rna1901, rna1901 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1901
Unique Name	rna1901
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1334
Alignment location	CM002458.1:427916..429395 -

Link to JBrowse

Properties


Property Name	Value
Product	Bromodomain protein
Orig transcript id	gnl\|cribi\|Naga_100002g120.4798.mrna
Orig protein id	gnl\|cribi\|Naga_100002g120.4798
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:427916..429395 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100002g120	gene1816	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1901	rna1901-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28679.1	cds1896	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:427916..429395-
coding sequence from alignment at CM002458.1:427916..429395-

mRNA sequence

>rna1901 ID=rna1901|Name=rna1901|organism=Nannochloropsis gaditana|type=mRNA|length=1334bp
ACGAAATCTTTTGTTTATTACATTAAATCTATACACGATGTCCTACAGGT
TGGTTGGGACGCTTGAGAGGGAGATTGGAGACATTTGTTTTCAAGTCGTG
AAAGAAACGGAATCGAGACCCATGCAGTGTGCGATAAGGAGGACACAAGG
GCATCCCATAGAAAGACATGGCTAATTGGGTTCTCGTATTCCCTAATTGC
AGAGCAATGTGCCCAGGGATGGAGGATCCTAGCAGTGTAGTTATGGTCGT
GTGAGACATCGAACAGTTCGGAATGGGCCTGCAGGATCTGAAAGCGTTAT
CCTCATCCTATGCGCCTCCACGCGCGACCGCTCCTGATCGTGTATGATTT
CGAGCGCAAAAGCATTAAAGGCTTTTTGTCTGTGATATATAGTCTTATCT
GACGTATTGGCGACGCGGGGATAGAATAATGTCGTGGGTGTTCCTCTCAC
TCATTGCGAATTGCCCCACCTAGAAAAAGTCAAGAAAAGGCCATCATGCA
TAAGCCATCCCAGTATGCGTGAAGTCATGTCAAACTTTCGGGAGCAAGAA
GAGGAACAGCGAGAATTTTTGCTCCACCGCCCTCCCCAGGACCGGACCTC
CCTTTCCCCCCCGCACGGCCGGTCCATCGCCATGACGGACATCTTCGAGT
CCTATGAAGACGAGTTCCGCGCGCTGGCGGGCGATTGTCAGAAGAAGCTC
TCCAACCTCCTCACCTACGAGACGCATGGCGACAAGATACAGAGCCTTCT
CCGGCAAGCCTCCCCTCAGGTCACCCAGCTCGAGGGCCTGATCAAGCAGA
TGAAGCTGGAGGTCCGTTCGCTGGACGCGGGCACGAAAGCCGCCCTCTCC
GCCAAAGTGCAGACCTACGAGAGGGTCTTGACCGGGGTCAAGGCCGACCT
GGGCCGCGCGCGGGAACGGGAGGAGAAGGACGCGTTGCTAGGAGCGGGGG
GGGGCGTGTCGATGGTGCAGCGACAAAGATTGCTCGAGACGAGCGAGAGG
CTGGCGCACCAAAACCGGACTATTGACAACGCGCGGAAGGTGATGGCGGA
GACGGAGCAAGTCGGCATTCATATCGGAGAGGAGCTGGAATCGAACCGGG
AAAAAATTCAGAGTATTCGAGGCAAGGTAGGTGAAGGGCAGGGTATGACG
GAGCACGCAAGGAAACTAGTCAAGGAAATGACCTCAAGATGGTTTTGAAG
GATAGTGCTCGTGATGCGGAAAAATGAGTCGAGGCATCGATAAATCGTTG
ATTCTGGCGTTTTCTTTTCCCAATGCGTACGCGAACACCATTTCTCCACA
TGGCTTATGAGGACGTACCTCGAGCACCTCCAGG

protein sequence of rna1901

>rna1901-protein ID=rna1901-protein|Name=rna1901|organism=Nannochloropsis gaditana|type=polypeptide|length=366bp
MSSATPAYRSRALEEEMDKFRSMIQNFASPVPTDYIHTLPPDFVQYAASV
RAASGSDAGKSRPRLSLVDVARSMATTQAFGRPMEGFSEDQVRRAFSLGD
WEGGSSSPSLRNTAKVPEPIYREIRPIHIRDGSVLSTDQGKGTEEKAAGK
KTVEAAPAVPKLMAVQGSVPPTAKRPKLKAGFLKPADSSTALPEAPSSAE
SAPVLAPPASQPPAPAPSPLVLPPVPKVDVSKLTGQRRVSDLTQPEVLTI
AEEVTKKLRAKRGKGMWRRQNPLDTEITRENCAALGIPGYFDVVERSMSL
QVINRKIRDSEYRALRDFVDDVELMVQNAKTFNAPAHPVHAFAEETRLLF
ARLLEGHKKDYALREE

mRNA from alignment at CM002458.1:427916..429395-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1901 ID=rna1901|Name=rna1901|organism=Nannochloropsis gaditana|type=mRNA|length=1480bp|location=Sequence derived from alignment at CM002458.1:427916..429395- (Nannochloropsis gaditana)
TTTGGACGGTAGCTTGTAGCCGATGGATGTCGCCCGATAATTGGAGGTCA
TCTCTCGCACAGCTCATGCAGCCCCTCACACATACAGCACACCATGTCCA
GTGCGACCCCTGCTTACCGCAGTAGAGCTTTGGAAGAGGAAATGGACAAG
TTCAGGTCCATGATTCAAAACTTCGCCTCTCCCGTGCCCACCGACTACAT
TCACACCCTCCCCCCCGACTTTGTGCAGTACGCCGCCTCGGTTCGGGCCG
CATCCGGCAGTGATGCCGGAAAGAGCAGGCCGCGCCTATCATTGGTGGAT
GTTGCACGCAGCATGGCGACCACACAGGCCTTTGGGCGGCCGATGGAGGG
CTTCTCCGAAGACCAAGTGCGGAGAGCCTTCAGTTTGGGGGACTGGGAGG
GCGGCTCGTCTAGCCCCTCCCTTCGGAACACGGCCAAGGTGCCAGAGCCC
ATCTACCGCGAAATACGTCCAATACATATCCGAGACGGTAGCGTCCTGTC
TACCGACCAAGGGAAAGGGACGGAAGAAAAAGCTGCCGGCAAGAAGACAG
TGGAGGCGGCTCCTGCAGTCCCTAAACTTATGGCAGTCCAAGGGTCCGTC
CCTCCCACAGCGAAACGGCCCAAACTAAAAGCAGGCTTTCTAAAGCCAGC
CGACTCTTCAACAGCCCTACCTGAAGCCCCGTCCTCAGCTGAATCCGCGC
CTGTCCTAGCCCCTCCGGCGTCGCAACCGCCTGCCCCGGCACCGTCCCCA
CTAGTCCTGCCACCTGTCCCTAAGGTGGATGTATCCAAGCTGACGGGCCA
GCGCCGTGTCTCGGACCTGACGCAGCCGGAAGTCTTGACGGTAAGAGGCG
GGCTTACCGGGGACGGCCGGAGGATCCGGCGTGGCCCCTGCTTCCTTCCC
CCCCCTCTGGTCGAGATGCTCACCTCCCCTGACGCCTGATCCCACAGATC
GCCGAGGAGGTCACGAAGAAGCTGCGGGCCAAGCGGGGGAAGGGCATGTG
GCGGAGACAGAACCCCTTGGACACGGAAATCACCAGGGAGAACTGTGCCG
CCCTGGGGATTCCCGGGTACTTCGACGTCGTCGAGCGCTCCATGAGCCTG
CAGGTCATCAATGTAGGACCGGGAGGGCGGAGGGAGGGAGGGAGGGAAGG
AGGGATACAGGTCATTAACGGTGGAATGGGAGCAGAGCGGGAGGGAGGGA
GGGAGGGGGGGTATGGCCAAGCCTGGTCCGTGGTCGGCGGTCCGAGGCAT
TCTTTGCTCACCCGCTCTTGTCCCTCCCCACAGCGCAAGATCCGCGACTC
GGAGTACAGGGCCCTGCGAGACTTCGTGGATGACGTGGAGCTGATGGTGC
AGAACGCCAAGACCTTCAACGCGCCCGCCCACCCCGTGCATGCCTTTGCG
GAGGAGACGCGGCTGCTGTTCGCGCGGTTGCTGGAGGGGCACAAGAAGGA
CTACGCCCTCCGGGAGGAGTGAGGCGGGGG

Coding sequence (CDS) from alignment at CM002458.1:427916..429395-

>rna1901 ID=rna1901|Name=rna1901|organism=Nannochloropsis gaditana|type=CDS|length=3303bp|location=Sequence derived from alignment at CM002458.1:427916..429395- (Nannochloropsis gaditana)
CGCAAGATCCGCGACTCGGAGTACAGGGCCCTGCGAGACTTCGTGGATGA
CGTGGAGCTGATGGTGCAGAACGCCAAGACCTTCAACGCGCCCGCCCACC
CCGTGCATGCCTTTGCGGAGGAGACGCGGCTGCTGTTCGCGCGGTTGCTG
GAGGGGCACAAGAAGGACTACGCCCTCCGGGAGGAGTGAATCGCCGAGGA
GGTCACGAAGAAGCTGCGGGCCAAGCGGGGGAAGGGCATGTGGCGGAGAC
AGAACCCCTTGGACACGGAAATCACCAGGGAGAACTGTGCCGCCCTGGGG
ATTCCCGGGTACTTCGACGTCGTCGAGCGCTCCATGAGCCTGCAGGTCAT
CAATATGTCCAGTGCGACCCCTGCTTACCGCAGTAGAGCTTTGGAAGAGG
AAATGGACAAGTTCAGGTCCATGATTCAAAACTTCGCCTCTCCCGTGCCC
ACCGACTACATTCACACCCTCCCCCCCGACTTTGTGCAGTACGCCGCCTC
GGTTCGGGCCGCATCCGGCAGTGATGCCGGAAAGAGCAGGCCGCGCCTAT
CATTGGTGGATGTTGCACGCAGCATGGCGACCACACAGGCCTTTGGGCGG
CCGATGGAGGGCTTCTCCGAAGACCAAGTGCGGAGAGCCTTCAGTTTGGG
GGACTGGGAGGGCGGCTCGTCTAGCCCCTCCCTTCGGAACACGGCCAAGG
TGCCAGAGCCCATCTACCGCGAAATACGTCCAATACATATCCGAGACGGT
AGCGTCCTGTCTACCGACCAAGGGAAAGGGACGGAAGAAAAAGCTGCCGG
CAAGAAGACAGTGGAGGCGGCTCCTGCAGTCCCTAAACTTATGGCAGTCC
AAGGGTCCGTCCCTCCCACAGCGAAACGGCCCAAACTAAAAGCAGGCTTT
CTAAAGCCAGCCGACTCTTCAACAGCCCTACCTGAAGCCCCGTCCTCAGC
TGAATCCGCGCCTGTCCTAGCCCCTCCGGCGTCGCAACCGCCTGCCCCGG
CACCGTCCCCACTAGTCCTGCCACCTGTCCCTAAGGTGGATGTATCCAAG
CTGACGGGCCAGCGCCGTGTCTCGGACCTGACGCAGCCGGAAGTCTTGAC
GCGCAAGATCCGCGACTCGGAGTACAGGGCCCTGCGAGACTTCGTGGATG
ACGTGGAGCTGATGGTGCAGAACGCCAAGACCTTCAACGCGCCCGCCCAC
CCCGTGCATGCCTTTGCGGAGGAGACGCGGCTGCTGTTCGCGCGGTTGCT
GGAGGGGCACAAGAAGGACTACGCCCTCCGGGAGGAGTGAATCGCCGAGG
AGGTCACGAAGAAGCTGCGGGCCAAGCGGGGGAAGGGCATGTGGCGGAGA
CAGAACCCCTTGGACACGGAAATCACCAGGGAGAACTGTGCCGCCCTGGG
GATTCCCGGGTACTTCGACGTCGTCGAGCGCTCCATGAGCCTGCAGGTCA
TCAATATGTCCAGTGCGACCCCTGCTTACCGCAGTAGAGCTTTGGAAGAG
GAAATGGACAAGTTCAGGTCCATGATTCAAAACTTCGCCTCTCCCGTGCC
CACCGACTACATTCACACCCTCCCCCCCGACTTTGTGCAGTACGCCGCCT
CGGTTCGGGCCGCATCCGGCAGTGATGCCGGAAAGAGCAGGCCGCGCCTA
TCATTGGTGGATGTTGCACGCAGCATGGCGACCACACAGGCCTTTGGGCG
GCCGATGGAGGGCTTCTCCGAAGACCAAGTGCGGAGAGCCTTCAGTTTGG
GGGACTGGGAGGGCGGCTCGTCTAGCCCCTCCCTTCGGAACACGGCCAAG
GTGCCAGAGCCCATCTACCGCGAAATACGTCCAATACATATCCGAGACGG
TAGCGTCCTGTCTACCGACCAAGGGAAAGGGACGGAAGAAAAAGCTGCCG
GCAAGAAGACAGTGGAGGCGGCTCCTGCAGTCCCTAAACTTATGGCAGTC
CAAGGGTCCGTCCCTCCCACAGCGAAACGGCCCAAACTAAAAGCAGGCTT
TCTAAAGCCAGCCGACTCTTCAACAGCCCTACCTGAAGCCCCGTCCTCAG
CTGAATCCGCGCCTGTCCTAGCCCCTCCGGCGTCGCAACCGCCTGCCCCG
GCACCGTCCCCACTAGTCCTGCCACCTGTCCCTAAGGTGGATGTATCCAA
GCTGACGGGCCAGCGCCGTGTCTCGGACCTGACGCAGCCGGAAGTCTTGA
CGCGCAAGATCCGCGACTCGGAGTACAGGGCCCTGCGAGACTTCGTGGAT
GACGTGGAGCTGATGGTGCAGAACGCCAAGACCTTCAACGCGCCCGCCCA
CCCCGTGCATGCCTTTGCGGAGGAGACGCGGCTGCTGTTCGCGCGGTTGC
TGGAGGGGCACAAGAAGGACTACGCCCTCCGGGAGGAGTGAATCGCCGAG
GAGGTCACGAAGAAGCTGCGGGCCAAGCGGGGGAAGGGCATGTGGCGGAG
ACAGAACCCCTTGGACACGGAAATCACCAGGGAGAACTGTGCCGCCCTGG
GGATTCCCGGGTACTTCGACGTCGTCGAGCGCTCCATGAGCCTGCAGGTC
ATCAATATGTCCAGTGCGACCCCTGCTTACCGCAGTAGAGCTTTGGAAGA
GGAAATGGACAAGTTCAGGTCCATGATTCAAAACTTCGCCTCTCCCGTGC
CCACCGACTACATTCACACCCTCCCCCCCGACTTTGTGCAGTACGCCGCC
TCGGTTCGGGCCGCATCCGGCAGTGATGCCGGAAAGAGCAGGCCGCGCCT
ATCATTGGTGGATGTTGCACGCAGCATGGCGACCACACAGGCCTTTGGGC
GGCCGATGGAGGGCTTCTCCGAAGACCAAGTGCGGAGAGCCTTCAGTTTG
GGGGACTGGGAGGGCGGCTCGTCTAGCCCCTCCCTTCGGAACACGGCCAA
GGTGCCAGAGCCCATCTACCGCGAAATACGTCCAATACATATCCGAGACG
GTAGCGTCCTGTCTACCGACCAAGGGAAAGGGACGGAAGAAAAAGCTGCC
GGCAAGAAGACAGTGGAGGCGGCTCCTGCAGTCCCTAAACTTATGGCAGT
CCAAGGGTCCGTCCCTCCCACAGCGAAACGGCCCAAACTAAAAGCAGGCT
TTCTAAAGCCAGCCGACTCTTCAACAGCCCTACCTGAAGCCCCGTCCTCA
GCTGAATCCGCGCCTGTCCTAGCCCCTCCGGCGTCGCAACCGCCTGCCCC
GGCACCGTCCCCACTAGTCCTGCCACCTGTCCCTAAGGTGGATGTATCCA
AGCTGACGGGCCAGCGCCGTGTCTCGGACCTGACGCAGCCGGAAGTCTTG
ACG

Synonyms

Publications