EWM28679.1, cds1896 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28679.1 vs. NCBI_GenBank
Match: gi|585111102|gb|EWM28679.1| (Bromodomain protein [Nannochloropsis gaditana]) HSP 1 Score: 741.495 bits (1913), Expect = 0.000e+0 Identity = 366/366 (100.00%), Postives = 366/366 (100.00%), Query Frame = 0
Query: 1 MSSATPAYRSRALEEEMDKFRSMIQNFASPVPTDYIHTLPPDFVQYAASVRAASGSDAGKSRPRLSLVDVARSMATTQAFGRPMEGFSEDQVRRAFSLGDWEGGSSSPSLRNTAKVPEPIYREIRPIHIRDGSVLSTDQGKGTEEKAAGKKTVEAAPAVPKLMAVQGSVPPTAKRPKLKAGFLKPADSSTALPEAPSSAESAPVLAPPASQPPAPAPSPLVLPPVPKVDVSKLTGQRRVSDLTQPEVLTIAEEVTKKLRAKRGKGMWRRQNPLDTEITRENCAALGIPGYFDVVERSMSLQVINRKIRDSEYRALRDFVDDVELMVQNAKTFNAPAHPVHAFAEETRLLFARLLEGHKKDYALREE 366
MSSATPAYRSRALEEEMDKFRSMIQNFASPVPTDYIHTLPPDFVQYAASVRAASGSDAGKSRPRLSLVDVARSMATTQAFGRPMEGFSEDQVRRAFSLGDWEGGSSSPSLRNTAKVPEPIYREIRPIHIRDGSVLSTDQGKGTEEKAAGKKTVEAAPAVPKLMAVQGSVPPTAKRPKLKAGFLKPADSSTALPEAPSSAESAPVLAPPASQPPAPAPSPLVLPPVPKVDVSKLTGQRRVSDLTQPEVLTIAEEVTKKLRAKRGKGMWRRQNPLDTEITRENCAALGIPGYFDVVERSMSLQVINRKIRDSEYRALRDFVDDVELMVQNAKTFNAPAHPVHAFAEETRLLFARLLEGHKKDYALREE
Sbjct: 1 MSSATPAYRSRALEEEMDKFRSMIQNFASPVPTDYIHTLPPDFVQYAASVRAASGSDAGKSRPRLSLVDVARSMATTQAFGRPMEGFSEDQVRRAFSLGDWEGGSSSPSLRNTAKVPEPIYREIRPIHIRDGSVLSTDQGKGTEEKAAGKKTVEAAPAVPKLMAVQGSVPPTAKRPKLKAGFLKPADSSTALPEAPSSAESAPVLAPPASQPPAPAPSPLVLPPVPKVDVSKLTGQRRVSDLTQPEVLTIAEEVTKKLRAKRGKGMWRRQNPLDTEITRENCAALGIPGYFDVVERSMSLQVINRKIRDSEYRALRDFVDDVELMVQNAKTFNAPAHPVHAFAEETRLLFARLLEGHKKDYALREE 366
BLAST of EWM28679.1 vs. NCBI_GenBank
Match: gi|1210512572|dbj|GAX28429.1| (hypothetical protein FisN_4Hu380 [Fistulifera solaris]) HSP 1 Score: 80.4925 bits (197), Expect = 2.074e-13 Identity = 36/84 (42.86%), Postives = 57/84 (67.86%), Query Frame = 0
Query: 271 NPLDTEITRENCAALGIPGYFDVVERSMSLQVINRKIRDSEYRALRDFVDDVELMVQNAKTFNAP-AHPVHAFAEETRLLFARL 353
NP I RENCA++G P YFD++E+ M+L I +K+ +Y +LR F +DVELM++NA T+N+ ++P AEE + ++ +L
Sbjct: 219 NPFRVVIDRENCASVGAPDYFDIIEKPMNLTYIQQKVEGRKYESLRPFFEDVELMLRNAITYNSDVSNPYRIAAEEMKKMYIKL 302
BLAST of EWM28679.1 vs. NCBI_GenBank
Match: gi|813132375|ref|XP_012197755.1| (hypothetical protein SPRG_19501 [Saprolegnia parasitica CBS 223.65] >gi|641537741|gb|KDO31585.1| hypothetical protein SPRG_19501 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 76.6406 bits (187), Expect = 3.757e-13 Identity = 43/106 (40.57%), Postives = 55/106 (51.89%), Query Frame = 0
Query: 264 KGM----WRRQ----NPLDTEITRENCAALGIPGYFDVVERSMSLQVINRKIRDSEYRALRDFVDDVELMVQNAKTFNAPAHPVHAFAEETRLLFARLLEGHKKDY 361
KGM WR NP + TRENC +LG+P YFD ++ M L I KI+ EY L DV L+V NAKTFN PVH A + + ++ L +K Y
Sbjct: 30 KGMTWKTWRINGKPGNPFIEKYTRENCKSLGVPNYFDFIQVPMDLTRIGEKIQRMEYVELSQLTQDVALLVNNAKTFNPAGTPVHQMALDFQKVYDDKLVQYKTIY 135
BLAST of EWM28679.1 vs. NCBI_GenBank
Match: gi|695456001|ref|XP_009536849.1| (hypothetical protein PHYSODRAFT_348185 [Phytophthora sojae] >gi|348667458|gb|EGZ07283.1| hypothetical protein PHYSODRAFT_348185 [Phytophthora sojae]) HSP 1 Score: 79.337 bits (194), Expect = 5.735e-13 Identity = 36/91 (39.56%), Postives = 50/91 (54.95%), Query Frame = 0
Query: 271 NPLDTEITRENCAALGIPGYFDVVERSMSLQVINRKIRDSEYRALRDFVDDVELMVQNAKTFNAPAHPVHAFAEETRLLFARLLEGHKKDY 361
NP + T+ENC LG+P YFD ++ M L + K+ +EY + F D++LM NAKTFN PVH A E L+ L +KK +
Sbjct: 197 NPFLQKFTKENCKRLGVPNYFDYIKNPMDLTRMKEKVERAEYSKIDQFSSDIKLMATNAKTFNRVGEPVHQMAIEIEQLYESKLPTYKKMF 287
BLAST of EWM28679.1 vs. NCBI_GenBank
Match: gi|669147418|ref|XP_008609271.1| (hypothetical protein SDRG_05336 [Saprolegnia diclina VS20] >gi|530738867|gb|EQC37109.1| hypothetical protein SDRG_05336 [Saprolegnia diclina VS20]) HSP 1 Score: 79.337 bits (194), Expect = 6.555e-13 Identity = 43/106 (40.57%), Postives = 55/106 (51.89%), Query Frame = 0
Query: 264 KGM----WRRQ----NPLDTEITRENCAALGIPGYFDVVERSMSLQVINRKIRDSEYRALRDFVDDVELMVQNAKTFNAPAHPVHAFAEETRLLFARLLEGHKKDY 361
KGM WR NP + TRENC +LG+P YFD ++ M L I KI+ EY L DV L+V NAKTFN PVH A + + ++ L +K Y
Sbjct: 195 KGMTWKTWRINGKPGNPFIEKYTRENCKSLGVPNYFDFIQVPMDLTRIGEKIQRMEYVELSQLTQDVALLVNNAKTFNPAGTPVHQMALDFQKVYDDKLVQYKTIY 300
BLAST of EWM28679.1 vs. NCBI_GenBank
Match: gi|675200439|ref|XP_008909104.1| (hypothetical protein PPTG_14283 [Phytophthora parasitica INRA-310] >gi|566019192|gb|ETI42103.1| hypothetical protein F443_12738 [Phytophthora parasitica P1569] >gi|567956492|gb|ETK82113.1| hypothetical protein L915_12458 [Phytophthora parasitica] >gi|567985158|gb|ETL35505.1| hypothetical protein L916_12364 [Phytophthora parasitica] >gi|568014560|gb|ETL88737.1| hypothetical protein L917_12210 [Phytophthora parasitica] >gi|568044816|gb|ETM41997.1| hypothetical protein L914_12289 [Phytophthora parasitica] >gi|568090753|gb|ETN05582.1| hypothetical protein PPTG_14283 [Phytophthora parasitica INRA-310] >gi|570322779|gb|ETO70727.1| hypothetical protein F444_12844 [Phytophthora parasitica P1976] >gi|570978911|gb|ETP40002.1| hypothetical protein F442_12643 [Phytophthora parasitica P10297]) HSP 1 Score: 78.5666 bits (192), Expect = 9.868e-13 Identity = 37/91 (40.66%), Postives = 50/91 (54.95%), Query Frame = 0
Query: 271 NPLDTEITRENCAALGIPGYFDVVERSMSLQVINRKIRDSEYRALRDFVDDVELMVQNAKTFNAPAHPVHAFAEETRLLFARLLEGHKKDY 361
NP + T+ENC LG+P YFD V+ M L + K+ +EY + F D++LM NAKTFN PVH A E L+ L +KK +
Sbjct: 197 NPFLQKFTKENCKRLGVPNYFDYVKNPMDLTRMKEKVEHAEYTKIDQFSADIKLMAANAKTFNRVGEPVHQMAIEIEQLYESKLPVYKKMF 287
BLAST of EWM28679.1 vs. NCBI_GenBank
Match: gi|570946590|gb|ETP11847.1| (hypothetical protein F441_12697 [Phytophthora parasitica CJ01A1]) HSP 1 Score: 78.5666 bits (192), Expect = 1.025e-12 Identity = 37/91 (40.66%), Postives = 50/91 (54.95%), Query Frame = 0
Query: 271 NPLDTEITRENCAALGIPGYFDVVERSMSLQVINRKIRDSEYRALRDFVDDVELMVQNAKTFNAPAHPVHAFAEETRLLFARLLEGHKKDY 361
NP + T+ENC LG+P YFD V+ M L + K+ +EY + F D++LM NAKTFN PVH A E L+ L +KK +
Sbjct: 197 NPFLQKFTKENCKRLGVPNYFDYVKNPMDLTRMKEKVEHAEYTKIDQFSADIKLMAANAKTFNRVGEPVHQMAIEIEQLYESKLPVYKKMF 287
BLAST of EWM28679.1 vs. NCBI_GenBank
Match: gi|1173935168|gb|OQR86328.1| (hypothetical protein THRCLA_22971, partial [Thraustotheca clavata]) HSP 1 Score: 74.3294 bits (181), Expect = 1.735e-12 Identity = 38/87 (43.68%), Postives = 48/87 (55.17%), Query Frame = 0
Query: 271 NPLDTEITRENCAALGIPGYFDVVERSMSLQVINRKIRDSEYRALRDFVDDVELMVQNAKTFNAPAHPVHAFAEETRLLFARLLEGH 357
NP + TRENC ALG+P YFD + M L + K++ EY L F DV L+VQNAK FN PVH A E + + LE +
Sbjct: 36 NPFIEKFTRENCKALGVPNYFDYISTPMDLTRMAEKLQHMEYVELSLFSQDVALIVQNAKFFNPIGTPVHEMALEFEKHYQQRLEYY 122
BLAST of EWM28679.1 vs. NCBI_GenBank
Match: gi|301110450|ref|XP_002904305.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262096431|gb|EEY54483.1| conserved hypothetical protein [Phytophthora infestans T30-4]) HSP 1 Score: 77.411 bits (189), Expect = 2.107e-12 Identity = 36/91 (39.56%), Postives = 50/91 (54.95%), Query Frame = 0
Query: 271 NPLDTEITRENCAALGIPGYFDVVERSMSLQVINRKIRDSEYRALRDFVDDVELMVQNAKTFNAPAHPVHAFAEETRLLFARLLEGHKKDY 361
NP + T++NC LG+P YFD V+ M L + K+ +EY + F D++LM NAKTFN PVH A E L+ L +KK +
Sbjct: 195 NPFIQKFTKDNCKRLGVPNYFDYVKSPMDLTRMKEKVEHAEYTKIDQFSTDIKLMAANAKTFNRVGEPVHQMAIEIEQLYESKLPVYKKMF 285
BLAST of EWM28679.1 vs. NCBI_GenBank
Match: gi|953487237|emb|CEG49299.1| (Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Plasmopara halstedii]) HSP 1 Score: 76.6406 bits (187), Expect = 3.714e-12 Identity = 36/91 (39.56%), Postives = 50/91 (54.95%), Query Frame = 0
Query: 271 NPLDTEITRENCAALGIPGYFDVVERSMSLQVINRKIRDSEYRALRDFVDDVELMVQNAKTFNAPAHPVHAFAEETRLLFARLLEGHKKDY 361
NP + T++NC LG+P YFD V+ M L + K+ +EY + F D++LM NAKTFN PVH A E L+ L +KK +
Sbjct: 192 NPFIQKFTKDNCKRLGVPNYFDYVKNPMDLTRMKEKVEHAEYTKIDQFTADIKLMAANAKTFNRVGEPVHQMAIEIEKLYESKLPVYKKMF 282 The following BLAST results are available for this feature:
BLAST of EWM28679.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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