EWM28679.1, cds1896 (CDS) Nannochloropsis gaditana

Overview
NameEWM28679.1
Unique Namecds1896
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:428556..429302 -
Alignment locationCM002458.1:428284..428448 -
Alignment locationCM002458.1:427924..428112 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28679.1
ProductBromodomain protein
Orig transcript idgnl|cribi|Naga_100002g120.4798.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:428556..429302 -
CM002458.1supercontigCM002458.1:428284..428448 -
CM002458.1supercontigCM002458.1:427924..428112 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR001487Bromodomain
Homology
BLAST of EWM28679.1 vs. NCBI_GenBank
Match: gi|585111102|gb|EWM28679.1| (Bromodomain protein [Nannochloropsis gaditana])

HSP 1 Score: 741.495 bits (1913), Expect = 0.000e+0
Identity = 366/366 (100.00%), Postives = 366/366 (100.00%), Query Frame = 0
Query:    1 MSSATPAYRSRALEEEMDKFRSMIQNFASPVPTDYIHTLPPDFVQYAASVRAASGSDAGKSRPRLSLVDVARSMATTQAFGRPMEGFSEDQVRRAFSLGDWEGGSSSPSLRNTAKVPEPIYREIRPIHIRDGSVLSTDQGKGTEEKAAGKKTVEAAPAVPKLMAVQGSVPPTAKRPKLKAGFLKPADSSTALPEAPSSAESAPVLAPPASQPPAPAPSPLVLPPVPKVDVSKLTGQRRVSDLTQPEVLTIAEEVTKKLRAKRGKGMWRRQNPLDTEITRENCAALGIPGYFDVVERSMSLQVINRKIRDSEYRALRDFVDDVELMVQNAKTFNAPAHPVHAFAEETRLLFARLLEGHKKDYALREE 366
            MSSATPAYRSRALEEEMDKFRSMIQNFASPVPTDYIHTLPPDFVQYAASVRAASGSDAGKSRPRLSLVDVARSMATTQAFGRPMEGFSEDQVRRAFSLGDWEGGSSSPSLRNTAKVPEPIYREIRPIHIRDGSVLSTDQGKGTEEKAAGKKTVEAAPAVPKLMAVQGSVPPTAKRPKLKAGFLKPADSSTALPEAPSSAESAPVLAPPASQPPAPAPSPLVLPPVPKVDVSKLTGQRRVSDLTQPEVLTIAEEVTKKLRAKRGKGMWRRQNPLDTEITRENCAALGIPGYFDVVERSMSLQVINRKIRDSEYRALRDFVDDVELMVQNAKTFNAPAHPVHAFAEETRLLFARLLEGHKKDYALREE
Sbjct:    1 MSSATPAYRSRALEEEMDKFRSMIQNFASPVPTDYIHTLPPDFVQYAASVRAASGSDAGKSRPRLSLVDVARSMATTQAFGRPMEGFSEDQVRRAFSLGDWEGGSSSPSLRNTAKVPEPIYREIRPIHIRDGSVLSTDQGKGTEEKAAGKKTVEAAPAVPKLMAVQGSVPPTAKRPKLKAGFLKPADSSTALPEAPSSAESAPVLAPPASQPPAPAPSPLVLPPVPKVDVSKLTGQRRVSDLTQPEVLTIAEEVTKKLRAKRGKGMWRRQNPLDTEITRENCAALGIPGYFDVVERSMSLQVINRKIRDSEYRALRDFVDDVELMVQNAKTFNAPAHPVHAFAEETRLLFARLLEGHKKDYALREE 366          
BLAST of EWM28679.1 vs. NCBI_GenBank
Match: gi|1210512572|dbj|GAX28429.1| (hypothetical protein FisN_4Hu380 [Fistulifera solaris])

HSP 1 Score: 80.4925 bits (197), Expect = 2.074e-13
Identity = 36/84 (42.86%), Postives = 57/84 (67.86%), Query Frame = 0
Query:  271 NPLDTEITRENCAALGIPGYFDVVERSMSLQVINRKIRDSEYRALRDFVDDVELMVQNAKTFNAP-AHPVHAFAEETRLLFARL 353
            NP    I RENCA++G P YFD++E+ M+L  I +K+   +Y +LR F +DVELM++NA T+N+  ++P    AEE + ++ +L
Sbjct:  219 NPFRVVIDRENCASVGAPDYFDIIEKPMNLTYIQQKVEGRKYESLRPFFEDVELMLRNAITYNSDVSNPYRIAAEEMKKMYIKL 302          
BLAST of EWM28679.1 vs. NCBI_GenBank
Match: gi|813132375|ref|XP_012197755.1| (hypothetical protein SPRG_19501 [Saprolegnia parasitica CBS 223.65] >gi|641537741|gb|KDO31585.1| hypothetical protein SPRG_19501 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 76.6406 bits (187), Expect = 3.757e-13
Identity = 43/106 (40.57%), Postives = 55/106 (51.89%), Query Frame = 0
Query:  264 KGM----WRRQ----NPLDTEITRENCAALGIPGYFDVVERSMSLQVINRKIRDSEYRALRDFVDDVELMVQNAKTFNAPAHPVHAFAEETRLLFARLLEGHKKDY 361
            KGM    WR      NP   + TRENC +LG+P YFD ++  M L  I  KI+  EY  L     DV L+V NAKTFN    PVH  A + + ++   L  +K  Y
Sbjct:   30 KGMTWKTWRINGKPGNPFIEKYTRENCKSLGVPNYFDFIQVPMDLTRIGEKIQRMEYVELSQLTQDVALLVNNAKTFNPAGTPVHQMALDFQKVYDDKLVQYKTIY 135          
BLAST of EWM28679.1 vs. NCBI_GenBank
Match: gi|695456001|ref|XP_009536849.1| (hypothetical protein PHYSODRAFT_348185 [Phytophthora sojae] >gi|348667458|gb|EGZ07283.1| hypothetical protein PHYSODRAFT_348185 [Phytophthora sojae])

HSP 1 Score: 79.337 bits (194), Expect = 5.735e-13
Identity = 36/91 (39.56%), Postives = 50/91 (54.95%), Query Frame = 0
Query:  271 NPLDTEITRENCAALGIPGYFDVVERSMSLQVINRKIRDSEYRALRDFVDDVELMVQNAKTFNAPAHPVHAFAEETRLLFARLLEGHKKDY 361
            NP   + T+ENC  LG+P YFD ++  M L  +  K+  +EY  +  F  D++LM  NAKTFN    PVH  A E   L+   L  +KK +
Sbjct:  197 NPFLQKFTKENCKRLGVPNYFDYIKNPMDLTRMKEKVERAEYSKIDQFSSDIKLMATNAKTFNRVGEPVHQMAIEIEQLYESKLPTYKKMF 287          
BLAST of EWM28679.1 vs. NCBI_GenBank
Match: gi|669147418|ref|XP_008609271.1| (hypothetical protein SDRG_05336 [Saprolegnia diclina VS20] >gi|530738867|gb|EQC37109.1| hypothetical protein SDRG_05336 [Saprolegnia diclina VS20])

HSP 1 Score: 79.337 bits (194), Expect = 6.555e-13
Identity = 43/106 (40.57%), Postives = 55/106 (51.89%), Query Frame = 0
Query:  264 KGM----WRRQ----NPLDTEITRENCAALGIPGYFDVVERSMSLQVINRKIRDSEYRALRDFVDDVELMVQNAKTFNAPAHPVHAFAEETRLLFARLLEGHKKDY 361
            KGM    WR      NP   + TRENC +LG+P YFD ++  M L  I  KI+  EY  L     DV L+V NAKTFN    PVH  A + + ++   L  +K  Y
Sbjct:  195 KGMTWKTWRINGKPGNPFIEKYTRENCKSLGVPNYFDFIQVPMDLTRIGEKIQRMEYVELSQLTQDVALLVNNAKTFNPAGTPVHQMALDFQKVYDDKLVQYKTIY 300          
BLAST of EWM28679.1 vs. NCBI_GenBank
Match: gi|675200439|ref|XP_008909104.1| (hypothetical protein PPTG_14283 [Phytophthora parasitica INRA-310] >gi|566019192|gb|ETI42103.1| hypothetical protein F443_12738 [Phytophthora parasitica P1569] >gi|567956492|gb|ETK82113.1| hypothetical protein L915_12458 [Phytophthora parasitica] >gi|567985158|gb|ETL35505.1| hypothetical protein L916_12364 [Phytophthora parasitica] >gi|568014560|gb|ETL88737.1| hypothetical protein L917_12210 [Phytophthora parasitica] >gi|568044816|gb|ETM41997.1| hypothetical protein L914_12289 [Phytophthora parasitica] >gi|568090753|gb|ETN05582.1| hypothetical protein PPTG_14283 [Phytophthora parasitica INRA-310] >gi|570322779|gb|ETO70727.1| hypothetical protein F444_12844 [Phytophthora parasitica P1976] >gi|570978911|gb|ETP40002.1| hypothetical protein F442_12643 [Phytophthora parasitica P10297])

HSP 1 Score: 78.5666 bits (192), Expect = 9.868e-13
Identity = 37/91 (40.66%), Postives = 50/91 (54.95%), Query Frame = 0
Query:  271 NPLDTEITRENCAALGIPGYFDVVERSMSLQVINRKIRDSEYRALRDFVDDVELMVQNAKTFNAPAHPVHAFAEETRLLFARLLEGHKKDY 361
            NP   + T+ENC  LG+P YFD V+  M L  +  K+  +EY  +  F  D++LM  NAKTFN    PVH  A E   L+   L  +KK +
Sbjct:  197 NPFLQKFTKENCKRLGVPNYFDYVKNPMDLTRMKEKVEHAEYTKIDQFSADIKLMAANAKTFNRVGEPVHQMAIEIEQLYESKLPVYKKMF 287          
BLAST of EWM28679.1 vs. NCBI_GenBank
Match: gi|570946590|gb|ETP11847.1| (hypothetical protein F441_12697 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 78.5666 bits (192), Expect = 1.025e-12
Identity = 37/91 (40.66%), Postives = 50/91 (54.95%), Query Frame = 0
Query:  271 NPLDTEITRENCAALGIPGYFDVVERSMSLQVINRKIRDSEYRALRDFVDDVELMVQNAKTFNAPAHPVHAFAEETRLLFARLLEGHKKDY 361
            NP   + T+ENC  LG+P YFD V+  M L  +  K+  +EY  +  F  D++LM  NAKTFN    PVH  A E   L+   L  +KK +
Sbjct:  197 NPFLQKFTKENCKRLGVPNYFDYVKNPMDLTRMKEKVEHAEYTKIDQFSADIKLMAANAKTFNRVGEPVHQMAIEIEQLYESKLPVYKKMF 287          
BLAST of EWM28679.1 vs. NCBI_GenBank
Match: gi|1173935168|gb|OQR86328.1| (hypothetical protein THRCLA_22971, partial [Thraustotheca clavata])

HSP 1 Score: 74.3294 bits (181), Expect = 1.735e-12
Identity = 38/87 (43.68%), Postives = 48/87 (55.17%), Query Frame = 0
Query:  271 NPLDTEITRENCAALGIPGYFDVVERSMSLQVINRKIRDSEYRALRDFVDDVELMVQNAKTFNAPAHPVHAFAEETRLLFARLLEGH 357
            NP   + TRENC ALG+P YFD +   M L  +  K++  EY  L  F  DV L+VQNAK FN    PVH  A E    + + LE +
Sbjct:   36 NPFIEKFTRENCKALGVPNYFDYISTPMDLTRMAEKLQHMEYVELSLFSQDVALIVQNAKFFNPIGTPVHEMALEFEKHYQQRLEYY 122          
BLAST of EWM28679.1 vs. NCBI_GenBank
Match: gi|301110450|ref|XP_002904305.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262096431|gb|EEY54483.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 77.411 bits (189), Expect = 2.107e-12
Identity = 36/91 (39.56%), Postives = 50/91 (54.95%), Query Frame = 0
Query:  271 NPLDTEITRENCAALGIPGYFDVVERSMSLQVINRKIRDSEYRALRDFVDDVELMVQNAKTFNAPAHPVHAFAEETRLLFARLLEGHKKDY 361
            NP   + T++NC  LG+P YFD V+  M L  +  K+  +EY  +  F  D++LM  NAKTFN    PVH  A E   L+   L  +KK +
Sbjct:  195 NPFIQKFTKDNCKRLGVPNYFDYVKSPMDLTRMKEKVEHAEYTKIDQFSTDIKLMAANAKTFNRVGEPVHQMAIEIEQLYESKLPVYKKMF 285          
BLAST of EWM28679.1 vs. NCBI_GenBank
Match: gi|953487237|emb|CEG49299.1| (Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Plasmopara halstedii])

HSP 1 Score: 76.6406 bits (187), Expect = 3.714e-12
Identity = 36/91 (39.56%), Postives = 50/91 (54.95%), Query Frame = 0
Query:  271 NPLDTEITRENCAALGIPGYFDVVERSMSLQVINRKIRDSEYRALRDFVDDVELMVQNAKTFNAPAHPVHAFAEETRLLFARLLEGHKKDY 361
            NP   + T++NC  LG+P YFD V+  M L  +  K+  +EY  +  F  D++LM  NAKTFN    PVH  A E   L+   L  +KK +
Sbjct:  192 NPFIQKFTKDNCKRLGVPNYFDYVKNPMDLTRMKEKVEHAEYTKIDQFTADIKLMAANAKTFNRVGEPVHQMAIEIEKLYESKLPVYKKMF 282          
The following BLAST results are available for this feature:
BLAST of EWM28679.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111102|gb|EWM28679.1|0.000e+0100.00Bromodomain protein [Nannochloropsis gaditana][more]
gi|1210512572|dbj|GAX28429.1|2.074e-1342.86hypothetical protein FisN_4Hu380 [Fistulifera sola... [more]
gi|813132375|ref|XP_012197755.1|3.757e-1340.57hypothetical protein SPRG_19501 [Saprolegnia paras... [more]
gi|695456001|ref|XP_009536849.1|5.735e-1339.56hypothetical protein PHYSODRAFT_348185 [Phytophtho... [more]
gi|669147418|ref|XP_008609271.1|6.555e-1340.57hypothetical protein SDRG_05336 [Saprolegnia dicli... [more]
gi|675200439|ref|XP_008909104.1|9.868e-1340.66hypothetical protein PPTG_14283 [Phytophthora para... [more]
gi|570946590|gb|ETP11847.1|1.025e-1240.66hypothetical protein F441_12697 [Phytophthora para... [more]
gi|1173935168|gb|OQR86328.1|1.735e-1243.68hypothetical protein THRCLA_22971, partial [Thraus... [more]
gi|301110450|ref|XP_002904305.1|2.107e-1239.56conserved hypothetical protein [Phytophthora infes... [more]
gi|953487237|emb|CEG49299.1|3.714e-1239.56Transcription initiation factor TFIID, subunit BDF... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1901rna1901Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications