EWM28663.1, cds1907 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28663.1 vs. NCBI_GenBank
Match: gi|585111086|gb|EWM28663.1| (ring finger domain protein [Nannochloropsis gaditana]) HSP 1 Score: 910.212 bits (2351), Expect = 0.000e+0 Identity = 436/436 (100.00%), Postives = 436/436 (100.00%), Query Frame = 0
Query: 1 MIHEKNSGFSNVRVRLLSVNITRGCGQGPSLMIEPPPSPGHTSFGIMNSFQKPKARSHSEVKPPHHTTSHEPDINGSGGGKNGAAGPATRGRHASSAKGGAQSGGCKRGHSDSFSSNKAGTIKRQGFEGVTCNDKKPSAKSQKNETTAEIERRPFPFRRGAGTFRDRLFRATNQRMYLIHNENLSTEGNLHRRFHVSGTTGNVYHVDICRIPTCDCPDFVRHTIPGQAGVVCKHILLVYLKVLRLALNDTLLPQKRLLQDELTRMFARLPGKGGEEDEKSWGDVLVDAKARAAYTALVDEAAAGDAGAKKDKGQQTGNLCLDLAREDECPVCLEQFDTQKPEEVVICYACHKPTHALCFRTWNGVKISEGLPRSCVWCRARWLDPVLAGASDGAKARAESQAGYVNVGKLTGQGGREEYQSMYSRGRNRWWREHDF 436
MIHEKNSGFSNVRVRLLSVNITRGCGQGPSLMIEPPPSPGHTSFGIMNSFQKPKARSHSEVKPPHHTTSHEPDINGSGGGKNGAAGPATRGRHASSAKGGAQSGGCKRGHSDSFSSNKAGTIKRQGFEGVTCNDKKPSAKSQKNETTAEIERRPFPFRRGAGTFRDRLFRATNQRMYLIHNENLSTEGNLHRRFHVSGTTGNVYHVDICRIPTCDCPDFVRHTIPGQAGVVCKHILLVYLKVLRLALNDTLLPQKRLLQDELTRMFARLPGKGGEEDEKSWGDVLVDAKARAAYTALVDEAAAGDAGAKKDKGQQTGNLCLDLAREDECPVCLEQFDTQKPEEVVICYACHKPTHALCFRTWNGVKISEGLPRSCVWCRARWLDPVLAGASDGAKARAESQAGYVNVGKLTGQGGREEYQSMYSRGRNRWWREHDF
Sbjct: 1 MIHEKNSGFSNVRVRLLSVNITRGCGQGPSLMIEPPPSPGHTSFGIMNSFQKPKARSHSEVKPPHHTTSHEPDINGSGGGKNGAAGPATRGRHASSAKGGAQSGGCKRGHSDSFSSNKAGTIKRQGFEGVTCNDKKPSAKSQKNETTAEIERRPFPFRRGAGTFRDRLFRATNQRMYLIHNENLSTEGNLHRRFHVSGTTGNVYHVDICRIPTCDCPDFVRHTIPGQAGVVCKHILLVYLKVLRLALNDTLLPQKRLLQDELTRMFARLPGKGGEEDEKSWGDVLVDAKARAAYTALVDEAAAGDAGAKKDKGQQTGNLCLDLAREDECPVCLEQFDTQKPEEVVICYACHKPTHALCFRTWNGVKISEGLPRSCVWCRARWLDPVLAGASDGAKARAESQAGYVNVGKLTGQGGREEYQSMYSRGRNRWWREHDF 436
BLAST of EWM28663.1 vs. NCBI_GenBank
Match: gi|698803470|ref|XP_009834764.1| (hypothetical protein, variant 1 [Aphanomyces astaci] >gi|574110132|gb|ETV75632.1| hypothetical protein, variant 1 [Aphanomyces astaci]) HSP 1 Score: 152.14 bits (383), Expect = 9.326e-37 Identity = 131/462 (28.35%), Postives = 193/462 (41.77%), Query Frame = 0
Query: 6 NSGFSNVRVRLLSVNITRGCGQGPSLMIEPPPSPGHTSF--GIMNSFQKPKARSHSEVKPPHH-----TTSHEPDINGSGGGKNGAAGPATRGRHASSAKGGAQSGGC--------------------KRGHSDSFSSNKAGTIKRQGFEGVTCNDKKPSAKSQKNETTAEIERRPFPFRRGAGT-FRDRLFRATNQRMYLIHNENLSTEGNLHRRFHVSGTTGNVYHVDICRIPTCDCPDFVRHTIPGQAGVVCKHILLVYLKVLRLALNDTLLPQKRLLQDELTRMFARLPGKGGEEDEKSWGDVLVDAKARAAYTALVDEAAAGDAGAKKDKGQQTGNLCLDLAREDECPVCLEQFDTQKPEEVVICY-ACHKPTHALCFRTWNGVKISEGLPRSCVWCRARWLDPVLAGASDGAKARAESQAGYVNVGKLTGQGGREEYQSMYSRGRNRWWR--EHDF 436
+S F V + Q S M + P HT G+ ++ +P+ ++ PP + + HEP N + + P GR A S + SGG +R H D + + + ++ + KKP ++ N + R +R A +DR+ RA +QRM+LI + + LH+ F V G+TGN+Y V I +P C CPDF++ G +CKHIL VYLK LR+ + QK LL EL +F + S D A AR A+ G G Q +L +CP+C E D +P VV C C H+ CF W + + G+P +C++CRA+W P S KARA GY+N+ + R+ S Y + R+RW R EHDF
Sbjct: 187 SSAFPQTNVLRRFALPSMASMQSQSAMQQSPCQQQHTQHLPGMADATHQPQ-----QLYPPSYGSTSYMSKHEPADNHTNPYPHHPPAPRLHGRAAVSPLFPSPSGGLPQLPPHHQQHVPLASQQQPHRRRHDDDKTDDAMVPVAKRARQSKAT--KKPPGETGSNIPEKRLAR----YRTVASQQTQDRIARAIHQRMFLIEKQ---VKSPLHQTFAVLGSTGNIYTVSIEFVPACTCPDFLK-------GNLCKHILFVYLKCLRVPATSPHVFQKALLTSELQEIF----------ETASQADPTAVANARVVTHYRAALASGASPGTPDLGGVQQKSL-----EAADCPICFEALDDGRP--VVWCKEQCGNNIHSECFGQWEKSRRATGVPLTCIYCRAKWPSP-----SSRGKARARDDQGYMNLAAVANL-PRQRDTSTYRQQRSRWHRHDEHDF 604
BLAST of EWM28663.1 vs. NCBI_GenBank
Match: gi|698803466|ref|XP_009834762.1| (hypothetical protein H257_10031 [Aphanomyces astaci] >gi|574110131|gb|ETV75631.1| hypothetical protein H257_10031 [Aphanomyces astaci]) HSP 1 Score: 140.969 bits (354), Expect = 7.449e-33 Identity = 129/474 (27.22%), Postives = 189/474 (39.87%), Query Frame = 0
Query: 6 NSGFSNVRVRLLSVNITRGCGQGPSLMIEPPPSPGHTSF--GIMNSFQKPKARSHSEVKPPHHTTSHEPDINGSGGGKNGAAGPATRGRHASSAKGGAQSGGC--------------------KRGHSDSFSSNKAGTIKRQGFEGVTCNDKKPSAKSQKNETTAEIERRPFPFRRGAGT-FRDRLFRATNQRMYLIHNENLSTEGNLHRRFHVSGTTGNVYHVDICRIPTCDCPDFVRHTIPGQAGVVCKHIL-----------------LVYLKVLRLALNDTLLPQKRLLQDELTRMFARLPGKGGEEDEKSWGDVLVDAKARAAYTALVDEAAAGDAGAKKDKGQQTGNLCLDLAREDECPVCLEQFDTQKPEEVVICY-ACHKPTHALCFRTWNGVKISEGLPRSCVWCRARWLDPVLAGASDGAKARAESQAGYVNVGKLTGQGGREEYQSMYSRGRNRWWR--EHDF 436
+S F V + Q S M + P HT G+ ++ +P+ + + HEP N + + P GR A S + SGG +R H D + + + ++ + KKP ++ N + R +R A +DR+ RA +QRM+LI + + LH+ F V G+TGN+Y V I +P C CPDF++ G +CKHIL VYLK LR+ + QK LL EL +F + S D A AR A+ G G Q +L +CP+C E D +P VV C C H+ CF W + + G+P +C++CRA+W P S KARA GY+N+ + R+ S Y + R+RW R EHDF
Sbjct: 187 SSAFPQTNVLRRFALPSMASMQSQSAMQQSPCQQQHTQHLPGMADATHQPQQLYPPSYGSTSYMSKHEPADNHTNPYPHHPPAPRLHGRAAVSPLFPSPSGGLPQLPPHHQQHVPLASQQQPHRRRHDDDKTDDAMVPVAKRARQSKAT--KKPPGETGSNIPEKRLAR----YRTVASQQTQDRIARAIHQRMFLIEKQ---VKSPLHQTFAVLGSTGNIYTVSIEFVPACTCPDFLK-------GNLCKHILSVCLPLKSGFCSLSWSRFVYLKCLRVPATSPHVFQKALLTSELQEIF----------ETASQADPTAVANARVVTHYRAALASGASPGTPDLGGVQQKSL-----EAADCPICFEALDDGRP--VVWCKEQCGNNIHSECFGQWEKSRRATGVPLTCIYCRAKWPSP-----SSRGKARARDDQGYMNLAAVANL-PRQRDTSTYRQQRSRWHRHDEHDF 621
BLAST of EWM28663.1 vs. NCBI_GenBank
Match: gi|636610613|ref|XP_008036441.1| (hypothetical protein TRAVEDRAFT_57454 [Trametes versicolor FP-101664 SS1] >gi|392566913|gb|EIW60088.1| hypothetical protein TRAVEDRAFT_57454 [Trametes versicolor FP-101664 SS1]) HSP 1 Score: 132.109 bits (331), Expect = 1.930e-31 Identity = 98/311 (31.51%), Postives = 137/311 (44.05%), Query Frame = 0
Query: 136 KPSAKSQKNETTAEIERRPFPFRRGA-------GTFRDRLFRATNQRMYLIHNENLSTEGNLHRRFHVSGTTGNVYHVDICRIPTCDCPDFVRHTIPGQAGVVCKHILLVYLKVLRLALNDTLLPQKRLLQDELTRMFARLPGKGGEEDEKSWGDVLVDAKARAAYTALVDEAAAGDAGAKKDKGQQTGNLCLDLAREDECPVCLEQFDTQKPEEVVICYACHKPTHALCFRTWNGVKISEGLPRSCVWCRARWLDPVLAGASDGAKARAESQAGYVNVGKLTGQGGREEYQSMY---SRGRNRW-WREHD 435
KP+AK Q+ A+ P P +RGA +R+ R QR ++I TE L F V G+TGNVY V I + P+C CPD ++ G CKHIL ++LKVL++ QK LL EL +FA P + + R AY +A G Q G +ED+CP+C E + C C H CF+ W +CV+CRA+W+ PV AGAS A AE GY+N+ + G + S Y +RGR + +RE++
Sbjct: 43 KPAAKRQRK---AKDPDAPVPEKRGAMFKKACPKNIIERVERVMQQRFFMIDRRRQGTE--LKEEFSVLGSTGNVYTVVIDKKPSCTCPDAMK-------GNHCKHILFIFLKVLQVTQKSGYWYQKALLTSELEEIFAEAPQAPA---------AIAHERIRNAYALATGKAIPS--------GSQKGGKKRLPEKEDDCPICYENMHGVAETLLSFCEECGNGLHKECFQQWANTAKGAA---TCVFCRAKWVAPVAAGASKAAGRSAE---GYINLASVAGVSPARDTSSYYQGPTRGRRYYGFREYE 318
BLAST of EWM28663.1 vs. NCBI_GenBank
Match: gi|1024082588|gb|KZV75479.1| (hypothetical protein PENSPDRAFT_673741 [Peniophora sp. CONT]) HSP 1 Score: 130.568 bits (327), Expect = 3.068e-31 Identity = 93/287 (32.40%), Postives = 127/287 (44.25%), Query Frame = 0
Query: 151 ERRPFPFRRGA-GTFRDRLFRATNQRMYLIHNENLSTEGNLHRRFHVSGTTGNVYHVDICRIPTCDCPDFVRHTIPGQAGVVCKHILLVYLKVLRLALNDTLLPQKRLLQDELTRMFARLPGKGGEEDEKSWGDVLVDAKARAAYTALVDEAAAGDAGAKKDKGQQTGNLCLDLAREDECPVCLEQFDTQKPEEVVICYACHKPTHALCFRTWNGVKISEGLPRSCVWCRARWLDPVLAGASDGAKARAESQAGYVNVGKLTGQGGREEYQSMYSRGRNRWWREHDF 436
E+R F++ T +R+ R QR ++I E T G L F V G+TGNVY V I ++P+C CPD Q G CKHIL V+LKVL++ QK LL EL ++F P + +A+A A A + A AG Q+ ED+CPVC E +++ C CH H +CF W K L +CVWCRA W + GA+ GYVN+ + G RE S Y +G R R + +
Sbjct: 21 EKRAARFKKACPKTILERVQRVREQRFFMI--ERRRTIGQLKEEFDVLGSTGNVYTVCIDQLPSCTCPD-------SQKGNHCKHILFVFLKVLQVTEASGFWYQKALLSSELEQIFTAAP-------------LAPNAEAHPAIKAALARATGQTAGPDTSSKQKMP------GPEDDCPVCYEGMHGVDAKKLTFCDVCHNALHKVCFEQWEKSKAGGKL--TCVWCRATWKN-----MHTGARGGVTMSEGYVNLADIAGV-SRERDTSSYYQGPRRGQRHYGY 271
BLAST of EWM28663.1 vs. NCBI_GenBank
Match: gi|597972843|ref|XP_007361306.1| (hypothetical protein DICSQDRAFT_50200 [Dichomitus squalens LYAD-421 SS1] >gi|395333667|gb|EJF66044.1| hypothetical protein DICSQDRAFT_50200 [Dichomitus squalens LYAD-421 SS1]) HSP 1 Score: 130.954 bits (328), Expect = 3.805e-31 Identity = 91/293 (31.06%), Postives = 135/293 (46.08%), Query Frame = 0
Query: 154 PFPFRRGA-------GTFRDRLFRATNQRMYLIHNENLSTEGNLHRRFHVSGTTGNVYHVDICRIPTCDCPDFVRHTIPGQAGVVCKHILLVYLKVLRLALNDTLLPQKRLLQDELTRMFARLPGKGGEEDEKSWGDVLVDAKARAAYTALVDEAAAGDAGAKKDKGQQTGNLCLDLAREDECPVCLEQFDTQKPEEVVICYACHKPTHALCFRTWNGVKISEGLPRSCVWCRARWLDPVLAGASDGAKARAESQAGYVNVGKLTGQGGREEYQSMY---SRGRNRWWREHDF 436
P P +RGA +R R +QR Y+I E L F V G+TGNVY V I + P+C CPD ++ G CKHIL ++LKVL+++ QK LL EL +FAR P + + + AY + A +G++K K + G ++D CPVC E ++ + + C C H CF+ W +I++G P +C +CRA+W P GA RA+ GY+N+ G + S Y +RGR R++ D+
Sbjct: 45 PVPEKRGAMFKKVCPKNIIERAVRVRDQRFYMIDRRRRGNE--LREEFSVLGSTGNVYSVVIDKKPSCTCPDALK-------GNHCKHILFIFLKVLQVSQKSGHWYQKALLTSELEDIFARAPRDPA---------AVAHERIQEAYAHATGKNVA--SGSQKTKRRLPG-------KDDMCPVCFEDMESVDEKTLTFCDECGNGLHKDCFQQWMNTQINQGKPATCTFCRAKWNVPT--GAGPARAGRAQISEGYLNLSAAAGIDPVRDTSSYYHGPTRGR-RYYGYQDY 307
BLAST of EWM28663.1 vs. NCBI_GenBank
Match: gi|1023275026|gb|KZT69892.1| (hypothetical protein DAEQUDRAFT_726214 [Daedalea quercina L-15889]) HSP 1 Score: 130.568 bits (327), Expect = 1.876e-30 Identity = 96/305 (31.48%), Postives = 138/305 (45.25%), Query Frame = 0
Query: 137 PSAKSQKNETTAEI----ERRPFPFR-RGAGTFRDRLFRATNQRMYLIHNENLSTEGNLHRRFHVSGTTGNVYHVDICRIPTCDCPDFVRHTIPGQAGVVCKHILLVYLKVLRLALNDTLLPQKRLLQDELTRMFARLPGKGGEEDEKSWGDVLVDAKARAAYTALVDEAAAGDAGAKKDKGQQTGNLCLDLAREDECPVCLEQFDTQKPEEVVICYACHKPTHALCFRTWNGVKISEGLPRSCVWCRARWLDPVLAGASDGAKARAESQAGYVNVGKLTGQGGREEYQSMYSRGRNRWWREHDF 436
P AK Q+ + ++ E+R +R + DRL R +QR +LI E L F V G+TGNVY V I + P+C+CPD + G CKHIL V+LKV+++ + QK LL EL +F P + L +A R AY +A+ A + +K + G ED+CP+C E+ +V C AC H CF W +G P +CV+CRA+W+ GA A + S GYVN+ + G + S Y G NR R + +
Sbjct: 88 PPAKRQRKKNNVDVAASQEKRAARYRAKCPQNILDRLDRVISQRFFLIDRHRNGDE--LREEFSVLGSTGNVYTVIIDKTPSCNCPDATK-------GNHCKHILFVFLKVVQVTKDSGYWYQKALLTSELQNIFDHAPLAP---------NALANAHVREAYARATGKASTSAAAKQPEKKRVPGA-------EDDCPICYEKMHGAAAATLVWCEACGNALHKECFTQWAATARQKGQPVTCVFCRAKWV-----GAGGSASGGSRSYEGYVNLADVAGVSTDRDTSSYY-HGPNRGKRHYGY 361
BLAST of EWM28663.1 vs. NCBI_GenBank
Match: gi|1112953962|gb|OJT07851.1| (Mitogen-activated protein kinase kinase kinase 1 [Trametes pubescens]) HSP 1 Score: 128.642 bits (322), Expect = 2.523e-30 Identity = 97/297 (32.66%), Postives = 131/297 (44.11%), Query Frame = 0
Query: 135 KKPSAKSQKNETTAEIERRPFPFRRGA-------GTFRDRLFRATNQRMYLIHNENLSTEGNLHRRFHVSGTTGNVYHVDICRIPTCDCPDFVRHTIPGQAGVVCKHILLVYLKVLRLALNDTLLPQKRLLQDELTRMFARLPGKGGEEDEKSWGDVLVDAKARAAYTALVDEAAAGDAGAKKDKGQQTGNLCLDLAREDECPVCLEQFDTQKPEEVVICYACHKPTHALCFRTW-NGVKISEGLPRSCVWCRARWLDPVLAGASDGAKARAESQAGYVNVGKLTGQGGREEYQSMY 423
+KP+ K Q+ A+ P P +RGA +R+ R QR ++I TE L F V G+TGNVY V I + P+C CPD G CKHIL ++LKVL++ QK LL EL +FA P A A A+ + + A A Q++G L +ED+CP+C E +V C C H CF+ W N K + +CV+CRA W+ PV G G+KA + S GY+N L G GR S Y
Sbjct: 46 QKPAPKRQRK---AKDPDAPVPEKRGAIFKKACPKNIIERVERVMQQRFFMIDRRRQGTE--LKEEFSVLGSTGNVYTVVIDKKPSCTCPD-------ASKGNHCKHILFIFLKVLQVTQKSGYWYQKALLTSELVEIFAEAP----------------QAPAAIAHERIRNAYAQATGKAIPSSSQKSGKKRLP-GKEDDCPICYENMHGASETLLVFCEECGNGLHKECFQQWANAAKGAA----TCVFCRAEWVAPVAVG---GSKAASRSAEGYIN---LAGVAGRYRVPSAY 303
BLAST of EWM28663.1 vs. NCBI_GenBank
Match: gi|1183371710|gb|ORX97519.1| (hypothetical protein K493DRAFT_314040 [Basidiobolus meristosporus CBS 931.73]) HSP 1 Score: 128.642 bits (322), Expect = 3.201e-30 Identity = 92/267 (34.46%), Postives = 126/267 (47.19%), Query Frame = 0
Query: 151 ERRPFPFRRGA-GTFRDRLFRATNQRMYLIHNENLSTEGNLHRRFHVSGTTGNVYHVDICRIPTCDCPDFVRHTIPGQAGVVCKHILLVYLKVLRLALNDTLLPQKRLLQDELTRMFARLPGKGGEEDEKSWGDV--LVDAKARAAYTALVDEAAAGDAGAKKDKGQQTGNLCLDLAREDECPVCLEQFDTQKP-EEVVIC-YACHKPTHALCFRTWNGVKISEGLPRSCVWCRARWLDPVLAGASDGAKARAESQAGYVNVGKLTG 412
E+R FR + R+ RA NQRM+L+ E ++ + ++F V G+TGNVY VD+ IP C+CPDFVR G +CKHIL VYLKVLR++ + Q LL EL + P DV L + K R AY A G + + L A ECP+C E+ KP +++V C C H C+ W+ K G +CV+CRA W DG K + S GY+N+G + G
Sbjct: 84 EKRKKRFRSSCPEKIQQRIERAKNQRMFLLSREVIA---HAQQKFAVLGSTGNVYSVDLGHIPNCNCPDFVR-------GNLCKHILFVYLKVLRVSSESPYIYQAALLTSELEEILTNAP------------DVTSLANEKTRKAYEAHC------------QGGAEESDSSLRKAITGECPICYEEM---KPTDQLVWCKVQCGNNVHEECWSHWSLAKRKSGEQVTCVYCRAEW---------DGEKGKTRS--GYLNLGNIQG 302
BLAST of EWM28663.1 vs. NCBI_GenBank
Match: gi|170095117|ref|XP_001878779.1| (predicted protein [Laccaria bicolor S238N-H82] >gi|164646083|gb|EDR10329.1| predicted protein [Laccaria bicolor S238N-H82]) HSP 1 Score: 128.642 bits (322), Expect = 9.552e-30 Identity = 75/247 (30.36%), Postives = 110/247 (44.53%), Query Frame = 0
Query: 164 FRDRLFRATNQRMYLIHNENLSTEGNLHRRFHVSGTTGNVYHVDICRIPTCDCPDFVRHTIPGQAGVVCKHILLVYLKVLRLALNDTLLPQKRLLQDELTRMFARLPGKGGEEDEKSWGDVLVDAKARAAYTALVDEAAAGDAGAKKDKGQQTGNLCLDLAREDECPVCLEQFDTQKPEEVVICYACHKPTHALCFRTWNGVKISEGLPRSCVWCRARWLDPVLAGASDGAKARAESQAGYVNVGKL 410
+DR+ R QR ++I E L F V G+TGNVY V I R P C+CPD +R G CKHI+ V+LKVL++ L QK LL EL +FAR P + + A R + + A G K+ G ED+CP+C + + +V C C H CF W ++G +CVWCR+ W P + + + ++ + Y+N+G +
Sbjct: 135 IQDRVGRVMTQRFFMIERRRNGDE--LQEEFSVLGSTGNVYTVTIGRKPKCNCPDTIR-------GNHCKHIMFVFLKVLQVPQTSNLWYQKGLLTSELETIFARAPLAPNDVTNPRLREAYDRALGRPSTSTAPAAAPESPTGKKRIPGP-----------EDDCPICYDGMEGAAEASLVFCDECGNALHQECFEQWRQTSQNKGKELTCVWCRSPWATPAVRQPKPTSSSPSKRKGPYLNLGIM 361 The following BLAST results are available for this feature:
BLAST of EWM28663.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|