EWM28703.1, cds1902 (CDS) Nannochloropsis gaditana

Overview
NameEWM28703.1
Unique Namecds1902
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:447041..447928 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28703.1
Productsulfate permease family
Orig transcript idgnl|cribi|Naga_100002g114.4822.mrna
GeneSNR18
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:447041..447928 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
GO:0016192vesicle-mediated transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR010989t-SNARE
IPR000727T_SNARE_dom
Homology
BLAST of EWM28703.1 vs. NCBI_GenBank
Match: gi|585111126|gb|EWM28703.1| (sulfate permease family [Nannochloropsis gaditana])

HSP 1 Score: 591.652 bits (1524), Expect = 0.000e+0
Identity = 295/295 (100.00%), Postives = 295/295 (100.00%), Query Frame = 0
Query:    1 MSFQDVASHSHSYENGAMNGGVRYGNGGALTSKPVVTFGESNGRSIYASGSRSATNGSTDHTPGSSVPPLRHALLQYQQQVQLFEKLSRVLGGPRDDSELRSQLQAQGSVVKEVGSRVEQLVHAQLRSVEGVRSKAEKDKARLEVQKMSKDAQRLKLRFENLERATAVRLRELKLAGRRAEDLLRGSGMGNGDEPGAGGGGQLMERQHGQQEMQLLQAEDLDERLLQEREEEIVAINQSVVKVNEIFRDLGELVSRQQEDIDAIEQNVQHSHAAAKSGLEQVAKAAKYQAGCSLS 295
            MSFQDVASHSHSYENGAMNGGVRYGNGGALTSKPVVTFGESNGRSIYASGSRSATNGSTDHTPGSSVPPLRHALLQYQQQVQLFEKLSRVLGGPRDDSELRSQLQAQGSVVKEVGSRVEQLVHAQLRSVEGVRSKAEKDKARLEVQKMSKDAQRLKLRFENLERATAVRLRELKLAGRRAEDLLRGSGMGNGDEPGAGGGGQLMERQHGQQEMQLLQAEDLDERLLQEREEEIVAINQSVVKVNEIFRDLGELVSRQQEDIDAIEQNVQHSHAAAKSGLEQVAKAAKYQAGCSLS
Sbjct:    1 MSFQDVASHSHSYENGAMNGGVRYGNGGALTSKPVVTFGESNGRSIYASGSRSATNGSTDHTPGSSVPPLRHALLQYQQQVQLFEKLSRVLGGPRDDSELRSQLQAQGSVVKEVGSRVEQLVHAQLRSVEGVRSKAEKDKARLEVQKMSKDAQRLKLRFENLERATAVRLRELKLAGRRAEDLLRGSGMGNGDEPGAGGGGQLMERQHGQQEMQLLQAEDLDERLLQEREEEIVAINQSVVKVNEIFRDLGELVSRQQEDIDAIEQNVQHSHAAAKSGLEQVAKAAKYQAGCSLS 295          
BLAST of EWM28703.1 vs. NCBI_GenBank
Match: gi|298708209|emb|CBJ30548.1| (Soluble NSF Attachment Protein (SNAP) Receptor (SNARE) [Ectocarpus siliculosus])

HSP 1 Score: 94.3597 bits (233), Expect = 1.916e-19
Identity = 76/229 (33.19%), Postives = 119/229 (51.97%), Query Frame = 0
Query:   77 YQQQVQLFEKLSRVLGGPRDDSELRSQLQAQGSVVKEVGSRVEQLVHAQLRSVEGVRSKAEKDKARLEVQ--KMSKDAQRLKLRFENLERATAVRLRELKLAGRRAEDLLRGSGMGNGDEPG--------AGGGGQLMERQHGQQEMQLLQAEDLDERLLQEREEEIVAINQSVVKVNEIFRDLGELVSRQQEDIDAIEQNVQHSHAAAKSGLEQVAKAAKYQAGCSLS 295
            Y Q V L  ++ + LG  RD  ELR Q + Q  V+ E+  +++  +  Q +  EG    + +D ARL     K++KD  R+     +L      R+RE+        D  R S +   +E           G    +M+ Q  ++ +Q+ Q E ++  ++QE EEE+  IN+S+ KVNEI+RDL  +V +QQE ++ IE N + +HA A+ GL QV KA  YQ  C +S
Sbjct:    3 YSQNVTLLHRMVQQLGTARDTGELRGQCRCQLQVIGELREKIQAQMRLQQQQAEGA---SRQDAARLSAMNSKLTKDFNRVNAIALDLGTQAERRMREV--------DAQRQSQVEEDEERARVAFAGAGGGQPQGMMQVQQRRERVQM-QEEAINTAIIQETEEELQQINKSLYKVNEIYRDLANIVEQQQEAVEEIETNTEGAHARAQEGLVQVQKANDYQPSCVVS 219          
BLAST of EWM28703.1 vs. NCBI_GenBank
Match: gi|1021056126|emb|SAM08186.1| (hypothetical protein [Absidia glauca])

HSP 1 Score: 84.3445 bits (207), Expect = 3.667e-15
Identity = 58/207 (28.02%), Postives = 104/207 (50.24%), Query Frame = 0
Query:   84 FEKLSRVLGGPRDDSELRSQLQAQGSVVKEVGSRVEQLVHAQLRSVEGVRSKAEKDKARLEVQKMSKDAQRLKLRFENLERATAVRLRELKLAGRRAEDLLRGSGMGNGDEPGAGGGGQLMERQHGQQEMQLLQAE-DLDERLLQEREEEIVAINQSVVKVNEIFRDLGELVSRQQEDIDAIEQNVQHSHAAAKSGLEQVAKAAKYQ 289
             E+L   LGGPRD +++R++L        +V      L+      ++G+       + +LE QK+SKD Q++   F+ ++R +  + RE     +    +L+       DE G       ++    + ++Q L  E + +E L+ ERE+EI+ I Q + ++NEIFRDLG LV+ Q   I +I  NV +     +   +++  A ++Q
Sbjct:   83 LERLVNFLGGPRDTADVRTKLH-------DVTEDTRNLIKDATNDIKGLTRANPSRQRKLEQQKLSKDFQKVLGDFQKIQRVSVSKQREYLDKAKATTAMLQSQAAEEEDEGGLDDDTTYIDDTQRRIQLQTLDNEIEYNEGLITEREDEIMGIEQGITELNEIFRDLGTLVNEQDSGIQSIYGNVLNVSQNTRQAADELTTANRHQ 282          
BLAST of EWM28703.1 vs. NCBI_GenBank
Match: gi|1139837121|ref|XP_011454495.2| (PREDICTED: syntaxin-7-like isoform X2 [Crassostrea gigas])

HSP 1 Score: 83.5741 bits (205), Expect = 4.640e-15
Identity = 62/208 (29.81%), Postives = 111/208 (53.37%), Query Frame = 0
Query:   84 FEKLSRVLGGPRDDSELRSQLQAQGSVVKEVGSRVEQLVHAQLRSVEGVRSKAEKDKA-RLEVQKMSKDAQRLKLRFENLERATAVRLRE-LKLAGRRAEDLLRGSGMGNGDEPGAGGGGQLMERQHGQQEMQLLQAEDLDERLLQEREEEIVAINQSVVKVNEIFRDLGELVSRQQEDIDAIEQNVQHSHAAAKSGLEQVAKAAKYQ 289
             EKL +++G  RD  E R ++        EV ++  ++V    R ++ + S    D+  + +V ++  D Q    RF +L++  A ++++  KL+ +  +    G  M + D+          ER+  +Q++Q    ED D  L+++REE I  +   ++ VNEIF+DL  +V+ Q E ID+IE NV  ++   ++G  Q+AKAA+YQ
Sbjct:   51 LEKLMKMIGTERDSVESRDKIH-------EVSTKTNKIVQETSRQMKTISSMTGLDRQQKFQVDRLKNDFQEAVQRFTSLQKRAAEQVKKTFKLSSQTPKPKSSGGWMDDDDDEVKFLE---QERKREEQQIQDQIIED-DLTLIRDREERIRQLESDILDVNEIFKDLATMVNEQGETIDSIEGNVDKAYTNVETGTSQLAKAAEYQ 247          
BLAST of EWM28703.1 vs. NCBI_GenBank
Match: gi|1139837119|ref|XP_011454494.2| (PREDICTED: syntaxin-7-like isoform X1 [Crassostrea gigas])

HSP 1 Score: 83.5741 bits (205), Expect = 5.887e-15
Identity = 62/208 (29.81%), Postives = 111/208 (53.37%), Query Frame = 0
Query:   84 FEKLSRVLGGPRDDSELRSQLQAQGSVVKEVGSRVEQLVHAQLRSVEGVRSKAEKDKA-RLEVQKMSKDAQRLKLRFENLERATAVRLRE-LKLAGRRAEDLLRGSGMGNGDEPGAGGGGQLMERQHGQQEMQLLQAEDLDERLLQEREEEIVAINQSVVKVNEIFRDLGELVSRQQEDIDAIEQNVQHSHAAAKSGLEQVAKAAKYQ 289
             EKL +++G  RD  E R ++        EV ++  ++V    R ++ + S    D+  + +V ++  D Q    RF +L++  A ++++  KL+ +  +    G  M + D+          ER+  +Q++Q    ED D  L+++REE I  +   ++ VNEIF+DL  +V+ Q E ID+IE NV  ++   ++G  Q+AKAA+YQ
Sbjct:   64 LEKLMKMIGTERDSVESRDKIH-------EVSTKTNKIVQETSRQMKTISSMTGLDRQQKFQVDRLKNDFQEAVQRFTSLQKRAAEQVKKTFKLSSQTPKPKSSGGWMDDDDDEVKFLE---QERKREEQQIQDQIIED-DLTLIRDREERIRQLESDILDVNEIFKDLATMVNEQGETIDSIEGNVDKAYTNVETGTSQLAKAAEYQ 260          
BLAST of EWM28703.1 vs. NCBI_GenBank
Match: gi|565400940|ref|XP_006365975.1| (PREDICTED: syntaxin-22-like [Solanum tuberosum])

HSP 1 Score: 82.8037 bits (203), Expect = 8.095e-15
Identity = 83/258 (32.17%), Postives = 124/258 (48.06%), Query Frame = 0
Query:   42 NGRSIYASGSRSATNGSTDHTPGSSVPPLRHALLQYQQQVQLFEKLSRVLGGPRDDSELRSQLQAQ----GSVVKEVGSRVEQLVHAQLRSVEGVRSKAEKDKARLEVQKMSKDAQRLKLRFENLERATAVRLRELKLAGRRAEDLLRGSGMGNGDEPGAGGGGQ-----LMERQHGQQEMQLLQAE-DLDERLLQEREEEIVAINQSVVKVNEIFRDLGELVSRQQEDIDAIEQNVQHSHAAAKSGLEQVAKAAKYQ 289
            +GRS+     R   NG  D T       +   + Q    V  F++L   LG P+D  ELR +L       G +VK+  ++++Q      R VE   SK   D       K++KD Q +   F+  +R  A R  E        + +L  S   +G+   +   GQ     L+E +  +QE+ LL  E   +E +++ERE+ I  + Q + +VNEIF+DL  LV  Q   ID I  N+++SHAA   G  Q+AKAAK Q
Sbjct:    8 SGRSV--GPRRGFVNGKQDTTQA-----VASGIFQINTAVSTFQRLVNTLGTPKDTPELREKLHKTRLHIGQLVKDTSTKLKQASETDHR-VEVSASKKITDA------KLAKDFQAVLKEFQKAQRLAAER--ETAYTPFVPQAVL-PSSYTDGEVDVSSDKGQEQRALLVESR--RQEVLLLDNEISFNEAIIEEREQGIQEVQQQIGEVNEIFKDLAVLVHEQGTMIDDIGSNIENSHAATAQGRSQLAKAAKTQ 246          
BLAST of EWM28703.1 vs. NCBI_GenBank
Match: gi|1149592228|gb|OON01532.1| (hypothetical protein BSLG_07803 [Batrachochytrium salamandrivorans])

HSP 1 Score: 83.1889 bits (204), Expect = 8.459e-15
Identity = 64/222 (28.83%), Postives = 105/222 (47.30%), Query Frame = 0
Query:   72 HALLQYQQQVQLFEKLSRVLGGPRDDSELRSQLQAQGSVVKEVGSRVEQLVHA---QLRSVEGVRSKAEKDKARLEVQKMSKDAQRLKLRFENLERATAVRLRELKLAGRRAEDLLRGSGMGNGDEPGAGGGGQLMERQHGQQEMQLLQAEDLDERLLQEREEEIVAINQSVVKVNEIFRDLGELVSRQQEDIDAIEQNVQHSHAAAKSGLEQVAKAAKYQA 290
            +++ Q    V   ++L  + G  RD  E+R QL        +V  R  QL+     +L+ +  VR      + R+  +K+ KD + +  RF+   +  A + R+     R  +        G  DEP  G   QL + +   +E++       +E L+ ERE ++V I +S+ +VNEIFRDLG LV+ QQ  +D IE NV       +    ++  A+ YQA
Sbjct:   61 NSIFQVSSNVATIQRLLNLFGSHRDTPEMRWQLH-------DVTERTRQLIKTTSLELKKIMAVRPSDGDRQIRITQKKLQKDFEEVLRRFQEASKIAAEKSRDYVTMARAQKMQTVVDEEGTEDEPLLGHSQQLSQLRALDEEVEF------NEALITEREHDLVGIERSIQEVNEIFRDLGTLVNEQQYLLDNIETNVGAVAVNVEGAHTELRTASAYQA 269          
BLAST of EWM28703.1 vs. NCBI_GenBank
Match: gi|676495433|ref|XP_009066890.1| (hypothetical protein LOTGIDRAFT_237001 [Lottia gigantea] >gi|556093730|gb|ESO82383.1| hypothetical protein LOTGIDRAFT_237001 [Lottia gigantea])

HSP 1 Score: 82.8037 bits (203), Expect = 8.581e-15
Identity = 62/210 (29.52%), Postives = 105/210 (50.00%), Query Frame = 0
Query:   84 FEKLSRVLGGPRDDSELRSQLQAQGSVVKEVGSRVEQLVHAQLRSVEGVRSKAEKDKARLEVQKMSKDAQRLKLRFENLERATAVRLRE-LKLAGRRAEDLLRGSGMGNGDEPGAGGGGQLM---ERQHGQQEMQLLQAEDLDERLLQEREEEIVAINQSVVKVNEIFRDLGELVSRQQEDIDAIEQNVQHSHAAAKSGLEQVAKAAKYQ 289
             +K  + +G  RD  +LR +       + E    + +LV   +R ++ V +K    + ++++ K+  D Q    RF+ L++    +++  +KL  R+A   +     G  D        Q     ER+   QE Q +  +DL   L++EREE I  +   ++ VNEIFRDLG LVS Q E +D IE NV+ ++   +    Q+++AA YQ
Sbjct:   54 IDKAMKSIGTDRDSVQLRDK-------IHETSQNISKLVQDSMRQLKVVGNKPADKQQKIQLSKLRNDFQESVERFQGLQKMATEKVKSSVKLGSRKATPQVDSGMTGWNDPDDFSDKTQFYHQEERRAELQEQQQVVEDDL--ALIREREERIRQLESDILDVNEIFRDLGALVSEQGETLDTIEANVERTYGNVEQANSQLSQAAVYQ 254          
BLAST of EWM28703.1 vs. NCBI_GenBank
Match: gi|1104626176|ref|XP_019070058.1| (PREDICTED: syntaxin-22 isoform X2 [Solanum lycopersicum])

HSP 1 Score: 82.4185 bits (202), Expect = 9.664e-15
Identity = 84/262 (32.06%), Postives = 125/262 (47.71%), Query Frame = 0
Query:   42 NGRSIYASGSRSATNGSTDHTPGSSVPPLRHALLQYQQQVQLFEKLSRVLGGPRDDSELRSQLQAQ----GSVVKEVGSRVEQLVHAQLRSVEGVRSKAEKDKARLEVQKMSKDAQRLKLRFENLERATAVRLRELKLAGRRAEDLLRGSGMGNGDEPGAGGGGQ-----LMERQHGQQEMQLLQAE-DLDERLLQEREEEIVAINQSVVKVNEIFRDLGELVSRQQEDIDAIEQNVQHSHAAAKSGLEQVAKAAKYQAGCS 293
            +GRS+     R   NG  D T       +   + Q    V  F++L   LG P+D  ELR +L       G +VK+  ++++Q      R VE   SK   D       K++KD Q +   F+  +R  A R  E        + +L  S   +G+   +   GQ     L+E +  +QE+ LL  E   +E +++ERE+ I  + Q + +VNEIF+DL  LV  Q   ID I  N+++SHAA   G  Q+AKAAK Q   S
Sbjct:    8 SGRSV--GPRRGFMNGKQDTTQA-----VASGIFQINTAVSTFQRLVNTLGTPKDTPELRDKLHKTRLHIGQLVKDTSTKLKQASETDHR-VEVSASKKITDA------KLAKDFQAVLKEFQKAQRLAAER--ETAYTPFIPQAVL-PSSYTDGEVDVSSDKGQEQRALLVESR--RQEVLLLDNEISFNEAIIEEREQGIQEVQQQIGEVNEIFKDLAVLVHEQGTMIDDIGSNIENSHAATAQGRSQLAKAAKTQRSNS 250          
BLAST of EWM28703.1 vs. NCBI_GenBank
Match: gi|224014130|ref|XP_002296728.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220968583|gb|EED86929.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 83.9593 bits (206), Expect = 1.044e-14
Identity = 68/221 (30.77%), Postives = 126/221 (57.01%), Query Frame = 0
Query:   78 QQQVQLFEKLSRVLGGPRDDSELRSQLQAQGSVVKEVGSRVEQLVHAQLRSVEGVRSKAEKDKARLEVQKMSKDAQRLKLRFENLERATAVR--LRELKLAGRRAEDLLRGSGMGNGDEPGAGGGGQLMERQHGQQEMQLLQAEDLDERLLQEREEEIVAINQSVVKVNEIFRDLGELVSRQQEDIDAIEQNVQHSHAAAKSGLEQVAKAAKY-QAGCSLS 295
            Q+ V L EK++R +G   D+S L++Q   Q  V++++G+R+E+ + +Q  S      + E  ++R    K+S+D + ++ +F+N++     +  L E +    R E+  +     NG   G+ G  ++M RQ     MQ+ Q + ++E +++ERE EI  I++ + +VNEI++DL  LV  QQE +D IE  ++++     SGL+ + KA +  Q+ C +S
Sbjct:  202 QRNVALLEKMARSVGTKNDNSVLQTQYNLQLDVIRQLGTRIEKQLQSQ-ESRLSTLPRTEAAQSRTTHVKLSRDYRLVEQQFKNVQLDVKKKRSLAEARQREIRIEEEEKERRRVNGGGEGSAGD-EVMRRQ-----MQI-QEDRINEEIMREREAEIRNIHKGMHQVNEIYKDLAHLVDNQQEGVDQIETQMENTKENTASGLKHIEKANESQQSQCVVS 414          
The following BLAST results are available for this feature:
BLAST of EWM28703.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111126|gb|EWM28703.1|0.000e+0100.00sulfate permease family [Nannochloropsis gaditana][more]
gi|298708209|emb|CBJ30548.1|1.916e-1933.19Soluble NSF Attachment Protein (SNAP) Receptor (SN... [more]
gi|1021056126|emb|SAM08186.1|3.667e-1528.02hypothetical protein [Absidia glauca][more]
gi|1139837121|ref|XP_011454495.2|4.640e-1529.81PREDICTED: syntaxin-7-like isoform X2 [Crassostrea... [more]
gi|1139837119|ref|XP_011454494.2|5.887e-1529.81PREDICTED: syntaxin-7-like isoform X1 [Crassostrea... [more]
gi|565400940|ref|XP_006365975.1|8.095e-1532.17PREDICTED: syntaxin-22-like [Solanum tuberosum][more]
gi|1149592228|gb|OON01532.1|8.459e-1528.83hypothetical protein BSLG_07803 [Batrachochytrium ... [more]
gi|676495433|ref|XP_009066890.1|8.581e-1529.52hypothetical protein LOTGIDRAFT_237001 [Lottia gig... [more]
gi|1104626176|ref|XP_019070058.1|9.664e-1532.06PREDICTED: syntaxin-22 isoform X2 [Solanum lycoper... [more]
gi|224014130|ref|XP_002296728.1|1.044e-1430.77predicted protein [Thalassiosira pseudonana CCMP13... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1907rna1907Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications