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Properties
| Property Name | Value |
|---|
| Product | geranylgeranyl pyrophosphate synthase |
| Orig transcript id | gnl|cribi|Naga_100002g113.4893.mrna |
| Orig protein id | gnl|cribi|Naga_100002g113.4893 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 1; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002458.1 | supercontig | CM002458.1:448318..451347 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna1909 ID=rna1909|Name=rna1909|organism=Nannochloropsis gaditana|type=mRNA|length=3417bp
CCAAACGTCACCACAGGTTTAGATGTCAAAGCTCCTCCGTTGCCGTACCT
GACTCCACCGTTCATGGCCCCGTTCTCGTAAGAGTGACTGTGGCTCGCTA
CATCTTGAAATGACATGGGTGCAAGAACTTCAAAGTCTGTTGAGAGCGGG
CGGGATGGAGCAGAGAGGCGAAGCCAGAGGCCACAGTGGAACAGCCTGTA
CCTAGACGGAAAAAGTGCCTACGTAAATTTGCCAGAAACAGTTGAGGCGC
ACCCAAATCCAGCAATAACATAGAACGAGTTGGCAGGAAGGTGAAATGCC
ACCATGGCGCCTCGAGTTTGTTCGCCGTGACAGGCAGGCAGAACGCGGCA
GCATCATGACGGGGGGGTCTGGGGAGGGCTCGCCTTTTGCTGCCCCGGGG
TCATGTCTTTGCCGTCATATTGGCCCTCCTTTGGGTGCCTTAAGGCTTTG
CTGCGTCAGAATGGATGAGAAGAGAGCGTGACATGCTGCGCTTCGTCGCG
GCAGGTGGCGCCGGACAGTCTTGCGTCTTTTACGCGTTTCTGTGCTCCTT
CCCCCTTCGAGTGGCGGAGATCCTCGGACAAGTCAGCTTGAAGCCCGGTC
CCGCGCCAGCCTGAGGGGGCCCTCCACCCTTTTGGGCAATTTTCACGCAC
GTTTCCGTATTCAAAGTGCTTATGTACGCTCTTGTATGATGTAGGATAAT
AATTGGTGGAGATATCAACTTTTTGAAGACTTACTCCACCACTCATCCTC
TTTCCTTCACACGTACGGCAGTGAGTTAGGGGATCCATCGTGAAAACTTA
TCCAGACACCGAAGAAAAGGAAAATAGACAGTAATTATGGTAGGATTCAC
TACATCAACATGCTTGGTGCTATCCTTAGCAGCTCTGAGCGGCACGCGTA
CCACGGGTAGGTTGTTGCTTCAAATGTTAGGCATCTAGGCGGACCTCGAC
TCGATCTTCGAGGGACCTGCTCCTCATGCTCTGTGCCTTTGCATCTTGCA
TGCACGGCCCAATCTTTTTTTGTTCTCTCGTTGAGGCATATTTGGATATG
CAAGGCGCTCCGAAGCAATTGATCCAGGGAAAGTGCGGGCAAAACTTGCG
GTGCAACTCCGCTTTTTCACAATCTTCTCGTCGCTCTTCAGTCTTGCTCA
GCCGTGTGTTTCAATGTTCATCAACCCACAGCTTTCCAGCCGGCGGCAAG
ACCACCTGCCTCTTCTTGTCACTCTGGCACCCCGTCGGTCTCCGGCCCAT
GCAGCACCAACACCAGGCGCCACCCCCGCGGCTGGGTTATGGCGGCGGCA
GCCACCACCGCAGACGCCCACAGCACCAGCCGAACCTCCTCTCCCTCTGC
CGCCGCCTCCGCCAGCAGCCTGCCCGCCTTTGATTTGAACAAGTACCTGC
TCGACAAGAAGGACGCAGTGGAAAGCGCGTTGGATGCCTCGCTCCAAGTG
ACCTCGCCGCAAGTTGCGAAGATCACCGAGTCCATGCGCTACTCCCTTCT
GGCGGGAGGCAAGCGGATACGGCCGATCATGTGCATCGCCGCCTGTGAGA
TGGCTGGCGGGACAGCCGAAGACGCGATGGCAGCAGCTGTCGCCCTGGAG
ATGATCCACACGATGAGCCTTATCCACGACGACCTGCCCTCCATGGACAA
CGACTCCCTGCGTCGGGGCAAGCCCACGAACCATGTCATCTACGGCGAGG
ACGTGGCTATTCTGGCGGGAGATGCGCTGCTGTCCACCGCCTTCGAGCAC
GTGGCCAAGCACACCCCGTCGCACGTGCCTGCGGAACGCGTCGTGAGTGT
GATCGCGCGCTTGGCCGCCTCGGTGGGGGCGACGGGGCTGGCGGGCGGGC
AGGTGATGGATTTGGAGTGCGAGGGAAAGGAAGGCGTGGGGCTAGAGGAG
CTAACCTGGATCCACACGCACAAGACGGCGGCCCTGCTGAAGGTGAGCGT
GGCAGCGGGGGCGATTCTGGGAGGGGCAAGCGCGGAGGAGGTGGAGGCGT
GCGAGACCTACGCCCTGGACATCGGGCTGGCCTTCCAGGTGGCGGACGAC
ATCCTGGACGTGACCGCGTCCACGGAGGCGCTGGGCAAGACGGCGGGGAA
GGATCTGAACATGGACAAGACCACCTACCCGAAGCTCCTGGGGCTGGAGG
GGAGCCGGGAGGAGGCGAGGCGGCTGGTGGGAGAGGCCAAGGCGGCCCTG
GGCCGGTTCGGAGGTCGGGCCGCGCCGCTTTTGGCGATCGCCGACTACAT
TGTGGAGAGGAAGAACTAGGAAGGGAGGGCGGGAACGGGTGTCGCGTGGG
GCGGGGCGGCCGCAGGAGGGACCGTGGGCGACTGGGAGTGACGGAAGAAG
CTTGCGGAGCGAGGACCGGGTGGCGGCGACGCATGGGAGGCGAGAGGCTG
CGCGGTGGGAACGGAGGGGGCCGGCGTCGGGATATTGGTGAGAAGGTGAC
ACGTGGGTTGCGCCCTGCGAAGAGAAGGGAAGAAGCGGGAGGCAGGGTAT
GGAGGGAGGGCGACGTCGGGGGGCTTGTACAGACCAGTGTCCTAAACCTC
CTATTGAGACGCGAGGGGCGAAGAGGACATACGTACGGAAGAGGAAAAGA
ACGGAAGAGATGCCTGCGGGGACTGGCCGAGTGGGTGTCGTCGGGGGGCA
TGTCATGCTCTCATGCCAGAAAGAGGACCCCCGAACAATGAGAAAGAAGG
AGAAGGGTGCTTGTTTGCGGTTCGAACATGACTGCGTGGCGGCGGGGGAT
GGTAAATGCAGGTGGCGTGTCAGATTGAGGAAATGGAGGGCTCGAAATCA
TGAAAGAAAACGGACGGAGGTGGGGCCACAGAAGTGGTCCGGGTAACCCC
GATGGCGCGTCGTGCGTGTATTCCTGCTTTTCCCTGCTTGCTCCCATTCC
CTCCTGAGGCTGCCGCAAGGCCGCTGGGTCGCCTTCTCCTCACAGCCTCT
CTCGATTACCCAAAGCAGCAAGTGCGAAAGGCGATAACAACGCACCCCAT
GCCAACTTATTACGTACAATCACACCCTGCCTGGCCTGCCCTCCTCACTC
GCGCTCCTACTCCCACCATCCCTCCTGTGCCTACGGGTTCAGGAGCTTTC
GCTCCGTTTCCTCCGCCTCTACCTCGTCCAGTGCGTGACTCAAGTACGGT
TTCAAAGGGGTTTGCATTTTTTGCAGATCCGCAGGGAGGTACTTCTTCTT
CAGAGAGATCTCGATCGCTCGTTTGATGCGTCGCTCCCGGGCCACTTGCT
CTTCCGGAGACAAATGGTGGATGGCTTTCGTCACTGCCTGATCCTCTAGG
AACAGATCTTGATAGCGTAATCCTGTGTGACGGTAACAGGGAAGGAAATT
GACAGTGCTAGATGAGACACGCCGTTGTCAGGCTAGAGCGCGCCCCGTGG
AATGTAGGGCGGTGTTA back to topprotein sequence of rna1909 >rna1909-protein ID=rna1909-protein|Name=rna1909|organism=Nannochloropsis gaditana|type=polypeptide|length=385bp
MVGFTTSTCLVLSLAALSGTRTTAFQPAARPPASSCHSGTPSVSGPCSTN
TRRHPRGWVMAAAATTADAHSTSRTSSPSAAASASSLPAFDLNKYLLDKK
DAVESALDASLQVTSPQVAKITESMRYSLLAGGKRIRPIMCIAACEMAGG
TAEDAMAAAVALEMIHTMSLIHDDLPSMDNDSLRRGKPTNHVIYGEDVAI
LAGDALLSTAFEHVAKHTPSHVPAERVVSVIARLAASVGATGLAGGQVMD
LECEGKEGVGLEELTWIHTHKTAALLKVSVAAGAILGGASAEEVEACETY
ALDIGLAFQVADDILDVTASTEALGKTAGKDLNMDKTTYPKLLGLEGSRE
EARRLVGEAKAALGRFGGRAAPLLAIADYIVERKN back to topmRNA from alignment at CM002458.1:448318..451347+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna1909 ID=rna1909|Name=rna1909|organism=Nannochloropsis gaditana|type=mRNA|length=3030bp|location=Sequence derived from alignment at CM002458.1:448318..451347+ (Nannochloropsis gaditana)
TGGCGCCGGACAGTCTTGCGTCTTTTACGCGTTTCtgtgctccttccccc
ttcgaGTGGCGGAGATCCTCGGACAAGTCAGCTTGAAGCCCGGTCCCGCG
CCAGCCTGAGGGGGCCCTCCACCCTTTTGGGCAATTTTCACGCACGTTTC
CGTATTCAAAGTGCTTATGTACGCTCTTGTATGATGTAGGATAATAATTG
GTGGAGATATCAACTTTTTGAAGACTTACTCCACCactcatcctctttcc
ttcacacGTACGGCAGTGAGTTAGGGGATCCATCGTGAAAACTTATCCAG
ACAccgaagaaaaggaaaatagACAGTAATTATGGTAGGATTCACTACAT
CAACATGCTTGGTGCTATCCTTAGCAGCTCTGAGCGGCACGCGTACCACG
GGTAGGTTGTTGCTTCAAATGTTAGGCATCTAGGCGGACCTCGACTCGAT
CTTCGAGGGACCTGCTCCTCATGCTCTGTGCCTTTGCATCTTGCATGCAC
GGCCCAATCTTTTTTTGTTCTCTCGTTGAGGCATATTTGGATATGCAAGG
CGCTCCGAAGCAATTGATCCAGGGAAAGTGCGGGCAAAACTTGCGGTGCA
ACTCCGCTTTTTCACAATCTTCTCGTCGCTCTTCAGTCTTGCTCAGCCGT
GTGTTTCAATGTTCATCAACCCACAGCTTTCCAGCCGGCGGCAAGACCAC
CTGCCTCTTCTTGTCACTCTGGCACCCCGTCGGTCTCCGGCCCATGCAGC
ACCAACACCAGGCGCCACCCCCGCGGCTGGGTtatggcggcggcagccac
CACCGCAGACGCCCACAGCACCAGccgaacctcctctccctctgccgccg
cctccgccagcagcCTGCCCGCCTTTGATTTGAACAAGTAAGGAGGAGTC
AtggcagggacgaggagggaggtccgGTTTGAGGCCTGTGCGGTGGCTTG
GCTGCCTGTACTACAACACGCTTATCATCGAACTCCAACAAAACTCCCTC
CCCAGGTACCTGCTCGACAAGAAGGACGCAGTGGAAAGCGCGTTGGATGC
CTCGCTCCAAGTGACCTCGCCGCAAGTTGCGAAGATCACCGAGTCCATGC
GCTACTCCCTTCTGGCGGGAGGCAAGCGGATACGGCCGATCATGTGCATC
GCCGCCTGTGAGATGGCTGGCGGGACAGCCGAAGACGCGATGGCAGCAGC
TGTCGCCCTGGAGATGATCCACACGATGAGCCTTATCCACGACGACCTGC
CCTCCATGGACAACGACTCCCTGCGTCGGGGCAAGCCCACGAACCATGTC
ATCTacggcgaggacgtggctaTTCTGGCGGGAGATGCGCTGCTGTCCAC
CGCCTTCGAGCACGTGGCCAAGCACACCCCGTCGCACGTGCCTGCGGAAC
GCGTCGTGAGTGTGATCGCGCGCTTGGCCGCCTCGGTGGGGGCGACGGGG
CTGGCGGGCGGGCAggtgatggatttggagtgcgagggaaaggaaggcgt
ggggCTAGAGGAGCTAACCTGGATCCACACGCACAAGACGGCGGCCCTGC
TGAAGGTGAGCGTGGCAGCGGGGGCGATTCTGGGAGGGGcaagcgcggag
gaggtggaggcgtgCGAGACCTACGCCCTGGACATCGGGCTGGCCTTCCA
GGTGGCGGACGACATCCTGGACGTGACCGCGTCCACGGAGGCGCTGGGCA
AGACGGCGGGGAAGGATCTGAACATGGACAAGACCACCTACCCGAAGCTc
ctggggctggaggggagccgggaggaggcgaggcggctggtgggagaggc
caaggcggcccTGGGCCGGTTCGGAGGTCGGGCCGCGCCGCTTTTGGCGA
TCGCCGACTACAttgtggagaggaagaactaggaagggagggcgggaacg
gGTGTCGCGTGGGGCGGGGCGGCCGCAGGAGGGACCGTGGGCGACTGGGA
GTGACGGAAGAAGCTTGCGGAGCGAGGACCGGGTGGCGGCGACGCATGGG
AGGCGAGAGGCTGCGCGGtgggaacggagggggcCGGCGTCGGGATATTG
GTGAGAAGGTGACACGTGGGTTGCGCCCTgcgaagagaagggaagaagcg
ggaggcagggtatggagggagggcgacgtcGGGGGGCTTGTACAGACCAG
TGTCCTAAACCTCCTATTGAGACGCGAGGGGCGAAGAGGACATACGtacg
gaagaggaaaagaacgGAAGAGATGCCTGCGGGGACTGGCCGAGTGGGTG
TCGTCGGGGGGCATGTCATGCTCTCATGCCAGAAAGAGGACCCCCGAACa
atgagaaagaaggagaagggtgcTTGTTTGCGGTTCGAACATGACTgcgt
ggcggcgggggatggTAAATGCAGGTGGCGTGTCAGAttgaggaaatgga
gggctCGAAATCATGAAAGAAAACGGACGGAGGTGGGGCCACAGAAGTGG
TCCGGGTAACCCCGATGGCGCGTCGTGCGTGTAttcctgcttttccctgc
ttgctcccattccctcctgAGGCTGCCGCAAGGCCGCTGggtcgccttct
cctcacAGCCTCTCTCGATTACCCAAAGCAGCAAGTGCGAAAGGCGATAA
CAACGCACCCCATGCCAACTTATTACGTACAATCACACCCTGCctggcct
gccctcctcactcGCGCTCCTACTCCCACCATCCCTCCTGTGCCTACGGG
TTCAGGAGCTTTCgctccgtttcctccgcctctacCTCGTCCAGTGCGTG
ACTCAAGTACGGTTTCAAAGGGGTTTGCATTTTTTGCAGATCCGCAGGGA
GGTACTTCTTCTTCAGAGAGATCTCGATCGCTCGTTTGATGCGTCGCTCC
CGGGCCACTTGCTCTTCCGGAGACAAATGGTGGATGGCTTTCGTCACTGC
CTGATCCTCTAGGAACAGATCTTGATAGCGTAATCCTGTGTGACGGTAAC
AGGGAAGGAAATTGACAGTGCTAGATGAGACACGCCGTTGTCAGGCTAGA
GCGCGCCCCGTGGAATGTAGGGCGGTGTTA back to topCoding sequence (CDS) from alignment at CM002458.1:448318..451347+ >rna1909 ID=rna1909|Name=rna1909|organism=Nannochloropsis gaditana|type=CDS|length=3474bp|location=Sequence derived from alignment at CM002458.1:448318..451347+ (Nannochloropsis gaditana)
ATGGTAGGATTCACTACATCAACATGCTTGGTGCTATCCTTAGCAGCTCT
GAGCGGCACGCGTACCACGGCTTTCCAGCCGGCGGCAAGACCACCTGCCT
CTTCTTGTCACTCTGGCACCCCGTCGGTCTCCGGCCCATGCAGCACCAAC
ACCAGGCGCCACCCCCGCGGCTGGGTtatggcggcggcagccacCACCGC
AGACGCCCACAGCACCAGccgaacctcctctccctctgccgccgcctccg
ccagcagcCTGCCCGCCTTTGATTTGAACAAGTACCTGCTCGACAAGAAG
GACGCAGTGGAAAGCGCGTTGGATGCCTCGCTCCAAGTGACCTCGCCGCA
AGTTGCGAAGATCACCGAGTCCATGCGCTACTCCCTTCTGGCGGGAGGCA
AGCGGATACGGCCGATCATGTGCATCGCCGCCTGTGAGATGGCTGGCGGG
ACAGCCGAAGACGCGATGGCAGCAGCTGTCGCCCTGGAGATGATCCACAC
GATGAGCCTTATCCACGACGACCTGCCCTCCATGGACAACGACTCCCTGC
GTCGGGGCAAGCCCACGAACCATGTCATCTacggcgaggacgtggctaTT
CTGGCGGGAGATGCGCTGCTGTCCACCGCCTTCGAGCACGTGGCCAAGCA
CACCCCGTCGCACGTGCCTGCGGAACGCGTCGTGAGTGTGATCGCGCGCT
TGGCCGCCTCGGTGGGGGCGACGGGGCTGGCGGGCGGGCAggtgatggat
ttggagtgcgagggaaaggaaggcgtggggCTAGAGGAGCTAACCTGGAT
CCACACGCACAAGACGGCGGCCCTGCTGAAGGTGAGCGTGGCAGCGGGGG
CGATTCTGGGAGGGGcaagcgcggaggaggtggaggcgtgCGAGACCTAC
GCCCTGGACATCGGGCTGGCCTTCCAGGTGGCGGACGACATCCTGGACGT
GACCGCGTCCACGGAGGCGCTGGGCAAGACGGCGGGGAAGGATCTGAACA
TGGACAAGACCACCTACCCGAAGCTcctggggctggaggggagccgggag
gaggcgaggcggctggtgggagaggccaaggcggcccTGGGCCGGTTCGG
AGGTCGGGCCGCGCCGCTTTTGGCGATCGCCGACTACAttgtggagagga
agaactagATGGTAGGATTCACTACATCAACATGCTTGGTGCTATCCTTA
GCAGCTCTGAGCGGCACGCGTACCACGGCTTTCCAGCCGGCGGCAAGACC
ACCTGCCTCTTCTTGTCACTCTGGCACCCCGTCGGTCTCCGGCCCATGCA
GCACCAACACCAGGCGCCACCCCCGCGGCTGGGTtatggcggcggcagcc
acCACCGCAGACGCCCACAGCACCAGccgaacctcctctccctctgccgc
cgcctccgccagcagcCTGCCCGCCTTTGATTTGAACAAGTACCTGCTCG
ACAAGAAGGACGCAGTGGAAAGCGCGTTGGATGCCTCGCTCCAAGTGACC
TCGCCGCAAGTTGCGAAGATCACCGAGTCCATGCGCTACTCCCTTCTGGC
GGGAGGCAAGCGGATACGGCCGATCATGTGCATCGCCGCCTGTGAGATGG
CTGGCGGGACAGCCGAAGACGCGATGGCAGCAGCTGTCGCCCTGGAGATG
ATCCACACGATGAGCCTTATCCACGACGACCTGCCCTCCATGGACAACGA
CTCCCTGCGTCGGGGCAAGCCCACGAACCATGTCATCTacggcgaggacg
tggctaTTCTGGCGGGAGATGCGCTGCTGTCCACCGCCTTCGAGCACGTG
GCCAAGCACACCCCGTCGCACGTGCCTGCGGAACGCGTCGTGAGTGTGAT
CGCGCGCTTGGCCGCCTCGGTGGGGGCGACGGGGCTGGCGGGCGGGCAgg
tgatggatttggagtgcgagggaaaggaaggcgtggggCTAGAGGAGCTA
ACCTGGATCCACACGCACAAGACGGCGGCCCTGCTGAAGGTGAGCGTGGC
AGCGGGGGCGATTCTGGGAGGGGcaagcgcggaggaggtggaggcgtgCG
AGACCTACGCCCTGGACATCGGGCTGGCCTTCCAGGTGGCGGACGACATC
CTGGACGTGACCGCGTCCACGGAGGCGCTGGGCAAGACGGCGGGGAAGGA
TCTGAACATGGACAAGACCACCTACCCGAAGCTcctggggctggagggga
gccgggaggaggcgaggcggctggtgggagaggccaaggcggcccTGGGC
CGGTTCGGAGGTCGGGCCGCGCCGCTTTTGGCGATCGCCGACTACAttgt
ggagaggaagaactagATGGTAGGATTCACTACATCAACATGCTTGGTGC
TATCCTTAGCAGCTCTGAGCGGCACGCGTACCACGGCTTTCCAGCCGGCG
GCAAGACCACCTGCCTCTTCTTGTCACTCTGGCACCCCGTCGGTCTCCGG
CCCATGCAGCACCAACACCAGGCGCCACCCCCGCGGCTGGGTtatggcgg
cggcagccacCACCGCAGACGCCCACAGCACCAGccgaacctcctctccc
tctgccgccgcctccgccagcagcCTGCCCGCCTTTGATTTGAACAAGTA
CCTGCTCGACAAGAAGGACGCAGTGGAAAGCGCGTTGGATGCCTCGCTCC
AAGTGACCTCGCCGCAAGTTGCGAAGATCACCGAGTCCATGCGCTACTCC
CTTCTGGCGGGAGGCAAGCGGATACGGCCGATCATGTGCATCGCCGCCTG
TGAGATGGCTGGCGGGACAGCCGAAGACGCGATGGCAGCAGCTGTCGCCC
TGGAGATGATCCACACGATGAGCCTTATCCACGACGACCTGCCCTCCATG
GACAACGACTCCCTGCGTCGGGGCAAGCCCACGAACCATGTCATCTacgg
cgaggacgtggctaTTCTGGCGGGAGATGCGCTGCTGTCCACCGCCTTCG
AGCACGTGGCCAAGCACACCCCGTCGCACGTGCCTGCGGAACGCGTCGTG
AGTGTGATCGCGCGCTTGGCCGCCTCGGTGGGGGCGACGGGGCTGGCGGG
CGGGCAggtgatggatttggagtgcgagggaaaggaaggcgtggggCTAG
AGGAGCTAACCTGGATCCACACGCACAAGACGGCGGCCCTGCTGAAGGTG
AGCGTGGCAGCGGGGGCGATTCTGGGAGGGGcaagcgcggaggaggtgga
ggcgtgCGAGACCTACGCCCTGGACATCGGGCTGGCCTTCCAGGTGGCGG
ACGACATCCTGGACGTGACCGCGTCCACGGAGGCGCTGGGCAAGACGGCG
GGGAAGGATCTGAACATGGACAAGACCACCTACCCGAAGCTcctggggct
ggaggggagccgggaggaggcgaggcggctggtgggagaggccaaggcgg
cccTGGGCCGGTTCGGAGGTCGGGCCGCGCCGCTTTTGGCGATCGCCGAC
TACAttgtggagaggaagaactag back to top
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