rna1907, rna1907 (mRNA) Nannochloropsis gaditana

Overview
Namerna1907
Unique Namerna1907
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2327
Alignment locationCM002458.1:446634..448309 -

Link to JBrowse

Properties
Property NameValue
Productsulfate permease family
Orig transcript idgnl|cribi|Naga_100002g114.4822.mrna
Orig protein idgnl|cribi|Naga_100002g114.4822
GeneSNR18
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:446634..448309 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
SNR18gene1821Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28703.1cds1902Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1907rna1907-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1907 ID=rna1907|Name=rna1907|organism=Nannochloropsis gaditana|type=mRNA|length=2327bp
CTTAAATCCTGTCTTTCGTCCTGGTCTTTACTTCATTTGCATCTATATTT
CAGTTGTATGCAGACAATCATCATCACAGTTGTGGCAGCCTCGGCACGTA
TCCGATCCACATCGATCCCCCCTCTCCTCCCTCCTTCCAGTCATGGTCTG
CGAGAATGAAAGCCAGCCATTGGCACTTTCAGAAACCTACGTCCGGCGGC
GTCGTGGCAGCAGTATCACAGGTCGACGAGCCATAGTCGTGGTCGATCCC
CTGTCAAGTGGTGCGCTGTTGGCTCAGATGGCGCGCGACAGGGGTTACGC
CGTCATTCGTGTCCTCTCCACCACCTTCTCTGAAGATGTACTGGCGCTGC
TACCCGCCGCCTGCAAAGACCTCCAGTTCGCCGCATCCATCCAACATGCG
GGCGACATCGAGGCAACCCTGGCCTCCATCCGTTCGCTGGGGGGAGGCCC
GCACAACGGAATTTTCGAAATCGTCGGGCTGACCTGCGGGTGCGAAAGCG
GGGTCGAGCTGGCCGATGCTCTTTCCGCCAGATACGGGGAGGGGATGAAG
AGCAACGGTGAAGCGCTCTCTCACCACCGCCGCGACAAGTTCTTGATGGG
CGAGCGGGTGAGAGGCGCAGGGTTGCGGGCGGCGCGGCAGGTGGAGACGG
CGGAGTGGGAGGGCCAGGAGACAAGGGAGATTTCCAAATGGTGTTGAAGC
CGGTCCGGTCAGCCGGCACCGAGAACGTTTTCTTCGTGTCCTCCTTGACG
GAGGCTCGGAGGGCCTTCAAGGCCATTCTGGGGGAGGCAAACTTGTTTGG
AGAGAGAAACGACAAGGTCTTGGCCCAGGAATTCTTGCAGGGACAAGAGT
ATGTGGTGGACTGCGTCTCCAAGGGCGGCATTCATAAATGCGTGGCGATA
TGGGCCTATGACAAGGCTCCCTGTAACGGCAGCAAGTTCGTCTACTTCGG
AGTCAACCTCTTCGAGTCCGGAGACGGGGCTCGGGAGGAGCGGATGACCG
ACTACATATTCGGCGTTCTGGACGCTCTGGGGATCAGGGAGGGGCCCACG
CACTCGGAGGTGATATGGCTGGAAGGGGAGGACCAGCCCTGTCTGATTGA
GGTTGGCGCGCGGCCGCACGGCGGGGAGGGGACTTTCACGGAGCTCTCCA
CGCCCTGCGTCTCCTACAACCAGCTCTCCGTCACCCTGGACGCCATCGAG
GACAACGGGAAGTTCGAGGCCTTGCCCAGACGCCCGGGTCGGCTCAAGGC
CCACGCGCGAGAGGCGACGCTGGTATCGCGCCAGGCGGGGGTCCTGCTCG
CCTATCCCATGCTGGACGAGGTGCGGGCATTGCGCTCTTACAAGAGCATG
GAGATGAAGGTGGTGCCGGGGCAAGACATTCCCCTGACCGTAGACTTCCT
GTCGACGCCGGGAAGCGTGATGCTCGTGCACGCGGACTGGGAGGTGGTGG
TGAGGGACTACGAGCAGATCCACGCCTGGGAGGCAGACGGCAGCTTTTAC
GAGGTGGTTGAGGACGGGGTGGAGGGAGACGAGGAGGGGCGTGAGGAGAA
GGGGGGAGAGAAAGCGAAAGGGGGCGAGATGAAAGCGGCGAAGAAGGAGG
ACAAGCGTGCGAGTGGAGCGGAGTAGGAGCCGTGGGACGCGTGCAGGCAG
TCTCTTTCCAACGAGGTATCCCGTCTGGCGTTGTGGGGAGCCCCTGTACG
CTGACCTCCTTTCATTGTTGCGAATTCCGACACCTGTGGGTTTCTGATAC
GAATTGGAGAATGTCTATGGGCGGAGTGCGCCGGCGTCTCAGCTGTGCTT
CCCTTCACGTATCAACAAAAAGTGTGAATTGAGGAAGACCCGGGCTGAGA
GTAAGTCTTTTGCGGAAGCTGATTGTAAGTGTTCTGTAGAAGAAGAAGAC
CTATTGAAGTCTCCCACGTATTTGTTTCTTTCTATGGGCCTACTGGACAC
ACGTCCGACGGTGAGCGCGTCATCAAGCTGGCCTTGGAAAGCACAAAATA
CCGAATACAGACGAACAAGCGGGGTCCGCAAGTAGTTTGCTTCTTTTTGT
GCTCCCTTCTGGAGCCCGCTTACCCTGCAGGATGGGGGTGAGTAGGAGTG
TACATCAAAAGGGTATCCAGGAGGTCGTTATGTACAAGAGGGGAGGTGCA
CGCTCGCCCCGGATTTTTGTCCCCCAGCCACGCCCGAGAATCCCGCCAGC
CAGGCTGCCTTTTCCTTCCTTCAAGGACCAATGTACAAAGTGCATATACA
TGTCCGCCGGCTCCGCCTCTCAGGAGAGACTGCAGCCGGCCTGGTATTTG
GCTGCTTTCGCCACCTGCTCCAAGCCC
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protein sequence of rna1907

>rna1907-protein ID=rna1907-protein|Name=rna1907|organism=Nannochloropsis gaditana|type=polypeptide|length=295bp
MSFQDVASHSHSYENGAMNGGVRYGNGGALTSKPVVTFGESNGRSIYASG
SRSATNGSTDHTPGSSVPPLRHALLQYQQQVQLFEKLSRVLGGPRDDSEL
RSQLQAQGSVVKEVGSRVEQLVHAQLRSVEGVRSKAEKDKARLEVQKMSK
DAQRLKLRFENLERATAVRLRELKLAGRRAEDLLRGSGMGNGDEPGAGGG
GQLMERQHGQQEMQLLQAEDLDERLLQEREEEIVAINQSVVKVNEIFRDL
GELVSRQQEDIDAIEQNVQHSHAAAKSGLEQVAKAAKYQAGCSLS
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mRNA from alignment at CM002458.1:446634..448309-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1907 ID=rna1907|Name=rna1907|organism=Nannochloropsis gaditana|type=mRNA|length=1676bp|location=Sequence derived from alignment at CM002458.1:446634..448309- (Nannochloropsis gaditana)
GACGAAGCGCAGCATGTCACGCTCTCTTCTCATCCATTCTGACGCAGCAA
AGCCTTAAGGCACCCAAAGGAGGGCCAATATGACGGCAAAGACATGACCC
CGGGGCAGCAAAAGGCGAGCCCTCCCCAGACCCCCCCGTCATGATGCTGC
CGCGTTCTGCCTGCCTGTCACGGCGAACAAACTCGAGGCGCCATGGTGGC
ATTTCACCTTCCTGCCAACTCGTTCTATGTTATTGCTGGATTTGGGTGCG
CCTCAACTGTTTCTGGCAAATTTACGTAGGCACTTTTTCCGTCTAGGTAC
AGGCTGTTCCACTGTGGCCTCTGGCTTCGCCTCTCTGCTCCATCCCGCCC
GCTCTCAACAGACTTTGAAGTTCTTGCACCCATGTCATTTCAAGATGTAG
CGAGCCACAGTCACTCTTACGAGAACGGGGCCATGAACGGTGGAGTCAGG
TACGGCAACGGAGGAGCTTTGACATCTAAACCTGTGGTGACGTTTGGGGA
GAGCAACGGGAGGAGCATCTATGCGAGCGGGAGCCGAAGCGCGACAAACG
GCAGCACGGATCACACTCCTGGAAGCTCTGTCCCGCCATTGCGCCATGCT
CTCCTCCAATACCAGCAGCAAGTGCAGCTGTTCGAAAAGCTTTCGCGCGT
CCTGGGCGGGCCCCGTGACGACAGCGAGCTGAGAAGCCAGCTGCAGGCGC
AGGGCTCCGTGGTGAAGGAGGTGGGAAGCCGCGTCGAGCAACTGGTACAT
GCACAGTTGCGGTCGGTGGAGGGCGTGCGGAGCAAAGCAGAGAAGGACAA
GGCTCGTTTGGAGGTGCAGAAAATGAGCAAGGACGCTCAGCGGTTGAAAC
TCCGGTTCGAGAACCTGGAGCGGGCCACGGCGGTAAGACTACGGGAGCTC
AAGTTGGCTGGCCGGCGAGCCGAGGATTTGTTGAGAGGGTCGGGCATGGG
AAATGGAGATGAGCCAGGCGCGGGAGGGGGGGGGCAGCTGATGGAGCGGC
AGCACGGGCAGCAGGAAATGCAGCTCTTGCAGGCGGAAGACCTGGACGAG
CGCCTGCTCCAAGAGCGCGAGGAGGAGATTGTGGCCATCAACCAGTCCGT
CGTGAAAGTGAACGAGATTTTCCGCGACCTGGGCGAGCTGGTGTCGCGGC
AGCAGGAGGACATCGACGCCATCGAGCAAAACGTGCAGCACTCCCACGCC
GCCGCCAAGTCGGGCTTGGAGCAGGTGGCGAAAGCAGCCAAATACCAGGC
CGGCTGCAGTCTCTCCTGAGAGGCGGAGCCGGCGGACATGTATATGCACT
TTGTACATTGGTCCTTGAAGGAAGGAAAAGGCAGCCTGGCTGGCGGGATT
CTCGGGCGTGGCTGGGGGACAAAAATCCGGGGCGAGCGTGCACCTCCCCT
CTTGTACATAACGACCTCCTGGATACCCTTTTGATGTACACTCCTACTCA
CCCCCATCCTGCAGGGTAAGCGGGCTCCAGAAGGGAGCACAAAAAGAAGC
AAACTACTTGCGGACCCCGCTTGTTCGTCTGTATTCGGTATTTTGTGCTT
TCCAAGGCCAGCTTGATGACGCGCTCACCGTCGGACGTGTGTCCAGTAGG
CCCATAGAAAGAAACAAATACGTGGGAGACTTCAATAGGTCTTCTTCTTC
TACAGAACACTTACAATCAGCTTCCG
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Coding sequence (CDS) from alignment at CM002458.1:446634..448309-

>rna1907 ID=rna1907|Name=rna1907|organism=Nannochloropsis gaditana|type=CDS|length=888bp|location=Sequence derived from alignment at CM002458.1:446634..448309- (Nannochloropsis gaditana)
ATGTCATTTCAAGATGTAGCGAGCCACAGTCACTCTTACGAGAACGGGGC
CATGAACGGTGGAGTCAGGTACGGCAACGGAGGAGCTTTGACATCTAAAC
CTGTGGTGACGTTTGGGGAGAGCAACGGGAGGAGCATCTATGCGAGCGGG
AGCCGAAGCGCGACAAACGGCAGCACGGATCACACTCCTGGAAGCTCTGT
CCCGCCATTGCGCCATGCTCTCCTCCAATACCAGCAGCAAGTGCAGCTGT
TCGAAAAGCTTTCGCGCGTCCTGGGCGGGCCCCGTGACGACAGCGAGCTG
AGAAGCCAGCTGCAGGCGCAGGGCTCCGTGGTGAAGGAGGTGGGAAGCCG
CGTCGAGCAACTGGTACATGCACAGTTGCGGTCGGTGGAGGGCGTGCGGA
GCAAAGCAGAGAAGGACAAGGCTCGTTTGGAGGTGCAGAAAATGAGCAAG
GACGCTCAGCGGTTGAAACTCCGGTTCGAGAACCTGGAGCGGGCCACGGC
GGTAAGACTACGGGAGCTCAAGTTGGCTGGCCGGCGAGCCGAGGATTTGT
TGAGAGGGTCGGGCATGGGAAATGGAGATGAGCCAGGCGCGGGAGGGGGG
GGGCAGCTGATGGAGCGGCAGCACGGGCAGCAGGAAATGCAGCTCTTGCA
GGCGGAAGACCTGGACGAGCGCCTGCTCCAAGAGCGCGAGGAGGAGATTG
TGGCCATCAACCAGTCCGTCGTGAAAGTGAACGAGATTTTCCGCGACCTG
GGCGAGCTGGTGTCGCGGCAGCAGGAGGACATCGACGCCATCGAGCAAAA
CGTGCAGCACTCCCACGCCGCCGCCAAGTCGGGCTTGGAGCAGGTGGCGA
AAGCAGCCAAATACCAGGCCGGCTGCAGTCTCTCCTGA
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Synonyms
Publications