EWM28686.1, cds1909 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28686.1 vs. NCBI_GenBank
Match: gi|585111109|gb|EWM28686.1| (Endonuclease/exonuclease/phosphatase [Nannochloropsis gaditana]) HSP 1 Score: 1082.78 bits (2799), Expect = 0.000e+0 Identity = 523/523 (100.00%), Postives = 523/523 (100.00%), Query Frame = 0
Query: 1 MRTSTSAVRSSDASEETRVAPAALRSLQAHAPNEDSLPVSPLGSRADSTMPSSAANDHHSCPPAPSASAPLSTVNHLETLRGRGNCSTCTTCSVMSSDLSINSMASDDDGAQDEEDDEELAGGNGGTEEDAKHKFRLKVLNFNVFAGSPIPMCFQSVTPKTASLEGSERLKLQVERIRALGPDIICLQEACSDGVERYYREAFADLYDSFFEEHPPETLGKLTLGFVYLVMATVLAFCFHCVLDLWASSLTLIIPFGPSVSSTFALPSLFSSFKPHHWSRDDPYDSTRLLLVLALVGKGLGVAVWSMRKTCLVGFLQGQVKASTVILWRRDRFSVVYNKDPVTQALVPAEMRTTFFQEQRGDWLNLVRPRGYLTAQLLFHGMPLYIVNTHLNLGQQVFRRRQVEELTQHCKSLSQVGSVVLCGDFNVTPESEEIQLLSKQAGVKDALLEKGCSEPTWSSRNPLTHGVLLEEDHRCDFIFYKGLARQHRMVNRRCRLDVPFWGNTWLSDHFGIVLDMILEPVLA 523
MRTSTSAVRSSDASEETRVAPAALRSLQAHAPNEDSLPVSPLGSRADSTMPSSAANDHHSCPPAPSASAPLSTVNHLETLRGRGNCSTCTTCSVMSSDLSINSMASDDDGAQDEEDDEELAGGNGGTEEDAKHKFRLKVLNFNVFAGSPIPMCFQSVTPKTASLEGSERLKLQVERIRALGPDIICLQEACSDGVERYYREAFADLYDSFFEEHPPETLGKLTLGFVYLVMATVLAFCFHCVLDLWASSLTLIIPFGPSVSSTFALPSLFSSFKPHHWSRDDPYDSTRLLLVLALVGKGLGVAVWSMRKTCLVGFLQGQVKASTVILWRRDRFSVVYNKDPVTQALVPAEMRTTFFQEQRGDWLNLVRPRGYLTAQLLFHGMPLYIVNTHLNLGQQVFRRRQVEELTQHCKSLSQVGSVVLCGDFNVTPESEEIQLLSKQAGVKDALLEKGCSEPTWSSRNPLTHGVLLEEDHRCDFIFYKGLARQHRMVNRRCRLDVPFWGNTWLSDHFGIVLDMILEPVLA
Sbjct: 1 MRTSTSAVRSSDASEETRVAPAALRSLQAHAPNEDSLPVSPLGSRADSTMPSSAANDHHSCPPAPSASAPLSTVNHLETLRGRGNCSTCTTCSVMSSDLSINSMASDDDGAQDEEDDEELAGGNGGTEEDAKHKFRLKVLNFNVFAGSPIPMCFQSVTPKTASLEGSERLKLQVERIRALGPDIICLQEACSDGVERYYREAFADLYDSFFEEHPPETLGKLTLGFVYLVMATVLAFCFHCVLDLWASSLTLIIPFGPSVSSTFALPSLFSSFKPHHWSRDDPYDSTRLLLVLALVGKGLGVAVWSMRKTCLVGFLQGQVKASTVILWRRDRFSVVYNKDPVTQALVPAEMRTTFFQEQRGDWLNLVRPRGYLTAQLLFHGMPLYIVNTHLNLGQQVFRRRQVEELTQHCKSLSQVGSVVLCGDFNVTPESEEIQLLSKQAGVKDALLEKGCSEPTWSSRNPLTHGVLLEEDHRCDFIFYKGLARQHRMVNRRCRLDVPFWGNTWLSDHFGIVLDMILEPVLA 523
BLAST of EWM28686.1 vs. NCBI_GenBank
Match: gi|922860545|gb|KOO28418.1| (endonuclease exonuclease phosphatase [Chrysochromulina sp. CCMP291]) HSP 1 Score: 80.1073 bits (196), Expect = 2.936e-13 Identity = 41/75 (54.67%), Postives = 48/75 (64.00%), Query Frame = 0
Query: 137 LKVLNFNVFAGSPIPMCFQSVTPKTASLEGSERLKLQVERIRALGPDIICLQEACSDGVERYYREAFADLYDSFF 211
L VL FNVFAG P P TP A L+GS+RL+ QV +IRAL PDIICLQE +DGV YY D Y++ F
Sbjct: 7 LSVLTFNVFAGPPTP------TPFAAQLDGSDRLRHQVAQIRALKPDIICLQEVQTDGVREYYTAKLQDTYEASF 75
BLAST of EWM28686.1 vs. NCBI_GenBank
Match: gi|551609676|ref|XP_005786029.1| (hypothetical protein EMIHUDRAFT_467770 [Emiliania huxleyi CCMP1516] >gi|485639261|gb|EOD33600.1| hypothetical protein EMIHUDRAFT_467770 [Emiliania huxleyi CCMP1516]) HSP 1 Score: 81.2629 bits (199), Expect = 6.440e-13 Identity = 79/260 (30.38%), Postives = 108/260 (41.54%), Query Frame = 0
Query: 309 KTCLVGFLQGQVKASTVILWRRDRFSVVYNKDPVTQALVPAEMRTTFFQEQRGDWLNLVRPRGYLTAQLLFH--GMPLYIVNTHLNL--GQQVF--------------------RRRQVEELTQHCKSLSQV--GSVVLCGDFNVTPESEEIQLLSKQAGVKDALLEKGCSEPTW---------------SSRNPLT-HGVLLEEDH---RCDFIFYKGLARQHRMVNRRCRLDVPFWGNTWLSDHFGIVLDMILEPVLA 523
+T + GFL G V++ VIL +R +D + A F++Q GD LN RPRG L L G L +VNTH N G Q+F R+ Q+++L L++ +LCGD N +PE E L+ + G DA G +W +RNPL G L D R D+IF G A + + R LD P G+ WLSDHFG++ P A
Sbjct: 109 QTTIGGFLLGSVQSGLVILHKR----ATLERDGLATAFP--------FEDQAGDLLNRFRPRGALAVPLRLRGDGSRLLVVNTHANAESGDQLFDLSRLLSGAGISSIPSTSVHRKTQLQQLFLEASRLAEARGARALLCGDLNSSPELGEWAPLASRFGFVDAWRPSGGPGHSWDGARAYCRDAAECGRGTRNPLVREGWLSPGDGAATRLDYIFC-GEASRLTPLESRLALDEPEQGH-WLSDHFGVMTTFEAAPFAA 354 HSP 2 Score: 78.1814 bits (191), Expect = 7.229e-12 Identity = 37/76 (48.68%), Postives = 47/76 (61.84%), Query Frame = 0
Query: 136 RLKVLNFNVFAGSPIPMCFQSVTPKTASLEGSERLKLQVERIRALGPDIICLQEACSDGVERYYREAFADLYDSFF 211
RL VL +NVF G P P TP +L+GS RL Q+ ++R L PD+ICLQE SDGV Y A +D+YD+ F
Sbjct: 15 RLSVLTYNVFCGPPTP------TPLAGTLDGSARLAGQISKLRELAPDVICLQEVVSDGVRERYAHALSDMYDASF 84
BLAST of EWM28686.1 vs. NCBI_GenBank
Match: gi|551609672|ref|XP_005786027.1| (hypothetical protein EMIHUDRAFT_111736 [Emiliania huxleyi CCMP1516] >gi|485639259|gb|EOD33598.1| hypothetical protein EMIHUDRAFT_111736 [Emiliania huxleyi CCMP1516]) HSP 1 Score: 78.1814 bits (191), Expect = 3.484e-12 Identity = 37/76 (48.68%), Postives = 47/76 (61.84%), Query Frame = 0
Query: 136 RLKVLNFNVFAGSPIPMCFQSVTPKTASLEGSERLKLQVERIRALGPDIICLQEACSDGVERYYREAFADLYDSFF 211
RL VL +NVF G P P TP +L+GS RL Q+ ++R L PD+ICLQE SDGV Y A +D+YD+ F
Sbjct: 15 RLSVLTYNVFCGPPTP------TPLAGTLDGSARLAGQISKLRELAPDVICLQEVVSDGVRERYAHALSDMYDASF 84
BLAST of EWM28686.1 vs. NCBI_GenBank
Match: gi|922852721|gb|KOO21389.1| (endonuclease exonuclease phosphatase [Chrysochromulina sp. CCMP291]) HSP 1 Score: 72.0182 bits (175), Expect = 1.072e-9 Identity = 79/251 (31.47%), Postives = 102/251 (40.64%), Query Frame = 0
Query: 309 KTCLVGFLQGQVKASTVILWRRDRFSVVYNKDPVTQALVPAEMRTTFFQEQRGDWLNLVRPRGYLTAQLLFHGMPLYIV--NTHLN------LGQQVF---------------RRRQVEELTQHCKSLSQVGSVVLCGDFNVTPESEEI-----QLLSKQAGVKDALLEKGCSEP---TW-SSRNPLTHGVLLEEDH----RCDFIFYKGLARQHRMVNRRCRLDVPFWGNTWLSDHFGIVLDMILEPVLA 523
+T + GFL G V+A +IL RRD A PA T F +Q GD LN RPRG L A L IV NTH N LG +F RR Q+ +L H LS VV+CGD N PE EI + + A + P +W +RNPL L E H + D+IF A+ + L + G LSDHFG++ + +LA
Sbjct: 109 QTTISGFLLGPVQAGLMILHRRDTLV----------ADGPASAIT--FDDQSGDLLNAFRPRGVLCAHLRLRADNSRIVVANTHANSESASQLGGMIFGAYSTLPSVPLSSTPRRNQLNQLFVHASRLSLHSRVVVCGDLNSAPELGEIPANEHRFIDATAATAANRQRQHGGTPWLHSWDGTRNPLVAAGWLSEGHDARTQLDYIF---AAQDSGLEPEEVSLALDD-GPIPLSDHFGVLARFGVHQILA 343 HSP 2 Score: 69.707 bits (169), Expect = 5.604e-9 Identity = 33/63 (52.38%), Postives = 42/63 (66.67%), Query Frame = 0
Query: 137 LKVLNFNVFAGSPIPMCFQSVTPKTASLEGSERLKLQVERIRALGPDIICLQEACSDGVERYY 199
L+VL FN FAG P P T LEGS+RL LQV++IR L PD++CLQE SDGV +++
Sbjct: 16 LRVLTFNAFAGPPTP------TKVDRGLEGSKRLSLQVDKIRELAPDVVCLQEVQSDGVRKHF 72
BLAST of EWM28686.1 vs. NCBI_GenBank
Match: gi|746392059|ref|WP_039434780.1| (endonuclease [Xanthomonas vasicola] >gi|704107866|gb|KGR42988.1| endonuclease [Xanthomonas vasicola] >gi|704108075|gb|KGR43185.1| endonuclease [Xanthomonas vasicola] >gi|704110459|gb|KGR45382.1| endonuclease [Xanthomonas vasicola] >gi|704126578|gb|KGR59950.1| endonuclease [Xanthomonas vasicola]) HSP 1 Score: 62.7734 bits (151), Expect = 3.195e-7 Identity = 47/153 (30.72%), Postives = 76/153 (49.67%), Query Frame = 0
Query: 376 QLLFHGMPLYIVNTHLNLGQQV----FRRRQVEELTQHCKSLSQVGSVVLCGDFNVTPESEEIQLLSKQAGVKDALLEKGCSEPTWSSRNPLTHGVLLEEDHRCDFIFYKGLARQHRMVNRRCRL--DVPFWGNTWLSDHFG--IVLDMILEP 520
Q+ G P+ + THLN R+RQV +L S S+ VV+ GDFN ++ +++ L K G + + SE T S+ N H + ++ R D +F++ Q+R++ R R+ D P+ W SDH+G + L + LEP
Sbjct: 153 QVDVDGQPVNVYVTHLNERTDARGTATRKRQVTDLLDFIASNSEQAPVVIAGDFNTAADTLDLEALRKGYGDSYGSVHRN-SEDTVSTLN--MH--VFDKPARIDHVFFQ----QNRLLAREARILFDTPYAEGRWASDHYGVWVRLQLALEP 296
BLAST of EWM28686.1 vs. NCBI_GenBank
Match: gi|1011185435|ref|WP_062105958.1| (hypothetical protein [Bacillus niameyensis]) HSP 1 Score: 62.003 bits (149), Expect = 3.469e-7 Identity = 49/148 (33.11%), Postives = 74/148 (50.00%), Query Frame = 0
Query: 369 PRGYLTAQLLFHGMPLYIVNTHLNLGQQVFRRRQVEELTQHCKSLSQVGSVVLCGDFNVTPESEEIQLLSKQAGVKDALLEKGCSEPTWSSRNPLTHGVLLEEDHRCDFIFYKGLARQHRMVNRRCRLDVPFWGNTWLSDHFGIVLDM 516
PRG L A + G L++ NTHL+L + +R QV+E+ + K+ GS VL GDFN P+SEEIQ L ++ + D E ++ S NP + R D+IF +RQ ++N+ + SDH I+ +M
Sbjct: 110 PRGLLRALIDVCGTQLHVFNTHLSLESRS-KREQVKEIVEWTKNFE--GSKVLIGDFNSEPDSEEIQALLGKSDLIDC-FEDIADNASYPSDNP---------EIRIDYIF---ASRQLEILNQSALM-------REGSDHLPIIAEM 234 The following BLAST results are available for this feature:
BLAST of EWM28686.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 7
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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