rna1911, rna1911 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1911
Unique Name	rna1911
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	755
Alignment location	CM002458.1:452225..454300 -

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Properties


Property Name	Value
Product	amino acid permease-associated region
Orig transcript id	gnl\|cribi\|Naga_100002g110.4793.mrna
Orig protein id	gnl\|cribi\|Naga_100002g110.4793
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:452225..454300 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100002g110	gene1824	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1911	rna1911-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28674.1	cds1906	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:452225..454300-
coding sequence from alignment at CM002458.1:452225..454300-

mRNA sequence

>rna1911 ID=rna1911|Name=rna1911|organism=Nannochloropsis gaditana|type=mRNA|length=755bp
CGGGCATCTGACTTCTTGCCCACGCTCATCGGTCCGCCGTTGTCGAGTCC
ATCCAAAGGCTTAGTAACGGGGCCGTTCGTGTCTCTGAGGGTCGGCCATG
GTGTGCATGTTGCTATCCGGCTGTGCTCACCACCTTTGCCTTTCCTCTGC
TTCCTTCACTGCCCCTTTCAGACGCTCTATAACACGAGTGAGACCAAGCT
TATTCCCAATGTCTGTAATAACTAAGTTCTGGGATGGCTTGCGCTCATCT
TACACGAAACTGGTCGTCGGAGAACTCAACAACTATGGATTACGCTATCA
AGATCTGTTCCTAGAGGATCAGGCAGTGACGAAAGCCATCCACCATTTGT
CTCCGGAAGAGCAAGTGGCCCGGGAGCGACGCATCAAACGAGCGATCGAG
ATCTCTCTGAAGAAGAAGTACCTCCCTGCGGATCTGCAAAAAATGCAAAC
CCCTTTGAAACCGTACTTGAGTCACGCACTGGACGAGGTAGAGGCGGAGG
AAACGGAGCGAAAGCTCCTGAACCCGTAGGCACAGGAGGGATGGTGGGAG
TAGGAGCGCGAGTGAGGAGGGCAGGCCAGGCAGGGTGTGATTGTACGTAA
TAAGTTGGCATGGGGTGCGTTGTTATCGCCTTTCGCACTTGCTGCTTTGG
GTAATCGAGAGAGGCTGTGAGGAGAAGGCGACCCAGCGGCCTTGCGGCAG
CCTCAGGAGGGAATGGGAGCAAGCAGGGAAAAGCAGGAATACACGCACGA
CGCGC

protein sequence of rna1911

>rna1911-protein ID=rna1911-protein|Name=rna1911|organism=Nannochloropsis gaditana|type=polypeptide|length=612bp
MGLNGRPASFWRHIHDRALHLKSEAGADPDTEGDDGHVHFQHLKRQLGFW
QLTMLGVGGSIGAGVFSLTGVAAAGAGPAVVFSYIFSGIIAAIDALCYSE
MASRYPQAGTVFLYTHVTFGELPALLVSINLLVDYTVAAALISRSFALYL
VDFLKHAGLGPVPAWLAPVPVTELFSLSLVAPLLLLLHTLVLCRGTETGA
VLNAILTSAKVAVILLVCALGLFHVQPRHWLPFFPRGLEAVFRTSSTVFF
SYVGFDTIASSSEECQDPLRDMPRAILVSLATCVGIYCAVCLVLTGMVPF
DAIDLAAPLSSAFAGLGLAWVQAVISLGGVVGLATTLLIGLFAQARIWLG
IARDGLLPAALARIHPRFKTPVNAQALCGFLPMALAAFFNVRLLSELLDI
GVILAYGTVCAALLLQRSTRRVYTTRCLVALLPACALPLSLHKYKASTGI
LALDTAIWLSPLFVLVPLLRPGDYLAPPPGVCFACPAVPYVPVAGVVLNV
YLAVNLPAVAWARLFILWTGILLYYVWTEYGYFLRGDDRRDVGARRTRKE
RPKDVTENGKGPLSPTDSLRRRHGGVGEFGKGQQLGRWGEGLDGKKGENL
LRKPLLDGEDIV

mRNA from alignment at CM002458.1:452225..454300-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1911 ID=rna1911|Name=rna1911|organism=Nannochloropsis gaditana|type=mRNA|length=2076bp|location=Sequence derived from alignment at CM002458.1:452225..454300- (Nannochloropsis gaditana)
ATGGGATTGAACGGGCGGCCGGCGTCGTTTTGGAGACACATACATGACCG
TGCACTTCATTTGAAAAGTGAGGCAGGTGAGTCGTCGATCTTTTCTAGCA
CGGTACTCAAAGTGTTGGCTCAAATGGACGATTGTCTCGACCATCTCGAT
CATAAATGGGCTTTAACTCATACGATCAAGGCATACGACTGCCGTTAATT
GCAGGAGCGGATCCTGACACCGAGGGGGACGATGGCCATGTCCATTTTCA
GCATCTGAAGCGGCAGCTGGGCTTCTGGCAACTGACCATGTTGGGCGTAG
GCGGGAGTATTGGAGCGGGCGTCTTCTCTCTAACCGGAGTAGCTGCTGCA
GGTGCTGGTCCTGCTGTCGTATTTAGTTACATATTCAGTGGTATTATCGC
GGCAATAGACGCTTTGTGTTATTCGGAAATGGCGTCGCGGTACCCCCAGG
CGGGCACCGTCTTCCTCTATACCCACGTCACCTTCGGGGAGCTGCCTGCG
CTGCTTGTCAGCATCAACCTGCTCGTCGACTATACTGTAGCTGCTGCTTT
GATATCGCGCTCCTTCGCCCTGTACCTGGTGGACTTCCTGAAGCACGCCG
GGCTCGGTCCCGTCCCCGCCTGGCTCGCCCCAGTGCCTGTCACTGAGCTC
TTCAGTCTCAGCCTGGTCGCACCCCTCCTCCTCCTCCTCCACACCCTCGT
GCTCTGCAGGGGGACAGAGACGGGTGCCGTCCTGAACGCGATTCTTACCA
GCGCCAAGGTGGCAGTGATCCTGCTCGTCTGCGCCCTCGGCCTCTTCCAT
GTCCAGCCCCGGCACTGGCTCCCCTTCTTCCCCCGGGGCCTTGAGGCCGT
CTTCCGCACGTCCTCCACCGTCTTCTTCTCCTACGTGGGCTTTGACACGA
TCGCCTCCTCCTCGGAGGAATGTCAGGACCCCCTGCGTGACATGCCTCGA
GCCATCCTGGTCTCCCTAGCCACCTGCGTCGGCATCTACTGCGCCGTCTG
TCTGGTCCTCACGGGCATGGTGCCCTTCGACGCCATCGACCTGGCCGCCC
CCCTGTCCTCGGCCTTCGCGGGTCTGGGCCTCGCGTGGGTGCAGGCCGTC
ATCTCCCTCGGGGGGGTGGTGGGGCTCGCCACCACCCTCCTCATAGGCCT
CTTTGCCCAGGCCCGCATCTGGCTAGGCATCGCCCGAGACGGTCTTCTCC
CCGCGGCGCTCGCTCGCATCCACCCACGCTTTAAGACGCCGGTGAACGCA
CAGGCGTTGTGCGGGTTCCTACCCATGGCCCTGGCCGCGTTTTTCAACGT
CAGGCTTCTCTCGGAGCTCCTGGACATCGGTGTGATTCTGGCATACGGAA
CCGTCTGCGCCGCCCTGCTCCTGCAGCGGTCCACAAGACGCGTTTACACC
ACCCGCTGTCTCGTCGCCCTGCTTCCGGCCTGTGCTCTGCCTCTTTCCCT
GCACAAATACAAGGCCAGCACTGGAATCCTTGCTTTAGACACGGCAATCT
GGCTCTCGCCCCTCTTCGTGCTTGTGCCCCTGCTCCGGCCTGGGGACTAC
CTAGCCCCACCGCCGGGGGTCTGTTTCGCCTGCCCCGCGGTACCCTACGT
GCCTGTGGCGGGTGTTGTCTTGAATGTGTACTTAGCGGTTAACCTTCCAG
CTGTCGCTTGGGCCCGCCTCTTCATACTCTGGACTGGCATCCTTCTTTAC
TACGTATGGACAGAGTATGGGTATTTCCTGAGGGGCGACGACAGAAGGGA
TGTGGGAGCAAGACGCACACGAAAGGAGCGCCCAAAAGATGTCACCGAAA
ATGGCAAGGGGCCGCTCTCACCGACAGACTCCCTTCGCCGTCGCCACGGT
GGAGTGGGGGAATTCGGAAAGGGACAGCAATTGGGCAGGTGGGGGGAAGG
ATTGGATGGGAAAAAAGGAGAAAATTTGTTGCGGAAGCCATTGCTGGATG
GCGAAGACATTGTATGATTGTACATGAAAAAATCTGTGCATAAAAATACG
AGCAAGCATCTGATCCGCCAAGCCACATAAAGAAAGAAGTGGCTAAAAAA
ATACAGACGATTGCGTAAATAAACGT

Coding sequence (CDS) from alignment at CM002458.1:452225..454300-

>rna1911 ID=rna1911|Name=rna1911|organism=Nannochloropsis gaditana|type=CDS|length=3678bp|location=Sequence derived from alignment at CM002458.1:452225..454300- (Nannochloropsis gaditana)
GAGCGGATCCTGACACCGAGGGGGACGATGGCCATGTCCATTTTCAGCAT
CTGAAGCGGCAGCTGGGCTTCTGGCAACTGACCATGTTGGGCGTAGGCGG
GAGTATTGGAGCGGGCGTCTTCTCTCTAACCGGAGTAGCTGCTGCAGGTG
CTGGTCCTGCTGTCGTATTTAGTTACATATTCAGTGGTATTATCGCGGCA
ATAGACGCTTTGTGTTATTCGGAAATGGCGTCGCGGTACCCCCAGGCGGG
CACCGTCTTCCTCTATACCCACGTCACCTTCGGGGAGCTGCCTGCGCTGC
TTGTCAGCATCAACCTGCTCGTCGACTATACTGTAGCTGCTGCTTTGATA
TCGCGCTCCTTCGCCCTGTACCTGGTGGACTTCCTGAAGCACGCCGGGCT
CGGTCCCGTCCCCGCCTGGCTCGCCCCAGTGCCTGTCACTGAGCTCTTCA
GTCTCAGCCTGGTCGCACCCCTCCTCCTCCTCCTCCACACCCTCGTGCTC
TGCAGGGGGACAGAGACGGGTGCCGTCCTGAACGCGATTCTTACCAGCGC
CAAGGTGGCAGTGATCCTGCTCGTCTGCGCCCTCGGCCTCTTCCATGTCC
AGCCCCGGCACTGGCTCCCCTTCTTCCCCCGGGGCCTTGAGGCCGTCTTC
CGCACGTCCTCCACCGTCTTCTTCTCCTACGTGGGCTTTGACACGATCGC
CTCCTCCTCGGAGGAATGTCAGGACCCCCTGCGTGACATGCCTCGAGCCA
TCCTGGTCTCCCTAGCCACCTGCGTCGGCATCTACTGCGCCGTCTGTCTG
GTCCTCACGGGCATGGTGCCCTTCGACGCCATCGACCTGGCCGCCCCCCT
GTCCTCGGCCTTCGCGGGTCTGGGCCTCGCGTGGGTGCAGGCCGTCATCT
CCCTCGGGGGGGTGGTGGGGCTCGCCACCACCCTCCTCATAGGCCTCTTT
GCCCAGGCCCGCATCTGGCTAGGCATCGCCCGAGACGGTCTTCTCCCCGC
GGCGCTCGCTCGCATCCACCCACGCTTTAAGACGCCGGTGAACGCACAGG
CGTTGTGCGGGTTCCTACCCATGGCCCTGGCCGCGTTTTTCAACGTCAGG
CTTCTCTCGGAGCTCCTGGACATCGGTGTGATTCTGGCATACGGAACCGT
CTGCGCCGCCCTGCTCCTGCAGCGGTCCACAAGACGCGTTTACACCACCC
GCTGTCTCGTCGCCCTGCTTCCGGCCTGTGCTCTGCCTCTTTCCCTGCAC
AAATACAAGGCCAGCACTGGAATCCTTGCTTTAGACACGGCAATCTGGCT
CTCGCCCCTCTTCGTGCTTGTGCCCCTGCTCCGGCCTGGGGACTACCTAG
CCCCACCGCCGGGGGTCTGTTTCGCCTGCCCCGCGGTACCCTACGTGCCT
GTGGCGGGTGTTGTCTTGAATGTGTACTTAGCGGTTAACCTTCCAGCTGT
CGCTTGGGCCCGCCTCTTCATACTCTGGACTGGCATCCTTCTTTACTACG
TATGGACAGAGTATGGGTATTTCCTGAGGGGCGACGACAGAAGGGATGTG
GGAGCAAGACGCACACGAAAGGAGCGCCCAAAAGATGTCACCGAAAATGG
CAAGGGGCCGCTCTCACCGACAGACTCCCTTCGCCGTCGCCACGGTGGAG
TGGGGGAATTCGGAAAGGGACAGCAATTGGGCAGGTGGGGGGAAGGATTG
GATGGGAAAAAAGGAGAAAATTTGTTGCGGAAGCCATTGCTGGATGGCGA
AGACATTGTATGAATGGGATTGAACGGGCGGCCGGCGTCGTTTTGGAGAC
ACATACATGACCGTGCACTTCATTTGAAAAGTGAGGCAGGAGCGGATCCT
GACACCGAGGGGGACGATGGCCATGTCCATTTTCAGCATCTGAAGCGGCA
GCTGGGCTTCTGGCAACTGACCATGTTGGGCGTAGGCGGGAGTATTGGAG
CGGGCGTCTTCTCTCTAACCGGAGTAGCTGCTGCAGGTGCTGGTCCTGCT
GTCGTATTTAGTTACATATTCAGTGGTATTATCGCGGCAATAGACGCTTT
GTGTTATTCGGAAATGGCGTCGCGGTACCCCCAGGCGGGCACCGTCTTCC
TCTATACCCACGTCACCTTCGGGGAGCTGCCTGCGCTGCTTGTCAGCATC
AACCTGCTCGTCGACTATACTGTAGCTGCTGCTTTGATATCGCGCTCCTT
CGCCCTGTACCTGGTGGACTTCCTGAAGCACGCCGGGCTCGGTCCCGTCC
CCGCCTGGCTCGCCCCAGTGCCTGTCACTGAGCTCTTCAGTCTCAGCCTG
GTCGCACCCCTCCTCCTCCTCCTCCACACCCTCGTGCTCTGCAGGGGGAC
AGAGACGGGTGCCGTCCTGAACGCGATTCTTACCAGCGCCAAGGTGGCAG
TGATCCTGCTCGTCTGCGCCCTCGGCCTCTTCCATGTCCAGCCCCGGCAC
TGGCTCCCCTTCTTCCCCCGGGGCCTTGAGGCCGTCTTCCGCACGTCCTC
CACCGTCTTCTTCTCCTACGTGGGCTTTGACACGATCGCCTCCTCCTCGG
AGGAATGTCAGGACCCCCTGCGTGACATGCCTCGAGCCATCCTGGTCTCC
CTAGCCACCTGCGTCGGCATCTACTGCGCCGTCTGTCTGGTCCTCACGGG
CATGGTGCCCTTCGACGCCATCGACCTGGCCGCCCCCCTGTCCTCGGCCT
TCGCGGGTCTGGGCCTCGCGTGGGTGCAGGCCGTCATCTCCCTCGGGGGG
GTGGTGGGGCTCGCCACCACCCTCCTCATAGGCCTCTTTGCCCAGGCCCG
CATCTGGCTAGGCATCGCCCGAGACGGTCTTCTCCCCGCGGCGCTCGCTC
GCATCCACCCACGCTTTAAGACGCCGGTGAACGCACAGGCGTTGTGCGGG
TTCCTACCCATGGCCCTGGCCGCGTTTTTCAACGTCAGGCTTCTCTCGGA
GCTCCTGGACATCGGTGTGATTCTGGCATACGGAACCGTCTGCGCCGCCC
TGCTCCTGCAGCGGTCCACAAGACGCGTTTACACCACCCGCTGTCTCGTC
GCCCTGCTTCCGGCCTGTGCTCTGCCTCTTTCCCTGCACAAATACAAGGC
CAGCACTGGAATCCTTGCTTTAGACACGGCAATCTGGCTCTCGCCCCTCT
TCGTGCTTGTGCCCCTGCTCCGGCCTGGGGACTACCTAGCCCCACCGCCG
GGGGTCTGTTTCGCCTGCCCCGCGGTACCCTACGTGCCTGTGGCGGGTGT
TGTCTTGAATGTGTACTTAGCGGTTAACCTTCCAGCTGTCGCTTGGGCCC
GCCTCTTCATACTCTGGACTGGCATCCTTCTTTACTACGTATGGACAGAG
TATGGGTATTTCCTGAGGGGCGACGACAGAAGGGATGTGGGAGCAAGACG
CACACGAAAGGAGCGCCCAAAAGATGTCACCGAAAATGGCAAGGGGCCGC
TCTCACCGACAGACTCCCTTCGCCGTCGCCACGGTGGAGTGGGGGAATTC
GGAAAGGGACAGCAATTGGGCAGGTGGGGGGAAGGATTGGATGGGAAAAA
AGGAGAAAATTTGTTGCGGAAGCCATTGCTGGATGGCGAAGACATTGTAT
GAATGGGATTGAACGGGCGGCCGGCGTCGTTTTGGAGACACATACATGAC
CGTGCACTTCATTTGAAAAGTGAGGCAG

Synonyms

Publications