EWM28686.1, cds1909 (CDS) Nannochloropsis gaditana

Overview
NameEWM28686.1
Unique Namecds1909
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:458730..459319 -
Alignment locationCM002458.1:457626..458607 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28686.1
ProductEndonuclease/exonuclease/phosphatase
Orig transcript idgnl|cribi|Naga_100002g106.4805.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:458730..459319 -
CM002458.1supercontigCM002458.1:457626..458607 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0004518nuclease activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR005135Endo/exonuclease/phosphatase
Homology
BLAST of EWM28686.1 vs. NCBI_GenBank
Match: gi|585111109|gb|EWM28686.1| (Endonuclease/exonuclease/phosphatase [Nannochloropsis gaditana])

HSP 1 Score: 1082.78 bits (2799), Expect = 0.000e+0
Identity = 523/523 (100.00%), Postives = 523/523 (100.00%), Query Frame = 0
Query:    1 MRTSTSAVRSSDASEETRVAPAALRSLQAHAPNEDSLPVSPLGSRADSTMPSSAANDHHSCPPAPSASAPLSTVNHLETLRGRGNCSTCTTCSVMSSDLSINSMASDDDGAQDEEDDEELAGGNGGTEEDAKHKFRLKVLNFNVFAGSPIPMCFQSVTPKTASLEGSERLKLQVERIRALGPDIICLQEACSDGVERYYREAFADLYDSFFEEHPPETLGKLTLGFVYLVMATVLAFCFHCVLDLWASSLTLIIPFGPSVSSTFALPSLFSSFKPHHWSRDDPYDSTRLLLVLALVGKGLGVAVWSMRKTCLVGFLQGQVKASTVILWRRDRFSVVYNKDPVTQALVPAEMRTTFFQEQRGDWLNLVRPRGYLTAQLLFHGMPLYIVNTHLNLGQQVFRRRQVEELTQHCKSLSQVGSVVLCGDFNVTPESEEIQLLSKQAGVKDALLEKGCSEPTWSSRNPLTHGVLLEEDHRCDFIFYKGLARQHRMVNRRCRLDVPFWGNTWLSDHFGIVLDMILEPVLA 523
            MRTSTSAVRSSDASEETRVAPAALRSLQAHAPNEDSLPVSPLGSRADSTMPSSAANDHHSCPPAPSASAPLSTVNHLETLRGRGNCSTCTTCSVMSSDLSINSMASDDDGAQDEEDDEELAGGNGGTEEDAKHKFRLKVLNFNVFAGSPIPMCFQSVTPKTASLEGSERLKLQVERIRALGPDIICLQEACSDGVERYYREAFADLYDSFFEEHPPETLGKLTLGFVYLVMATVLAFCFHCVLDLWASSLTLIIPFGPSVSSTFALPSLFSSFKPHHWSRDDPYDSTRLLLVLALVGKGLGVAVWSMRKTCLVGFLQGQVKASTVILWRRDRFSVVYNKDPVTQALVPAEMRTTFFQEQRGDWLNLVRPRGYLTAQLLFHGMPLYIVNTHLNLGQQVFRRRQVEELTQHCKSLSQVGSVVLCGDFNVTPESEEIQLLSKQAGVKDALLEKGCSEPTWSSRNPLTHGVLLEEDHRCDFIFYKGLARQHRMVNRRCRLDVPFWGNTWLSDHFGIVLDMILEPVLA
Sbjct:    1 MRTSTSAVRSSDASEETRVAPAALRSLQAHAPNEDSLPVSPLGSRADSTMPSSAANDHHSCPPAPSASAPLSTVNHLETLRGRGNCSTCTTCSVMSSDLSINSMASDDDGAQDEEDDEELAGGNGGTEEDAKHKFRLKVLNFNVFAGSPIPMCFQSVTPKTASLEGSERLKLQVERIRALGPDIICLQEACSDGVERYYREAFADLYDSFFEEHPPETLGKLTLGFVYLVMATVLAFCFHCVLDLWASSLTLIIPFGPSVSSTFALPSLFSSFKPHHWSRDDPYDSTRLLLVLALVGKGLGVAVWSMRKTCLVGFLQGQVKASTVILWRRDRFSVVYNKDPVTQALVPAEMRTTFFQEQRGDWLNLVRPRGYLTAQLLFHGMPLYIVNTHLNLGQQVFRRRQVEELTQHCKSLSQVGSVVLCGDFNVTPESEEIQLLSKQAGVKDALLEKGCSEPTWSSRNPLTHGVLLEEDHRCDFIFYKGLARQHRMVNRRCRLDVPFWGNTWLSDHFGIVLDMILEPVLA 523          
BLAST of EWM28686.1 vs. NCBI_GenBank
Match: gi|922860545|gb|KOO28418.1| (endonuclease exonuclease phosphatase [Chrysochromulina sp. CCMP291])

HSP 1 Score: 80.1073 bits (196), Expect = 2.936e-13
Identity = 41/75 (54.67%), Postives = 48/75 (64.00%), Query Frame = 0
Query:  137 LKVLNFNVFAGSPIPMCFQSVTPKTASLEGSERLKLQVERIRALGPDIICLQEACSDGVERYYREAFADLYDSFF 211
            L VL FNVFAG P P      TP  A L+GS+RL+ QV +IRAL PDIICLQE  +DGV  YY     D Y++ F
Sbjct:    7 LSVLTFNVFAGPPTP------TPFAAQLDGSDRLRHQVAQIRALKPDIICLQEVQTDGVREYYTAKLQDTYEASF 75          
BLAST of EWM28686.1 vs. NCBI_GenBank
Match: gi|551609676|ref|XP_005786029.1| (hypothetical protein EMIHUDRAFT_467770 [Emiliania huxleyi CCMP1516] >gi|485639261|gb|EOD33600.1| hypothetical protein EMIHUDRAFT_467770 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 81.2629 bits (199), Expect = 6.440e-13
Identity = 79/260 (30.38%), Postives = 108/260 (41.54%), Query Frame = 0
Query:  309 KTCLVGFLQGQVKASTVILWRRDRFSVVYNKDPVTQALVPAEMRTTFFQEQRGDWLNLVRPRGYLTAQLLFH--GMPLYIVNTHLNL--GQQVF--------------------RRRQVEELTQHCKSLSQV--GSVVLCGDFNVTPESEEIQLLSKQAGVKDALLEKGCSEPTW---------------SSRNPLT-HGVLLEEDH---RCDFIFYKGLARQHRMVNRRCRLDVPFWGNTWLSDHFGIVLDMILEPVLA 523
            +T + GFL G V++  VIL +R        +D +  A          F++Q GD LN  RPRG L   L     G  L +VNTH N   G Q+F                    R+ Q+++L      L++      +LCGD N +PE  E   L+ + G  DA    G    +W                +RNPL   G L   D    R D+IF  G A +   +  R  LD P  G+ WLSDHFG++      P  A
Sbjct:  109 QTTIGGFLLGSVQSGLVILHKR----ATLERDGLATAFP--------FEDQAGDLLNRFRPRGALAVPLRLRGDGSRLLVVNTHANAESGDQLFDLSRLLSGAGISSIPSTSVHRKTQLQQLFLEASRLAEARGARALLCGDLNSSPELGEWAPLASRFGFVDAWRPSGGPGHSWDGARAYCRDAAECGRGTRNPLVREGWLSPGDGAATRLDYIFC-GEASRLTPLESRLALDEPEQGH-WLSDHFGVMTTFEAAPFAA 354          

HSP 2 Score: 78.1814 bits (191), Expect = 7.229e-12
Identity = 37/76 (48.68%), Postives = 47/76 (61.84%), Query Frame = 0
Query:  136 RLKVLNFNVFAGSPIPMCFQSVTPKTASLEGSERLKLQVERIRALGPDIICLQEACSDGVERYYREAFADLYDSFF 211
            RL VL +NVF G P P      TP   +L+GS RL  Q+ ++R L PD+ICLQE  SDGV   Y  A +D+YD+ F
Sbjct:   15 RLSVLTYNVFCGPPTP------TPLAGTLDGSARLAGQISKLRELAPDVICLQEVVSDGVRERYAHALSDMYDASF 84          
BLAST of EWM28686.1 vs. NCBI_GenBank
Match: gi|551609672|ref|XP_005786027.1| (hypothetical protein EMIHUDRAFT_111736 [Emiliania huxleyi CCMP1516] >gi|485639259|gb|EOD33598.1| hypothetical protein EMIHUDRAFT_111736 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 78.1814 bits (191), Expect = 3.484e-12
Identity = 37/76 (48.68%), Postives = 47/76 (61.84%), Query Frame = 0
Query:  136 RLKVLNFNVFAGSPIPMCFQSVTPKTASLEGSERLKLQVERIRALGPDIICLQEACSDGVERYYREAFADLYDSFF 211
            RL VL +NVF G P P      TP   +L+GS RL  Q+ ++R L PD+ICLQE  SDGV   Y  A +D+YD+ F
Sbjct:   15 RLSVLTYNVFCGPPTP------TPLAGTLDGSARLAGQISKLRELAPDVICLQEVVSDGVRERYAHALSDMYDASF 84          
BLAST of EWM28686.1 vs. NCBI_GenBank
Match: gi|922852721|gb|KOO21389.1| (endonuclease exonuclease phosphatase [Chrysochromulina sp. CCMP291])

HSP 1 Score: 72.0182 bits (175), Expect = 1.072e-9
Identity = 79/251 (31.47%), Postives = 102/251 (40.64%), Query Frame = 0
Query:  309 KTCLVGFLQGQVKASTVILWRRDRFSVVYNKDPVTQALVPAEMRTTFFQEQRGDWLNLVRPRGYLTAQLLFHGMPLYIV--NTHLN------LGQQVF---------------RRRQVEELTQHCKSLSQVGSVVLCGDFNVTPESEEI-----QLLSKQAGVKDALLEKGCSEP---TW-SSRNPLTHGVLLEEDH----RCDFIFYKGLARQHRMVNRRCRLDVPFWGNTWLSDHFGIVLDMILEPVLA 523
            +T + GFL G V+A  +IL RRD             A  PA   T  F +Q GD LN  RPRG L A L        IV  NTH N      LG  +F               RR Q+ +L  H   LS    VV+CGD N  PE  EI     + +   A        +    P   +W  +RNPL     L E H    + D+IF    A+   +      L +   G   LSDHFG++    +  +LA
Sbjct:  109 QTTISGFLLGPVQAGLMILHRRDTLV----------ADGPASAIT--FDDQSGDLLNAFRPRGVLCAHLRLRADNSRIVVANTHANSESASQLGGMIFGAYSTLPSVPLSSTPRRNQLNQLFVHASRLSLHSRVVVCGDLNSAPELGEIPANEHRFIDATAATAANRQRQHGGTPWLHSWDGTRNPLVAAGWLSEGHDARTQLDYIF---AAQDSGLEPEEVSLALDD-GPIPLSDHFGVLARFGVHQILA 343          

HSP 2 Score: 69.707 bits (169), Expect = 5.604e-9
Identity = 33/63 (52.38%), Postives = 42/63 (66.67%), Query Frame = 0
Query:  137 LKVLNFNVFAGSPIPMCFQSVTPKTASLEGSERLKLQVERIRALGPDIICLQEACSDGVERYY 199
            L+VL FN FAG P P      T     LEGS+RL LQV++IR L PD++CLQE  SDGV +++
Sbjct:   16 LRVLTFNAFAGPPTP------TKVDRGLEGSKRLSLQVDKIRELAPDVVCLQEVQSDGVRKHF 72          
BLAST of EWM28686.1 vs. NCBI_GenBank
Match: gi|746392059|ref|WP_039434780.1| (endonuclease [Xanthomonas vasicola] >gi|704107866|gb|KGR42988.1| endonuclease [Xanthomonas vasicola] >gi|704108075|gb|KGR43185.1| endonuclease [Xanthomonas vasicola] >gi|704110459|gb|KGR45382.1| endonuclease [Xanthomonas vasicola] >gi|704126578|gb|KGR59950.1| endonuclease [Xanthomonas vasicola])

HSP 1 Score: 62.7734 bits (151), Expect = 3.195e-7
Identity = 47/153 (30.72%), Postives = 76/153 (49.67%), Query Frame = 0
Query:  376 QLLFHGMPLYIVNTHLNLGQQV----FRRRQVEELTQHCKSLSQVGSVVLCGDFNVTPESEEIQLLSKQAGVKDALLEKGCSEPTWSSRNPLTHGVLLEEDHRCDFIFYKGLARQHRMVNRRCRL--DVPFWGNTWLSDHFG--IVLDMILEP 520
            Q+   G P+ +  THLN          R+RQV +L     S S+   VV+ GDFN   ++ +++ L K  G     + +  SE T S+ N   H  + ++  R D +F++    Q+R++ R  R+  D P+    W SDH+G  + L + LEP
Sbjct:  153 QVDVDGQPVNVYVTHLNERTDARGTATRKRQVTDLLDFIASNSEQAPVVIAGDFNTAADTLDLEALRKGYGDSYGSVHRN-SEDTVSTLN--MH--VFDKPARIDHVFFQ----QNRLLAREARILFDTPYAEGRWASDHYGVWVRLQLALEP 296          
BLAST of EWM28686.1 vs. NCBI_GenBank
Match: gi|1011185435|ref|WP_062105958.1| (hypothetical protein [Bacillus niameyensis])

HSP 1 Score: 62.003 bits (149), Expect = 3.469e-7
Identity = 49/148 (33.11%), Postives = 74/148 (50.00%), Query Frame = 0
Query:  369 PRGYLTAQLLFHGMPLYIVNTHLNLGQQVFRRRQVEELTQHCKSLSQVGSVVLCGDFNVTPESEEIQLLSKQAGVKDALLEKGCSEPTWSSRNPLTHGVLLEEDHRCDFIFYKGLARQHRMVNRRCRLDVPFWGNTWLSDHFGIVLDM 516
            PRG L A +   G  L++ NTHL+L  +  +R QV+E+ +  K+    GS VL GDFN  P+SEEIQ L  ++ + D   E      ++ S NP         + R D+IF    +RQ  ++N+   +          SDH  I+ +M
Sbjct:  110 PRGLLRALIDVCGTQLHVFNTHLSLESRS-KREQVKEIVEWTKNFE--GSKVLIGDFNSEPDSEEIQALLGKSDLIDC-FEDIADNASYPSDNP---------EIRIDYIF---ASRQLEILNQSALM-------REGSDHLPIIAEM 234          
The following BLAST results are available for this feature:
BLAST of EWM28686.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 7
Match NameE-valueIdentityDescription
gi|585111109|gb|EWM28686.1|0.000e+0100.00Endonuclease/exonuclease/phosphatase [Nannochlorop... [more]
gi|922860545|gb|KOO28418.1|2.936e-1354.67endonuclease exonuclease phosphatase [Chrysochromu... [more]
gi|551609676|ref|XP_005786029.1|6.440e-1330.38hypothetical protein EMIHUDRAFT_467770 [Emiliania ... [more]
gi|551609672|ref|XP_005786027.1|3.484e-1248.68hypothetical protein EMIHUDRAFT_111736 [Emiliania ... [more]
gi|922852721|gb|KOO21389.1|1.072e-931.47endonuclease exonuclease phosphatase [Chrysochromu... [more]
gi|746392059|ref|WP_039434780.1|3.195e-730.72endonuclease [Xanthomonas vasicola] >gi|704107866|... [more]
gi|1011185435|ref|WP_062105958.1|3.469e-733.11hypothetical protein [Bacillus niameyensis][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1914rna1914Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications