGGGGTTTCTCCAGGGCCAGGTGAAGGCGTCCACCGTCATTCTCTG
GCGGCGAGATCGCTTCTCGGTGGTGTACAACAAGGACCCCGTCACTCAAG
CCTTGGTCCCCGCCGAGATGCGGACCACATTCTTCCAGGAGCAACGCGGG
GACTGGTTGAACCTTGTCCGGCCCCGGGGGTATCTCACTGCCCAGCTCTT
GTTTCACGGGATGCCCTTGTACATCGTGAACACACACCTGAACCTCGGAC
AGCAAGTCTTCCGACGGCGACAGGTGGAAGAGCTGACGCAGCATTGCAAG
AGCCTCTCCCAGGTGGGCTCTGTCGTGCTGTGCGGAGACTTCAACGTGAC
CCCGGAGAGCGAAGAAATCCAGCTCTTGTCCAAACAGGCAGGCGTCAAAG
ATGCGCTGCTGGAGAAGGGATGTTCAGAGCCAACTTGGTCGAGCAGGAAT
CCGCTAACGCACGGTGTACTGCTTGAAGAGGACCATCGTTGCGATTTTAT
TTTTTACAAGGGCTTGGCGCGGCAGCACCGCATGGTGAATCGGCGCTGTC
GACTCGACGTCCCGTTCTGGGGAAATACCTGGCTAAGTGACCATTTTGGG
ATCGTGCTTGATATGATTTTGGAGCCTGTACTGGCTTAACTTTATGTTGG
GTCGCAACGCGTGCATCGGGGACGCGATGAAGGGCTACTCGAGAGATTCA
ACTGTTCTCTGTTCCCCTGCACCTGTCTTTTTTTCTTAATAAATTGTGGA
TCGGAATGGTAGGCAAGCACTAGGCATCGGCCGTGGGAACGTGTCCTTTG
TTGGACTATAGTATCAGAAATAGAAATCACAGAAGAGAATAGCAAAAATG
AGTAAAATGTACGTGTACCCGAATGGGAACATGACTAGTGGTGTGGAAAG
TTTGGGCGCCTTTCGAAACTTAAAAAATAAATCAAATGCAGATGACAATC
T

Coding sequence (CDS) from alignment at CM002458.1:457314..459514-

>rna1914 ID=rna1914|Name=rna1914|organism=Nannochloropsis gaditana|type=CDS|length=3144bp|location=Sequence derived from alignment at CM002458.1:457314..459514- (Nannochloropsis gaditana)
ATACTACCGCGAGGCGTTTGCCGACTTGTACGACAGCTTCTTCGAGGAGC
ACCCCCCCGAAACGCTCGGCAAGCTGACCCTGGGTTTTGTCTACCTGGTG
ATGGCCACGGTCCTGGCCTTTTGTTTCCATTGCGTGCTAGATTTATGGGC
CTCGTCTCTGACGCTAATCATCCCCTTCGGTCCATCTGTCTCTTCTACCT
TTGCGCTTCCCTCCCTTTTCTCCTCGTTCAAGCCTCACCACTGGTCGCGA
GATGATCCCTACGACTCAACACGGCTTTTGCTGGTACTCGCGCTCGTGGG
GAAGGGTTTGGGAGTGGCGGTCTGGTCCATGCGTAAGACCTGCCTGGTGG
GGTTTCTCCAGGGCCAGGTGAAGGCGTCCACCGTCATTCTCTGGCGGCGA
GATCGCTTCTCGGTGGTGTACAACAAGGACCCCGTCACTCAAGCCTTGGT
CCCCGCCGAGATGCGGACCACATTCTTCCAGGAGCAACGCGGGGACTGGT
TGAACCTTGTCCGGCCCCGGGGGTATCTCACTGCCCAGCTCTTGTTTCAC
GGGATGCCCTTGTACATCGTGAACACACACCTGAACCTCGGACAGCAAGT
CTTCCGACGGCGACAGGTGGAAGAGCTGACGCAGCATTGCAAGAGCCTCT
CCCAGGTGGGCTCTGTCGTGCTGTGCGGAGACTTCAACGTGACCCCGGAG
AGCGAAGAAATCCAGCTCTTGTCCAAACAGGCAGGCGTCAAAGATGCGCT
GCTGGAGAAGGGATGTTCAGAGCCAACTTGGTCGAGCAGGAATCCGCTAA
CGCACGGTGTACTGCTTGAAGAGGACCATCGTTGCGATTTTATTTTTTAC
AAGGGCTTGGCGCGGCAGCACCGCATGGTGAATCGGCGCTGTCGACTCGA
CGTCCCGTTCTGGGGAAATACCTGGCTAAGTGACCATTTTGGGATCGTGC
TTGATATGATTTTGGAGCCTGTACTGGCTTAAATGCGCACATCCACATCT
GCCGTGCGAAGCTCCGATGCTTCCGAGGAGACTCGCGTAGCACCGGCTGC
CCTAAGAAGCCTACAAGCGCACGCACCAAATGAAGATTCATTGCCCGTAT
CTCCCTTGGGGAGCAGGGCCGATTCAACAATGCCCTCTTCGGCTGCGAAT
GATCATCATTCGTGCCCCCCCGCCCCGTCCGCCTCGGCACCCCTATCCAC
CGTCAACCACCTGGAAACGTTGCGCGGGCGAGGTAATTGCAGTACATGTA
CGACTTGTAGCGTCATGAGCAGCGATCTGAGCATCAACAGCATGGCGAGT
GATGACGATGGGGCTCAAGACGAGGAGGACGACGAGGAATTGGCAGGCGG
GAATGGTGGTACAGAGGAAGATGCCAAACATAAGTTCCGTTTGAAGGTCC
TAAATTTCAATGTGTTTGCAGGCAGCCCTATCCCAATGTGTTTCCAAAGC
GTGACTCCCAAGACTGCATCCCTGGAGGGCTCCGAGCGCCTCAAGCTCCA
GGTGGAGCGCATCCGGGCCCTGGGGCCGGACATTATCTGCTTGCAGGAGG
CCTGCTCGGACGGCGTGGAGAGATACTACCGCGAGGCGTTTGCCGACTTG
TACGACAGCTTCTTCGAGGAGCACCCCCCCGAAACGCTCGGCAAGCTGAC
CCTGGGTTTTGTCTACCTGGTGATGGCCACGGTCCTGGCCTTTTGTTTCC
ATTGCGTGCTAGATTTATGGGCCTCGTCTCTGACGCTAATCATCCCCTTC
GGTCCATCTGTCTCTTCTACCTTTGCGCTTCCCTCCCTTTTCTCCTCGTT
CAAGCCTCACCACTGGTCGCGAGATGATCCCTACGACTCAACACGGCTTT
TGCTGGTACTCGCGCTCGTGGGGAAGGGTTTGGGAGTGGCGGTCTGGTCC
ATGCGTAAGACCTGCCTGGTGGGGTTTCTCCAGGGCCAGGTGAAGGCGTC
CACCGTCATTCTCTGGCGGCGAGATCGCTTCTCGGTGGTGTACAACAAGG
ACCCCGTCACTCAAGCCTTGGTCCCCGCCGAGATGCGGACCACATTCTTC
CAGGAGCAACGCGGGGACTGGTTGAACCTTGTCCGGCCCCGGGGGTATCT
CACTGCCCAGCTCTTGTTTCACGGGATGCCCTTGTACATCGTGAACACAC
ACCTGAACCTCGGACAGCAAGTCTTCCGACGGCGACAGGTGGAAGAGCTG
ACGCAGCATTGCAAGAGCCTCTCCCAGGTGGGCTCTGTCGTGCTGTGCGG
AGACTTCAACGTGACCCCGGAGAGCGAAGAAATCCAGCTCTTGTCCAAAC
AGGCAGGCGTCAAAGATGCGCTGCTGGAGAAGGGATGTTCAGAGCCAACT
TGGTCGAGCAGGAATCCGCTAACGCACGGTGTACTGCTTGAAGAGGACCA
TCGTTGCGATTTTATTTTTTACAAGGGCTTGGCGCGGCAGCACCGCATGG
TGAATCGGCGCTGTCGACTCGACGTCCCGTTCTGGGGAAATACCTGGCTA
AGTGACCATTTTGGGATCGTGCTTGATATGATTTTGGAGCCTGTACTGGC
TTAAATGCGCACATCCACATCTGCCGTGCGAAGCTCCGATGCTTCCGAGG
AGACTCGCGTAGCACCGGCTGCCCTAAGAAGCCTACAAGCGCACGCACCA
AATGAAGATTCATTGCCCGTATCTCCCTTGGGGAGCAGGGCCGATTCAAC
AATGCCCTCTTCGGCTGCGAATGATCATCATTCGTGCCCCCCCGCCCCGT
CCGCCTCGGCACCCCTATCCACCGTCAACCACCTGGAAACGTTGCGCGGG
CGAGGTAATTGCAGTACATGTACGACTTGTAGCGTCATGAGCAGCGATCT
GAGCATCAACAGCATGGCGAGTGATGACGATGGGGCTCAAGACGAGGAGG
ACGACGAGGAATTGGCAGGCGGGAATGGTGGTACAGAGGAAGATGCCAAA
CATAAGTTCCGTTTGAAGGTCCTAAATTTCAATGTGTTTGCAGGCAGCCC
TATCCCAATGTGTTTCCAAAGCGTGACTCCCAAGACTGCATCCCTGGAGG
GCTCCGAGCGCCTCAAGCTCCAGGTGGAGCGCATCCGGGCCCTGGGGCCG
GACATTATCTGCTTGCAGGAGGCCTGCTCGGACGGCGTGGAGAG

Synonyms

Publications