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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100002g116.4823.mrna |
| Orig protein id | gnl|cribi|Naga_100002g116.4823 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002458.1 | supercontig | CM002458.1:442547..443390 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna1904 ID=rna1904|Name=rna1904|organism=Nannochloropsis gaditana|type=mRNA|length=7352bp
GCTATGTCCTGTGCTCTCGTGTAACTTGCCTTACCTCCTCGTACCCGTCC
CCATCGGAAAAAGAAGAAAAGCCGCAAGCGTGTTCTTTTCTAGTCTTTGC
ACGTGCACGATGTCTCTTTCACATAAAATAATCGATGGCTACACAACCGG
ATCATTGTACCACAGGGCCAGGGTGTGTATACCCGCTTGAACGGAAGAGC
GGTCATCATTACGGTTTCAGTATCTTTTCGCTTGGTCAGGGCCTTGAGAT
CTTCAAGTGGGGTGGCCCACACATCTGGACCGCAGGCACAGGAAAAATTA
AAATGCCGCCGCAAACGTGGAATATTGGGCCACGCCCACAGCTCATACAT
GCTACAGAGAAAAGGCTACGGCCCATAGTCGGCGGATTGGTCTTCTCACG
TTCTGGCGCAGGAACCGCAGGAAAATGGCTGCTACTAGTAGCACTGTGCT
ATTGCCTGCATTGGTGTAGCGCTGCGGATGCCCCCGTCACACTTCTTCCT
CCAAACCATGTGGTTGAAGGCCAGCTAGCATCGAATTCCTACCGGTACTA
TGAAGTCGTCGGCTCAGGGCGCTCGGGGCAAGATCTGGTCCTGACGGCGA
CCCCCCTAGGCGGGGACGTGGACTTGTACGTCTCCTTGGGCTCGGACCTG
GCTCTTCCCACCCGCGAGCGATACGAGTGGGCCTCCTCCCACTTGGGGGC
TGATTCCCTGGTGATCGTGGACGAGGATCCTAAGAACTGCCAGCACCAGC
CGCCGGCGCATCCGGGGCAAGCGCCTGCGGCCTGTGTCTACCGCGTCGGG
GTCTTTGGGTACCTGGGGGGGGGCTTCTCGCTCCTGGCTCGCTGGAACAA
CTCGGAGCCCGTGCCGCTGGCCTTGGGCAGGCCTCAGAGCGACGCGGTGA
CGGCGGGGACTTTCCGGCAGTACAGCTTCGACCTGTCGCCCAAGGCCTTG
GCCGGCGACGGGGGGGGGCAGGGAGCGGACGCGAGCACAGGCGCGACGCC
GGCGGTGGATCTGGAGGTGTTGCTGCACCCGCTGTTGGGGGACCCCGACA
TGTACGTGACCCTGGACGGAGAGCGGCCCGGCGGCGAGCACTACCAGTAC
CAGAGCTCGGACTGGGGCGCGGCGGTCGACCGCATCGTCCTGGGCCCGCA
CGACCCGCGGTTCCAGCGGTGGTGTCCCGAAGGGCGGTGTCAGGTCCGGA
TTGGGGTGTTTGGCTTTCGCGAGGCCTCCTTTTCCTTGCTGCTCTCGGCC
TTCACGGAGCCGATCCGCCTGCAGCTGGACCAGCCCATATCCTTGACCCT
GCGGCCCACGCTGGCGCAGCGTTTGACAGTGCCGTGGCCGGGGGCGGCGG
ACGTGGGGAGCCTCCGCGTCTCGGTCTCGCCCCAGTCCGGTCCCGCCCCG
CGGCTCTACGCCTCGTGTCGCTCCAGCCGGCCCAACGCCACTGTGCACGA
TTGGGAGCTGGAGGGAACGGCCACGCTGTCCGGGCAAAGCCTCGTGATCG
ACACCGCCTTGGGCACCAACAAGGGCTGTGATGCCGGGAGCAACCTGACC
CTGGCCGTGGCCGCCGACTCTCTCGCTTCCCTCTCCTTGCTCGTGTCCAC
GGACGCGGCGGGCAGCATTCCCCGCCTCCTGCCTGGCCTGCAGACCCCCG
GGCGGGCCCACAACGGGGCCATGGCCTACTTCGCCGTGCGCGTGGGCGGG
GCTGACTACACGGACGTGGAGCTCGTTTTGACCGTCACCAGTGGCGAGGC
AGACATGTACGTGTCGGACTCGTACGAGGGGCGTCCGCGAATAGACGCGA
CCACGGGGGTGGTGTCGAGCTATAGCCTGAGCAGCGCGCAGGAAGGCGAT
GACAGGTTGACCGTGAAGCATTCGCTTTTCAAGGACTGCGGGGCCAGGGC
GGGGCGCGACGGGAAGGGAGGGGGGGGGGGCTCTGGTTGCTTCGCGATCG
TGGGCGTGTTGGGTCGACAATTTGCCTCGAGCGAGTTCCGACTGTTGGCC
AAAACGCTGGATTCGACCCTGACACTGCACGATGGCGTGGCGGTGCGCGA
CACCGTGGCCGCGAAGGCCTACGCCTGGTACAAGATCCTGGTGGTCAACC
CGCAGCTGGACTTGACGCTGGCCCTCACCCCTCTCAGCGGTGACCCCGAC
TTGTACGTTGGCGTGCCCCCCGTCATGCGCCCCACCAAAGGCAACCATAC
GTGGGCTAGTCGGAGCTTCGGCGCGGACTCCCTGACCGTACAGGCGGCGG
AGCTGCGGGGACACTGCGAGCCGGACCCGAGCCTAGGGGTGGGTTGTCCT
GTGTACGTCGGGGTGTATGCGTGGTCGCGCGCGAGCTTCTCGATCATGGC
CTCGCTGAACACGGGATGGCTCAATCCCTCCGTCCTGATACCCGGCCTCC
CCCAAAGCGGCGAGGTGGCCAAGAGCGCCTACCACTATTACCAATTCCGA
ATACCGGCCGGGGTCGACGGGGCCGTGGAGCCCCTGGTGCGCATCACGCT
TCTGCCTGAGGACGACACGGACCAAGACTTGTACGTGACCTTCAGCGCAG
AGAAAGAGCCGGGAAAAGAGAACTTCGACGCGCGATCCACGTCCTGGAGC
GACAACGACGAGGTCTTGCTCGCGCCTGGCGGCCCGCACTACTGCACGGG
GTGCTCCGTCTACGTGGCGGTGTATGGCTACGACGCAGGGCCTTACTCCC
TGGTGGCGACCCTGAGCACGACACAGCAACAGCTGCAGCTAGGAGTGCCG
GTGCGAGGGGCAGTGGCAGCCGCTTCCTCGTCCTTCTACGTGGTGGACTG
GCAGGGAGGGAGCGAGGGAGGGGGGCAGGGTGGGGAGGCTTTGGGGTTGG
CCGTGACTTTGACGCCGGAGGCCGGGCGGCCGCAGGTATACGCCTCGTGC
TCACTCGCTTACCCGAACGCGACGACGCACATGTGGGCGCTCGACAGCCG
CGAAGACCAGGTCCTGCACGTCAACGTGTCCTCAGGGACAGGGCCCGGCG
GGGCGCCATGCCGGCACCCGGGCAAGCTCTGGCTGGCCGTGGCAGCGCCT
CGAGGGGGCGGGGGGGCGGCCTCCTACAGCCTTCTCGTCGCGGCGGACAA
CGCGTCGACGAGCATGCCCTTGCTGGTCCCAGGCACCCCTACGGCGGGAA
TGGTGCGCTTCCACCGATTCCAGTACTACCAAGTGCGGACGGGCGCAGGA
AACGTGGACATGGACGTGGTTTTGAGCGTGATTCGGGGGCAGGCCGATGT
CTTCGTCTCGCAGACCTTCGAGGGCCGGCCCGTCTACGATGCGGCCCATA
ACAAGGTCCGGAATTGGACGGCGAAGTCCACGTCGAGAGGAAGTGACCGC
CTGCTCGTCCCTCGCACGCTCTTTCCCCCCTGCGAGAAGGACTGTTACTT
TGTCCTGGGCGTGTTCGGCAAGAGCGTGGTGCCGCCGGCTCGGTACTCCT
TGGTGGCTAGGAGGGCCGAGGGCATCGTGGCCTTGCAGGACGGGGTAGCC
CTGCGCGACGAGGTGGGCGAGGGCGAGTACTTGTACTTCTCGTTCAAGCT
GACGGACCCGGAGGCCGATGTGAGCATCCACTTGACGCCCTTCAACGGCG
ACCCCGACCTTTTCGTGGCCCCCGCCCCCAACGCCCGCCCGAGCGCGACC
AACCACACGTGGGCGAGCCGGTCCCTGGGCCCGGACACGCTGACGTTGCA
GTGCAGCGACATGAAGACGCACTGCGCGCCGGACCCATCCCGGGGCCTGG
CCTGTGACTACTTTATCTCCGTGTATGGCTACGAAAACGCGTCCTTCTCC
CTCCTGGTCTCATTGCACCAGGGCTGGCGGGAGCCGATCGAGCTTTTCCC
CGGCTTGCCTCAGGCGGGGGAGGTGAACGAAGGAGAGTACGTGTACTACT
CCTTTTACGTGCCTCCCGACACTGTCAGCTTGCAATTTGTGCTGACGCCG
CAAGACCTGTGGGGCGAGGACAAGGACGAGGCGGACGACTGGGACGTCTG
GTCGGACGACTGGGACGATGTCGCGGACCAGGACCTTTTCCTCACGACCT
CGCGGGATCGGGAGCCAGGCGAGGACACCTTCGACCTGAGGAGCACCAGT
TGGGCGGGCGTGGAGGAGATCACGTACTCCGCGGCGGAGCTCCAGGAGGA
GGGTGTCTTTTGCACCGGGTGTACTGTGTACCTGGCTGTGTACGGGTACG
CCGGGCAAGGGGGCGAATACACGCTGCGGGTCGAGACGGGGCTGGTGACG
CTCCAAAATGCCGTTCCCGTCACCGGCCATCTCGTCAAAGGTGGGGCCGC
GCACTACAAAATTTACAGCCGAGACTCGAACGCCCATCTGCTCTTTTCGG
CCGTGACCCTGTCGGGCGATGCGGACCTCTACATCTTGGCCGTGGAACCA
CCAGCGGCGGATGACGACAACGAGGATACCCAAGAAGTGCTGCCCAGCAA
GGAGCATTACCACTGGAAGGGTGACCAGGTTGGGGACGACGTCGTGGAGA
TCGTGCCATCGGATGCCCATTTCTGCTCCGAATGCGACTTTCTGGTGACG
GTGGCGGCCTTCACGAACACCTCCTACGTCCTGACGGCCTCCGTGGAGGC
GATGAGCATCGTGCCGTTGGCGGGAGGACGGCCGCAGGTCGGGCATGTCG
ACAGGGACAACATGCAGTACTTCTCCGCCGTGCTGGGCTCGTCCACGGAG
GGCCTGCGCGTGAGTCTGACCCTCTTTTCAGGACACGCAGAGATCTTCGT
GGCGGACCGCGTCGACCCCTCCCGGCTGCCTTTGCCCGAGGACCCGACCA
GCTGGCGGTACTCCTCGCGCAGCAACTCCAGGGGGCGCAACGAGGTCGTC
ATTCCCGGGCCCCACCGCAACCGGACACGCTTCGCGATCGGCGTGCGGGG
CCTGGAGGATGCCTCGACCTTCAGCATCCTCGCCTCCTTCTCCCAGAGCC
TCATCTTCTTACAGGAAGGCGTGCCTGTCCAGCAAAGCCTCGCGCCTGGG
CGCATGGCGTGGTTCGTGCACCGGCTTGCGCGGAAGGAGGACGTGCGGGT
GGCCGTGACGGCCCTGTCTGGAGACCCCGATATCCTGGCCAGCACCCTAC
ACCCCCGCCCCGCCTGCGTGCGACCCCCGGGCAGCAGTGAGGGGGAGACG
GGGACGGCCTCTTACGTCTGTGGCAATTACACGTGGATGGCGCAGACCTA
TCAAAGCGACGAGTTAGTGATCTTGCACGATTTGCCCTGTGAAGAGGTGG
GGAACACGCGCGTGAATACGAGTGCGTGCGCGCCGTACATGCTTTCGCCG
GGCCACTCCCTGTATGTGGGCGTTTTTGCTTACGACAACACAGCCGACAC
GACGTTCACCCTGACACTCACAACGGGGAGCGGCCACACCAAACTTTTGC
CGGGGAGACCGCAGCACGGGAATACGCGGCTGGGGGCAATCTGCAAGAGG
CGTCGCGCCGATGGGTCGTGTGATACCTCCACTGCAGAACCGCCGGCGGA
TTCGTCGAAAGCTTATGTGGCCTACTACAGGTTTCTGGTCTCCCCACCTT
CAGCTCTCTTTGGAGAAGACGAGGCTGCGCACGTCTCAGTCGTGCTCGAG
CCCGTATGTAACGCTACCACGTTTACGTGGGAGGGGCTGGAGACCTGTCG
CGTAGGCTGCCCTTGTGACCCCTTGGAGCTGTACGTGTGGTCGTGCGCCG
AGAGCCAGTGCACTTCTGAGGACGAGTATCCCCACCCTGACCACTACCAG
ACGAGGCACATTGCGGCGCAAGCCTATAACACAGTCTTCCTCGCGCATGA
TAAATACAATCCCAACAACGGCTTCTGCAATCCTCAGACGGCCGGCGAGC
CCTGCCTCTATTTCATCACTGTCTATCATCCCGAGGGCGGAGGAGTCAGT
AGGGCCGTCGAGGGGGGGGGATTCACCATCACGGCCAGCACCAACCACGA
CGTGACTATCTTACCCACCCGCCGCCACCCTCCTCCGCCCGACGGCCTCG
TCTCATCGAATCTGGAGGCTGTGGACATCACTGTGGGCGGGAGAATGGGC
AGCAAGCGCTATCAAATGTATGCCCAGCAAGGCGGGGATGTGCAGCTGGT
GTTGGAGCCCTGCACGGGCTCCATGAGCCTGGCGGTCTGCGACGGCTCGT
GCGTCGGCCTCTACCCGACCGAGCACGACTATCGGTACCTGGCAGACTCC
ACACAGACGTGTACTCGAGAGGGATGCCGCCCGTTGCCCGGGGCTCAGGC
CATGCCTCGCATCGACATCAAGGGCGTGGCGGAGGACTCGCTCTTCGTGG
CAGTGAACGGAACAGGGGTATACAGTCTGCGTGTGGCGATGACGACAGAG
GGTCACGCCATCGCGCCCGTACTGGCCCCGGCGACAGGATCGCCTGCCCC
CTCCTTGAAGCACGTACACAGGGATAGCGTGACGGTGACCTGGCCTGCCG
CTACCTTGACGGTGCCGGGGAAGAAATCGGGCCGTGGAGGGGGAAGAGGG
ATGCAGGCGCATGGCGTAAGATACAAGGTCTTCGCTTTTCCTGAGGCGGT
CCTGCAGGCTTTTCGTCAGTCAGCAAGCCCAGCAGAAGCGCCGGTCTTGC
ACACTGTCTGTGGGGTGGAGCGTTATGCGGCAAGAGGCCAAACGGCTGAG
ACCACGGGCGAGGGGCCACTCCCAACGAGTTACGTGGGCGATGTTGCGGA
AGGGATGACCACCCACACAGTGACCGGCTTGGCACCTGGCACCGAGTACC
TCTTTATGGTGGTGGGGTCGTGCGACCAGGCTTGCCTGCGCGCGAATAGC
AAATCTGCTGGGGGAGAGATCTTGCCTTGCGGGGGGGCAGTCCCCTGTCA
GGACCAGCGTAGTCTCTACCCGCCAACGCGGGCTACGACAGCTTCGGGTG
CCTGGGTTGGGGGCGTGGGGAGTGGGGCCCGGGAACTTTGGCGATGGGTC
CTTTTGGTCATCGGCATTCTGGCGATCGTTGGTTTTTTGGTGCGGCGGAA
AATTCTGCACAGGGGAGGTGGGAGTGGGGGCGTGCTTGGAAGAAACGGGT
TGAGGGAGGGGCGATCACGGGTGGGACGTCCACAACAGGTAGATTATGAG
ATGACGGTTAGCCCCACTGGTTCGTGTGCCGCCGGTCAACCAAGAAATGA
ATTTGCCTCTCCACGGGATGGAAGAGGGGCTGGGAGAGGACGATACGAGG
GAAGGTGTTTCCAGCCTATCGACCCGCTTGGTCTAGACCCTGGTGGTGGT
AACAGGCGTGTACAAAGACCGAACGCTGCACAAAGACCGTCTGCAGGCGG
CTTGAGACAATATCATCCCGCGTGGCATCTGTGTGCTGCAACTAACGAGT
AG back to topprotein sequence of rna1904 >rna1904-protein ID=rna1904-protein|Name=rna1904|organism=Nannochloropsis gaditana|type=polypeptide|length=173bp
MASTSQSSPASPAPKGIYRPKLNLAYLFPHLRVEREVLRDLGDNVEMDPL
GILDHGKCVLFAQPPPDIVTRLFFHFPGRAIRRRLPLVHFPLGEGPALPV
PIADEENLVLRPIQAHTSVDWHRVLIAVKCLHEIRVEEEHPGAHPPESLH
STNTPVQAGKTSGPPRQALPPVD back to topmRNA from alignment at CM002458.1:442547..443390+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna1904 ID=rna1904|Name=rna1904|organism=Nannochloropsis gaditana|type=mRNA|length=844bp|location=Sequence derived from alignment at CM002458.1:442547..443390+ (Nannochloropsis gaditana)
atggcctccacgtcccaaTCCTCGCCCGCGTCGCCCGCCCCGAAGGTGGT
GGCGTTGTGCGCGTCCGCCGCGgcctcccatcttccttgCGCGCGGCCAT
TCCTGACCCCTGGCGCCGATTTAgcacgtcctccctttcctgcgcTCGAG
GATCTTGGCCCCTGCTGCCATGGCCCCCCTCGCTTGGGCGTCTTGGACGA
CCCCGCCCTCACGCGCCCTGAGCCctgccgcttcttctcctgccagTGTC
TCACATGATCCAAAGGTCGTGTCAAGCCGTACGCGTCCTTAGGTAGGGAA
TTTATCGGCCAAAACTTAACCTCGCTTATCTCTTTCCTCACTTGCGGGTA
GAAAGGGAAGTCCTCCGGGACCTCGGGGACAATGTAGAGATGGATCCTCT
TGGCATTCTGGACCATGGTAAAtgcgtcctcttcgcgcAGCCGCCCCCTG
ACATCGTAACccgtctcttcttccacttccctGGCCGCGCAATCCgccgg
cgcctccccctcgttcaCTTTCCCCTTGGGGAGGGTCCagcccttcccgt
cccaATTGCAGACGAGGAGAACCTTGTCCTGCGCCCGATTCAGGCACACA
CATCCGTAGACTGGCACAGAGTACTTATAGCTGTTAAATGCCTTCACGAG
ATCCGCGTGTGATTCTTTCAGGTGCTGCAAACACTCTGAGCGCGTGAAGA
GGGCTCGGGTGAAAGCTTCTAGGCTGAAGTGAGGAAGAGCATCCGGGTGC
GCATCCGCCAGAAAGTCTTCATAGTACCAATACGCCTGTTCAAGCTGGAA
AAACAAGCGGTCCACCGAggcaagctcttcctccggtagattga back to topCoding sequence (CDS) from alignment at CM002458.1:442547..443390+ >rna1904 ID=rna1904|Name=rna1904|organism=Nannochloropsis gaditana|type=CDS|length=1566bp|location=Sequence derived from alignment at CM002458.1:442547..443390+ (Nannochloropsis gaditana)
atggcctccacgtcccaaTCCTCGCCCGCGTCGCCCGCCCCGAAGGGAAT
TTATCGGCCAAAACTTAACCTCGCTTATCTCTTTCCTCACTTGCGGGTAG
AAAGGGAAGTCCTCCGGGACCTCGGGGACAATGTAGAGATGGATCCTCTT
GGCATTCTGGACCATGGTAAAtgcgtcctcttcgcgcAGCCGCCCCCTGA
CATCGTAACccgtctcttcttccacttccctGGCCGCGCAATCCgccggc
gcctccccctcgttcaCTTTCCCCTTGGGGAGGGTCCagcccttcccgtc
ccaATTGCAGACGAGGAGAACCTTGTCCTGCGCCCGATTCAGGCACACAC
ATCCGTAGACTGGCACAGAGTACTTATAGCTGTTAAATGCCTTCACGAGA
TCCGCGTTGAGGAAGAGCATCCGGGTGCGCATCCGCCAGAAAGTCTTCAT
AGTACCAATACGCCTGTTCAAGCTGGAAAAACAAGCGGTCCACCGAggca
agctcttcctccggtagattgaatggcctccacgtcccaaTCCTCGCCCG
CGTCGCCCGCCCCGAAGGGAATTTATCGGCCAAAACTTAACCTCGCTTAT
CTCTTTCCTCACTTGCGGGTAGAAAGGGAAGTCCTCCGGGACCTCGGGGA
CAATGTAGAGATGGATCCTCTTGGCATTCTGGACCATGGTAAAtgcgtcc
tcttcgcgcAGCCGCCCCCTGACATCGTAACccgtctcttcttccacttc
cctGGCCGCGCAATCCgccggcgcctccccctcgttcaCTTTCCCCTTGG
GGAGGGTCCagcccttcccgtcccaATTGCAGACGAGGAGAACCTTGTCC
TGCGCCCGATTCAGGCACACACATCCGTAGACTGGCACAGAGTACTTATA
GCTGTTAAATGCCTTCACGAGATCCGCGTTGAGGAAGAGCATCCGGGTGC
GCATCCGCCAGAAAGTCTTCATAGTACCAATACGCCTGTTCAAGCTGGAA
AAACAAGCGGTCCACCGAggcaagctcttcctccggtagattgaatggcc
tccacgtcccaaTCCTCGCCCGCGTCGCCCGCCCCGAAGGGAATTTATCG
GCCAAAACTTAACCTCGCTTATCTCTTTCCTCACTTGCGGGTAGAAAGGG
AAGTCCTCCGGGACCTCGGGGACAATGTAGAGATGGATCCTCTTGGCATT
CTGGACCATGGTAAAtgcgtcctcttcgcgcAGCCGCCCCCTGACATCGT
AACccgtctcttcttccacttccctGGCCGCGCAATCCgccggcgcctcc
ccctcgttcaCTTTCCCCTTGGGGAGGGTCCagcccttcccgtcccaATT
GCAGACGAGGAGAACCTTGTCCTGCGCCCGATTCAGGCACACACATCCGT
AGACTGGCACAGAGTACTTATAGCTGTTAAATGCCTTCACGAGATCCGCG
TTGAGGAAGAGCATCCGGGTGCGCATCCGCCAGAAAGTCTTCATAGTACC
AATACGCCTGTTCAAGCTGGAAAAACAAGCGGTCCACCGAggcaagctct
tcctccggtagattga back to top
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