rna1912, rna1912 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1912
Unique Name	rna1912
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1948
Alignment location	CM002458.1:454418..456258 +

Link to JBrowse

Properties


Property Name	Value
Product	ring finger domain protein
Orig transcript id	gnl\|cribi\|Naga_100002g109.4782.mrna
Orig protein id	gnl\|cribi\|Naga_100002g109.4782
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:454418..456258 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100002g109	gene1825	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1912	rna1912-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28663.1	cds1907	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:454418..456258+
coding sequence from alignment at CM002458.1:454418..456258+

mRNA sequence

>rna1912 ID=rna1912|Name=rna1912|organism=Nannochloropsis gaditana|type=mRNA|length=1948bp
ATGGGATTGAACGGGCGGCCGGCGTCGTTTTGGAGACACATACATGACCG
TGCACTTCATTTGAAAAGTGAGGCAGGAGCGGATCCTGACACCGAGGGGG
ACGATGGCCATGTCCATTTTCAGCATCTGAAGCGGCAGCTGGGCTTCTGG
CAACTGACCATGTTGGGCGTAGGCGGGAGTATTGGAGCGGGCGTCTTCTC
TCTAACCGGAGTAGCTGCTGCAGGTGCTGGTCCTGCTGTCGTATTTAGTT
ACATATTCAGTGGTATTATCGCGGCAATAGACGCTTTGTGTTATTCGGAA
ATGGCGTCGCGGTACCCCCAGGCGGGCACCGTCTTCCTCTATACCCACGT
CACCTTCGGGGAGCTGCCTGCGCTGCTTGTCAGCATCAACCTGCTCGTCG
ACTATACTGTAGCTGCTGCTTTGATATCGCGCTCCTTCGCCCTGTACCTG
GTGGACTTCCTGAAGCACGCCGGGCTCGGTCCCGTCCCCGCCTGGCTCGC
CCCAGTGCCTGTCACTGAGCTCTTCAGTCTCAGCCTGGTCGCACCCCTCC
TCCTCCTCCTCCACACCCTCGTGCTCTGCAGGGGGACAGAGACGGGTGCC
GTCCTGAACGCGATTCTTACCAGCGCCAAGGTGGCAGTGATCCTGCTCGT
CTGCGCCCTCGGCCTCTTCCATGTCCAGCCCCGGCACTGGCTCCCCTTCT
TCCCCCGGGGCCTTGAGGCCGTCTTCCGCACGTCCTCCACCGTCTTCTTC
TCCTACGTGGGCTTTGACACGATCGCCTCCTCCTCGGAGGAATGTCAGGA
CCCCCTGCGTGACATGCCTCGAGCCATCCTGGTCTCCCTAGCCACCTGCG
TCGGCATCTACTGCGCCGTCTGTCTGGTCCTCACGGGCATGGTGCCCTTC
GACGCCATCGACCTGGCCGCCCCCCTGTCCTCGGCCTTCGCGGGTCTGGG
CCTCGCGTGGGTGCAGGCCGTCATCTCCCTCGGGGGGGTGGTGGGGCTCG
CCACCACCCTCCTCATAGGCCTCTTTGCCCAGGCCCGCATCTGGCTAGGC
ATCGCCCGAGACGGTCTTCTCCCCGCGGCGCTCGCTCGCATCCACCCACG
CTTTAAGACGCCGGTGAACGCACAGGCGTTGTGCGGGTTCCTACCCATGG
CCCTGGCCGCGTTTTTCAACGTCAGGCTTCTCTCGGAGCTCCTGGACATC
GGTGTGATTCTGGCATACGGAACCGTCTGCGCCGCCCTGCTCCTGCAGCG
GTCCACAAGACGCGTTTACACCACCCGCTGTCTCGTCGCCCTGCTTCCGG
CCTGTGCTCTGCCTCTTTCCCTGCACAAATACAAGGCCAGCACTGGAATC
CTTGCTTTAGACACGGCAATCTGGCTCTCGCCCCTCTTCGTGCTTGTGCC
CCTGCTCCGGCCTGGGGACTACCTAGCCCCACCGCCGGGGGTCTGTTTCG
CCTGCCCCGCGGTACCCTACGTGCCTGTGGCGGGTGTTGTCTTGAATGTG
TACTTAGCGGTTAACCTTCCAGCTGTCGCTTGGGCCCGCCTCTTCATACT
CTGGACTGGCATCCTTCTTTACTACGTATGGACAGAGTATGGGTATTTCC
TGAGGGGCGACGACAGAAGGGATGTGGGAGCAAGACGCACACGAAAGGAG
CGCCCAAAAGATGTCACCGAAAATGGCAAGGGGCCGCTCTCACCGACAGA
CTCCCTTCGCCGTCGCCACGGTGGAGTGGGGGAATTCGGAAAGGGACAGC
AATTGGGCAGGTGGGGGGAAGGATTGGATGGGAAAAAAGGAGAAAATTTG
TTGCGGAAGCCATTGCTGGATGGCGAAGACATTGTATGATTGTACATGAA
AAAATCTGTGCATAAAAATACGAGCAAGCATCTGATCCGCCAAGCCACAT
AAAGAAAGAAGTGGCTAAAAAAATACAGACGATTGCGTAAATAAACGT

protein sequence of rna1912

>rna1912-protein ID=rna1912-protein|Name=rna1912|organism=Nannochloropsis gaditana|type=polypeptide|length=436bp
MIHEKNSGFSNVRVRLLSVNITRGCGQGPSLMIEPPPSPGHTSFGIMNSF
QKPKARSHSEVKPPHHTTSHEPDINGSGGGKNGAAGPATRGRHASSAKGG
AQSGGCKRGHSDSFSSNKAGTIKRQGFEGVTCNDKKPSAKSQKNETTAEI
ERRPFPFRRGAGTFRDRLFRATNQRMYLIHNENLSTEGNLHRRFHVSGTT
GNVYHVDICRIPTCDCPDFVRHTIPGQAGVVCKHILLVYLKVLRLALNDT
LLPQKRLLQDELTRMFARLPGKGGEEDEKSWGDVLVDAKARAAYTALVDE
AAAGDAGAKKDKGQQTGNLCLDLAREDECPVCLEQFDTQKPEEVVICYAC
HKPTHALCFRTWNGVKISEGLPRSCVWCRARWLDPVLAGASDGAKARAES
QAGYVNVGKLTGQGGREEYQSMYSRGRNRWWREHDF

mRNA from alignment at CM002458.1:454418..456258+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1912 ID=rna1912|Name=rna1912|organism=Nannochloropsis gaditana|type=mRNA|length=1841bp|location=Sequence derived from alignment at CM002458.1:454418..456258+ (Nannochloropsis gaditana)
CCTGGGAGCGACGCCGTGGTCTCTGTCCATGCTAGTCGTGGCTTGCAGCG
GTGTACAGTGGTTTACATGATACACGAGAAGAATTCAGGCTTTTCCAACG
TCAGGGTGCGACTGTTGAGTGTAAATATAACGCGTGGATGTGGCCAGGGG
CCAAGTCTCATGATtgaacctcctccatccccaggGCATACCAGTTTCGG
AATTATGAACTCTTTCCAGAAACCAAAGGCAAGGTCACATTCTGAAGTGA
AACCTCCCCATCACACCACTAGTCATGAGCCTGATATAAATGGTAGCGGT
GGCGGTAAAAACGGCGCAGCTGGACCCGCTACCCGCGGGCGCCATGCATC
ATCAGCCAAAGGAGGCGCTCAAAGTGGCGGATGCAAACGCGGGCACAGCG
ACTCTTTTAGCTCTAACAAGGCGGGTACAATCAAGCGCCAGGGATTTGAA
GGGGTTACATGCAATGACAAGAAGCCGTCAGCGAAATCACAGAAAAATGA
AACGACAGCCGAAATCGAAAGacgccctttccctttccgaAGGGGAGCTG
GTACATTCCGCGATCGCTTGTTCCGTGCAACCAATCAGCGCATGTATTTG
ATTCACAACGAAAATTTGAGTACAGAGGGGAACCTACACCGTCGGTTTCA
TGTGTCAGGGACTACAGGTGAGATCTTGAAAGTTGAGAATACGAGCATAT
GCAGGAGCGAGGGTGAATTTTATTCAGCTAGTTGTGACCAAAATAAGTCA
TTCACAATACAGGTAACGTCTATCATGTAGATATTTGTCGCATCCCTACA
TGCGATTGCCCCGATTTTGTGCGCCACACCATCCCCGGTCAAGCCGGGGT
CGTTTGCAAgcacatcctcctcgtctatCTTAAGGTCCTCCGGCTCGCCT
TAAACGACACGCTGCTCCCGCAAAAACGCCTGCTGCAAGACGAGCTGACT
CGCATGTTTGCTCGCTTACCCGGCaaaggaggcgaggaggatgagaagtc
GTGGGGCGATGTCTTGGTCGACGCGAAAGCTCGCGCGGCTTACACGGCCT
TGGTGGATGAGGCTGCGGCCGGAGACGcgggggcgaagaaggacaaAGGA
CAGCAAACGGGGAATCTATGTCTGGATTTGGCCCGGGAAGACGAATGTCC
CGTCTGTTTAGAACAGTTCGACACACAGaagccggaggaggtggtgatcT
GCTATGCCTGCCACAAGCCCACACACGCGCTCTGCTTCCGGACCTGGAAT
GGAGTGAAGATCTCCGAGGGGCTGCCACGCTCCTGCGTCTGGTGCCGGGC
AAGATGGCTAGACCCTGTCCTAGCGGGAGCGAGTGATGGTGCGAAAGCGA
GGGCCGAGAGCCAGGCGGGCTACGTGAATGTGGGGAAGCTCACAGGCcag
ggtgggcgggaggagtaTCAATCCATGTACAGTCGAGGGAGAAATAGATG
GTGGCGAGAGCATGATTTCTGATGTCGCCGGAATGTTTAGTAAGGCCGCT
TTCGAGGCATGTGCGCACGCTGTTTCATAGTGGGTAACGGGAAAGGCGTC
ATATCAGACGGGGATGCCGACAACGTTGTCTAAAATGCTCGCGAAACGCT
CTTTCGTTGGAAATGGTGTACGGACGCGACTGCAATGAAGCTCTGGGTCA
GATTTATTTACGTTCGCACCTCAGCGGAGGTGCTGCGGCGAGCATGTTGT
GagctgagaaggaggggcgaggactGGATAGGCGGCTGGCCTTCGGAAGA
CTCGTGTTTGAGGATCAGAGTAACTTGCTGTTGTATGGCATTGAAGAATA
CGCCTTAAAATAAAAAGAAATCCAATGATAAGCTGTAAAAG

Coding sequence (CDS) from alignment at CM002458.1:454418..456258+

>rna1912 ID=rna1912|Name=rna1912|organism=Nannochloropsis gaditana|type=CDS|length=2622bp|location=Sequence derived from alignment at CM002458.1:454418..456258+ (Nannochloropsis gaditana)
ATGATACACGAGAAGAATTCAGGCTTTTCCAACGTCAGGGTGCGACTGTT
GAGTGTAAATATAACGCGTGGATGTGGCCAGGGGCCAAGTCTCATGATtg
aacctcctccatccccaggGCATACCAGTTTCGGAATTATGAACTCTTTC
CAGAAACCAAAGGCAAGGTCACATTCTGAAGTGAAACCTCCCCATCACAC
CACTAGTCATGAGCCTGATATAAATGGTAGCGGTGGCGGTAAAAACGGCG
CAGCTGGACCCGCTACCCGCGGGCGCCATGCATCATCAGCCAAAGGAGGC
GCTCAAAGTGGCGGATGCAAACGCGGGCACAGCGACTCTTTTAGCTCTAA
CAAGGCGGGTACAATCAAGCGCCAGGGATTTGAAGGGGTTACATGCAATG
ACAAGAAGCCGTCAGCGAAATCACAGAAAAATGAAACGACAGCCGAAATC
GAAAGacgccctttccctttccgaAGGGGAGCTGGTACATTCCGCGATCG
CTTGTTCCGTGCAACCAATCAGCGCATGTATTTGATTCACAACGAAAATT
TGAGTACAGAGGGGAACCTACACCGTCGGTTTCATGTGTCAGGGACTACA
GGTAACGTCTATCATGTAGATATTTGTCGCATCCCTACATGCGATTGCCC
CGATTTTGTGCGCCACACCATCCCCGGTCAAGCCGGGGTCGTTTGCAAgc
acatcctcctcgtctatCTTAAGGTCCTCCGGCTCGCCTTAAACGACACG
CTGCTCCCGCAAAAACGCCTGCTGCAAGACGAGCTGACTCGCATGTTTGC
TCGCTTACCCGGCaaaggaggcgaggaggatgagaagtcGTGGGGCGATG
TCTTGGTCGACGCGAAAGCTCGCGCGGCTTACACGGCCTTGGTGGATGAG
GCTGCGGCCGGAGACGcgggggcgaagaaggacaaAGGACAGCAAACGGG
GAATCTATGTCTGGATTTGGCCCGGGAAGACGAATGTCCCGTCTGTTTAG
AACAGTTCGACACACAGaagccggaggaggtggtgatcTGCTATGCCTGC
CACAAGCCCACACACGCGCTCTGCTTCCGGACCTGGAATGGAGTGAAGAT
CTCCGAGGGGCTGCCACGCTCCTGCGTCTGGTGCCGGGCAAGATGGCTAG
ACCCTGTCCTAGCGGGAGCGAGTGATGGTGCGAAAGCGAGGGCCGAGAGC
CAGGCGGGCTACGTGAATGTGGGGAAGCTCACAGGCcagggtgggcggga
ggagtaTCAATCCATGTACAGTCGAGGGAGAAATAGATGGTGGCGAGAGC
ATGATTTCTGAATGATACACGAGAAGAATTCAGGCTTTTCCAACGTCAGG
GTGCGACTGTTGAGTGTAAATATAACGCGTGGATGTGGCCAGGGGCCAAG
TCTCATGATtgaacctcctccatccccaggGCATACCAGTTTCGGAATTA
TGAACTCTTTCCAGAAACCAAAGGCAAGGTCACATTCTGAAGTGAAACCT
CCCCATCACACCACTAGTCATGAGCCTGATATAAATGGTAGCGGTGGCGG
TAAAAACGGCGCAGCTGGACCCGCTACCCGCGGGCGCCATGCATCATCAG
CCAAAGGAGGCGCTCAAAGTGGCGGATGCAAACGCGGGCACAGCGACTCT
TTTAGCTCTAACAAGGCGGGTACAATCAAGCGCCAGGGATTTGAAGGGGT
TACATGCAATGACAAGAAGCCGTCAGCGAAATCACAGAAAAATGAAACGA
CAGCCGAAATCGAAAGacgccctttccctttccgaAGGGGAGCTGGTACA
TTCCGCGATCGCTTGTTCCGTGCAACCAATCAGCGCATGTATTTGATTCA
CAACGAAAATTTGAGTACAGAGGGGAACCTACACCGTCGGTTTCATGTGT
CAGGGACTACAGGTAACGTCTATCATGTAGATATTTGTCGCATCCCTACA
TGCGATTGCCCCGATTTTGTGCGCCACACCATCCCCGGTCAAGCCGGGGT
CGTTTGCAAgcacatcctcctcgtctatCTTAAGGTCCTCCGGCTCGCCT
TAAACGACACGCTGCTCCCGCAAAAACGCCTGCTGCAAGACGAGCTGACT
CGCATGTTTGCTCGCTTACCCGGCaaaggaggcgaggaggatgagaagtc
GTGGGGCGATGTCTTGGTCGACGCGAAAGCTCGCGCGGCTTACACGGCCT
TGGTGGATGAGGCTGCGGCCGGAGACGcgggggcgaagaaggacaaAGGA
CAGCAAACGGGGAATCTATGTCTGGATTTGGCCCGGGAAGACGAATGTCC
CGTCTGTTTAGAACAGTTCGACACACAGaagccggaggaggtggtgatcT
GCTATGCCTGCCACAAGCCCACACACGCGCTCTGCTTCCGGACCTGGAAT
GGAGTGAAGATCTCCGAGGGGCTGCCACGCTCCTGCGTCTGGTGCCGGGC
AAGATGGCTAGACCCTGTCCTAGCGGGAGCGAGTGATGGTGCGAAAGCGA
GGGCCGAGAGCCAGGCGGGCTACGTGAATGTGGGGAAGCTCACAGGCcag
ggtgggcgggaggagtaTCAATCCATGTACAGTCGAGGGAGAAATAGATG
GTGGCGAGAGCATGATTTCTGA

Synonyms

Publications