rna1896, rna1896 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1896
Unique Name	rna1896
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2527
Alignment location	CM002458.1:418484..420185 +

Link to JBrowse

Properties


Property Name	Value
Product	SOUL heme-binding protein
Orig transcript id	gnl\|cribi\|Naga_100002g125.4815.mrna
Orig protein id	gnl\|cribi\|Naga_100002g125.4815
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:418484..420185 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100002g125	gene1812	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1896	rna1896-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28696.1	cds1891	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:418484..420185+
coding sequence from alignment at CM002458.1:418484..420185+

mRNA sequence

>rna1896 ID=rna1896|Name=rna1896|organism=Nannochloropsis gaditana|type=mRNA|length=2527bp
TGTGATGGAAAATGCCCTCAACTTTGAAAACCTCGGATGGCTTCTTGTTC
CTACATCCAATTTAAAAGAAGCATCTACGACGACCTAACATGCCATGCAC
ATTGCAGATAGCCGGGAGATGGGATGGCGACTCCCTGGGCGCAGGAGGTG
CTGCTGGGGAACGCAAAGAAAAGACTCCAGCATGATTCTGTTGGGATTGC
GCTTTCTACTATTTTGTTCCGCCTGGGGAAACACCCATTTGCGCACAGCT
GGACCCCTCGACAAAGATCTTCAAGCGGCGCTTCCCCCTGCAACTGATTT
GCTTTCGATGCCGACGGGTTTGACGAAAGGCGAAAAATGTGCCAAGGCGA
TTGAGAAAGTTTTGCTCCCAATAGGCATGAATGCTACTTCAGTCCCCCCT
CGCCCTGATGAGGACGAGTCCCTTCCACGAGCATCTCCTCTTCCGATTGA
AACAATTTATACCAAAGAAGCCCTGCAGGACGAAATTATTTCACCATTGC
CGGGATATAAAGATGACACAGACTTTCGACAGTTTTCCGGCTACCTCCCG
ATCACAAGCAGCAAGAACATTTTTTATTGGTACGTGGAGGCCGTCGACAC
CCCCGAGAGCGCCCCGCTGGTATTCTGGACGAACGGAGGGCCCGGATGCA
GCGGTCTGTTCGGCTTCCTGGCCGAGCACGGTCCGTTTAGGCCGTTAGAG
GACGGGCAGACGCTGGTGCGTAACCCTTACAGCTGGAACCGTGTGGCCAA
CATGCTGTACGTGGAGCAACCCGTGACGGTGGGCTTCAGCTACTCGAGCG
AGCAGGTGGACAAGGCGGCCTTTGGGGACGACCAGTCGGCCCTGGACAAC
TTCCGCGTCATACAAAGCTTCCTGAGCCGTTACCCGCACCTTCGCTCGCA
TGAGTTGTACCTGTCAGGGGAGTCGTACGGGGGCCACTACCTTCCCTCGC
TCGCCCGCTTTATCCTCGACAAGAACGCCGCGCCAGATCCAACCTCCCCC
CCCCTCAACCTCCAGGGCTTCTTGGTCGGGAACCCCTCCACGGACCCCGT
CTTCCAGCTGCTCGGCCAGGTGGAGACCCTGGAGGCGCGCGGCCTCCTCC
CCCCGGCCCTGTCCCGCCGATGGGCCGACGAATGCGCCGCCACTCCCACG
GTCGTGCACCTGGGGTCCATGTCCTGCATGCAGCTCCAGCGAGAGATCCT
AGAGGCAGTGGAGGCCTTGGATTTGTACAGCATCTCTACCGCACCCTGCC
GCCTGGTCTTGGACGCGGAGGGCCTGGCGCTCGGGGAGAGGGTCAGGAAT
GCGACGGCCGCAGTGGCCTCCGCTGGGGCAAGTCAAGCCGTCAAGGAATT
TGTGCGAGGGCCCCAGGCTCGGAGAGAGGGTAAAGGTACTGTGGGCTCCT
GCCTGGGTGATCCAAAGCTGTGGACGGAGCTCGTCAGGGCCAAGGGAGCC
CTTTCTGCCGCCGCGGGGGCGGGGGAGCGAGAGCCTGCCGGTGGGGGCCC
GGTCGACGAGGCAGCCCCAGCGGGTCCTGCGGACGAGAAGGTCTCCCTGC
GGGCCGCGCCGAGCCCCGCCCGTGAGCGAGGCTCGGGCGCGCCCCAGGAT
CGCCGTCTCCGGCCCCTCTCCCCCTCACTTTCCGCGAAGAATGCCGAAGA
GCCGGCCGTGGGCCCCGGTCTCCCCACCGCCGCCCCCCTGGCTTACGACA
GCTGTCAAGCCGTGTATGGCGCCCGGTATTTGAACAGAGCGGATGTGAAG
GCAGCGCTCCATGCCTCAGAGGACGTGGCCTGGGAGGACTGCTCTTTCCT
GGTACTCGCCAATTTTCGGCGAAGCGACTGGTCCACATTGCTTGAGCCGA
CGTTCAAGAGCCTTGTTGGGGGCGAGAAGGGCGAAGGGGAGAGGACGGGG
CTGCGGGTGTTGCTGTACTCAGGAGACGACGACACGGTGTGCAGCAGTAG
GGGCACGGAGCTCTGGCTAGAGTCCTTGGCGTGGGGAGCGGAGAGAGCGT
GGGCTCCTTGGTTTGTAAGAGGGGCGGCAGCGGGCGGGAGAGAAGGGGGC
AGGGAAGCCCTCCCTGCGGGCATGATGACCAAGTACAAGAACGGCCTGGT
CTTCGCCACACTGGAGGGGGCGGGCCACGCCGTGCCCAGCTTTAAGCCCC
GCGAGGCCTTTTTCCTCTTTTCGGAGTACTTGTACGACCGCCTTTAAGAA
AGGAGAGCGTTGTTGTTGAGGCCTTGAAAGGACGGGATGTGGCTTCGAAG
GAGAGGGGAGGGCCAGGGAATGGGAGCAAAGGTCCTGAGAATTCTGCATT
GGTGGTGCTTTGTGAAGGGAAAAGCATGCGAGAAGGGTCGATGACGCTGG
GAAAGTGGTGAATGGAGGGAATGACGTCACGTTAAATTGGATCATGGGGG
TATGAGTGGAAGGGGGGTGTACACATGCAGGCAGAGATATGTGCAAAGTA
TGCAGATTAAGTACAGGGCCCGTGGTCGCGTCTCGTCGAGTAATAAGGAA
AATACTAAGGCCGACGCGAGCGTTGCA

protein sequence of rna1896

>rna1896-protein ID=rna1896-protein|Name=rna1896|organism=Nannochloropsis gaditana|type=polypeptide|length=552bp
MVIQPFVFLSIARADEAEYLSGQSPIEFCSSDRALQALRHLAAMPLLHDS
RTRPPICLKFGLIMCFTAIKWLGSASGFVAPINPDSHRARTSWTAATRLT
PLPSAASSTLRISLLKCASATIDKATAVSVDNEESKEGPLDLFASQFEQY
YNRALQGKPAQLKSLFATGATWSGVPLSEGNGDLQGVFDALDQGRAFMIE
PFFAVTGWEATDRGMKLEWQLSGTWPFPYRPRVRAAGTSFITLDKGTGKM
KQVEEQWHKPWWRVVLEQASPKGWDLWHLYLTPPAEKPLYRVVKKLSAVE
IREYYPRLVIELEQHDARPDVQYTEWAWILPDFAFTDELKLQGRAQYRET
YVATSPVESCVERVDWSPPLPPTGGQQPASSVAARRIRHHVPVPSHLGLD
PLSPRLPSPSAKDVDTEAGQAGRYVRQPRRFMAVRAFKGLTQTQEYGASR
RLLLEWCGKEGLRTVKNEKGKSRVWVQQHGMKAGFNMQGNFCLGIYEQAS
YSDWGEIAVEVERDPSWDSQEKGNRGSHKPCTIRTEKVRKVNMIEGIPCR
PP

mRNA from alignment at CM002458.1:418484..420185+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1896 ID=rna1896|Name=rna1896|organism=Nannochloropsis gaditana|type=mRNA|length=1702bp|location=Sequence derived from alignment at CM002458.1:418484..420185+ (Nannochloropsis gaditana)
ATGGTCATTCAGCCCTTTGTATTTCTCTCTATCGCTAGAGCAGACGAGGC
CGAATATTTAAGCGGACAGAGTCCCATCGAATTCTGTTCCTCGGATAGGG
CACTTCAAGCGCTGCGTCATTTAGCAGCCATGCCTCTCCTTCATGACAGT
AGGACGCGGCCACCGATCTGCTTAAAATTTGGATTGATTATGTGTTTTAC
TGCAATTAAGTGGCTGGGTTCGGCTTCAGGCTTCGTCGCCCCTATAAATC
CTGATTCGCATCGAGCTCGAACAAGTTGGACCGCTGCGACACGTTTGACA
CCACTCCCatctgctgcttcttccacACTAAGAATATCCCTATTAAAATG
CGCATCAGCGACCATCGATAAAGCAACAGCCGTATCCGTGGACAACGAAG
AATCTAAAGAAGGCCCCCTTGATCTTTTCGCTTCTCAATTTGAGCAATAC
TATAACCGGGCTCTTCAAGGGAAGCCCGCTCAACTAAAAAGTCTGTTTGC
TACCGGAGCTACCTGGTCGGGCGTGCCGTTATCAGAAGGCAATGGTGATC
TTCAAGGAGTGTTTGACGCGCTGGATCAAGGACGAGCCTTCATGATTGAG
CCTTTCTTCGCGGTGACTGGGTGGGAGGCCACCGACCGAGGCATGAAGTT
GGAGTGGCAGCTCTCGGGCACCTGGCCGTTCCCCTACCGGCCCCGGGTGC
GGGCCGCAGGCACGTCGTTCATCACTCTCGACAAGGGTACGGGAAAGATG
AAGCAAGTAGAGGAGCAGTGGCACAAGCCGTGGTGGCGGGTGGTGCTCGA
ACAAGCCTCGCCCAAAGGCTGGGACCTGTGGCACCTGTACTTGACCCCCC
CGGCAGAGAAACCGCTGTATCGAGTGGTGAAAAAGCTGTCAGCCGTAGAG
ATCCGCGAATACTACCCGCGTTTGGTCATCGAGCTGGAGCAGCATGACGC
CCGGCCCGACGTACAGTACACGGAGTGGGCCTGGATCTTGCCGGACTTCG
CCTTCACGGATGAGCTGAAGCTGCAGGGGCGGGCACAATACCGAGAAACG
TACGTGGCAACTTCACCCGTGGAGAGCTgcgtggagagggtggaCTGGTC
TCCCCCATTGCCGCCGACAGGGGGCCAGCAGCCCGCCTCGAGCGTGGCGG
CTCGTCGCATCCGGCACCACGTCCCCGTCCCATCCCATCTCGGCCTTGAt
ccgctctccccccgccttccgtcGCCATCGGCTAAGGACGTGGATACCGA
GGCTGGGCAGGCGGGAAGGTACGTGCGGCAGCCCAGGAGATTCATGGCTG
TGCGGGCATTTAAGGGGCTGACGCAAACACAGGAGTATGGGGCCTCGCGA
CGTTTGTTGTTGGAGTGGTGTGGCAAGGAGGGTTTGCGGACGGTCAAGAA
CGAGAAGGGGAAATCAAGGGTGTGGGTGCAGCAGCATGGCATGAAGGCAG
GGTTCAATATGCAGGGTAACTTCTGTCTCGGCATCTACGAGCAGGCGTCG
TACTCGGACTGGGGGGAGATCgccgtggaggtggagagggatcCGAGTTG
GGATAGTCAGGAAAAGGGTAATAGAGGGTAGGAGGGTTGTGTAGAAGTTC
AGCTTTCCATAGCTCAAAAGCAGCCACAAACCATGTACGATAAGGACCGA
AAAGGTTAGGAAAGTCAACATGATAGAAGGCATCCCGTGTCGGCCCCCTT
AA

Coding sequence (CDS) from alignment at CM002458.1:418484..420185+

>rna1896 ID=rna1896|Name=rna1896|organism=Nannochloropsis gaditana|type=CDS|length=3318bp|location=Sequence derived from alignment at CM002458.1:418484..420185+ (Nannochloropsis gaditana)
ATGGTCATTCAGCCCTTTGTATTTCTCTCTATCGCTAGAGCAGACGAGGC
CGAATATTTAAGCGGACAGAGTCCCATCGAATTCTGTTCCTCGGATAGGG
CACTTCAAGCGCTGCGTCATTTAGCAGCCATGCCTCTCCTTCATGACAGT
AGGACGCGGCCACCGATCTGCTTAAAATTTGGATTGATTATGTGTTTTAC
TGCAATTAAGTGGCTGGGTTCGGCTTCAGGCTTCGTCGCCCCTATAAATC
CTGATTCGCATCGAGCTCGAACAAGTTGGACCGCTGCGACACGTTTGACA
CCACTCCCatctgctgcttcttccacACTAAGAATATCCCTATTAAAATG
CGCATCAGCGACCATCGATAAAGCAACAGCCGTATCCGTGGACAACGAAG
AATCTAAAGAAGGCCCCCTTGATCTTTTCGCTTCTCAATTTGAGCAATAC
TATAACCGGGCTCTTCAAGGGAAGCCCGCTCAACTAAAAAGTCTGTTTGC
TACCGGAGCTACCTGGTCGGGCGTGCCGTTATCAGAAGGCAATGGTGATC
TTCAAGGAGTGTTTGACGCGCTGGATCAAGGACGAGCCTTCATGATTGAG
CCTTTCTTCGCGGTGACTGGGTGGGAGGCCACCGACCGAGGCATGAAGTT
GGAGTGGCAGCTCTCGGGCACCTGGCCGTTCCCCTACCGGCCCCGGGTGC
GGGCCGCAGGCACGTCGTTCATCACTCTCGACAAGGGTACGGGAAAGATG
AAGCAAGTAGAGGAGCAGTGGCACAAGCCGTGGTGGCGGGTGGTGCTCGA
ACAAGCCTCGCCCAAAGGCTGGGACCTGTGGCACCTGTACTTGACCCCCC
CGGCAGAGAAACCGCTGTATCGAGTGGTGAAAAAGCTGTCAGCCGTAGAG
ATCCGCGAATACTACCCGCGTTTGGTCATCGAGCTGGAGCAGCATGACGC
CCGGCCCGACGTACAGTACACGGAGTGGGCCTGGATCTTGCCGGACTTCG
CCTTCACGGATGAGCTGAAGCTGCAGGGGCGGGCACAATACCGAGAAACG
TACGTGGCAACTTCACCCGTGGAGAGCTgcgtggagagggtggaCTGGTC
TCCCCCATTGCCGCCGACAGGGGGCCAGCAGCCCGCCTCGAGCGTGGCGG
CTCGTCGCATCCGGCACCACGTCCCCGTCCCATCCCATCTCGGCCTTGAt
ccgctctccccccgccttccgtcGCCATCGGCTAAGGACGTGGATACCGA
GGCTGGGCAGGCGGGAAGGTACGTGCGGCAGCCCAGGAGATTCATGGCTG
TGCGGGCATTTAAGGGGCTGACGCAAACACAGGAGTATGGGGCCTCGCGA
CGTTTGTTGTTGGAGTGGTGTGGCAAGGAGGGTTTGCGGACGGTCAAGAA
CGAGAAGGGGAAATCAAGGGTGTGGGTGCAGCAGCATGGCATGAAGGCAG
GGTTCAATATGCAGGGTAACTTCTGTCTCGGCATCTACGAGCAGGCGTCG
TACTCGGACTGGGGGGAGATCgccgtggaggtggagagggatcCGAGTTG
GGATAGTCAGGAAAAGGGTAATAGAGGCAGCCACAAACCATGTACGATAA
GGACCGAAAAGGTTAGGAAAGTCAACATGATAGAAGGCATCCCGTGTCGG
CCCCCTTAAATGGTCATTCAGCCCTTTGTATTTCTCTCTATCGCTAGAGC
AGACGAGGCCGAATATTTAAGCGGACAGAGTCCCATCGAATTCTGTTCCT
CGGATAGGGCACTTCAAGCGCTGCGTCATTTAGCAGCCATGCCTCTCCTT
CATGACAGTAGGACGCGGCCACCGATCTGCTTAAAATTTGGATTGATTAT
GTGTTTTACTGCAATTAAGTGGCTGGGTTCGGCTTCAGGCTTCGTCGCCC
CTATAAATCCTGATTCGCATCGAGCTCGAACAAGTTGGACCGCTGCGACA
CGTTTGACACCACTCCCatctgctgcttcttccacACTAAGAATATCCCT
ATTAAAATGCGCATCAGCGACCATCGATAAAGCAACAGCCGTATCCGTGG
ACAACGAAGAATCTAAAGAAGGCCCCCTTGATCTTTTCGCTTCTCAATTT
GAGCAATACTATAACCGGGCTCTTCAAGGGAAGCCCGCTCAACTAAAAAG
TCTGTTTGCTACCGGAGCTACCTGGTCGGGCGTGCCGTTATCAGAAGGCA
ATGGTGATCTTCAAGGAGTGTTTGACGCGCTGGATCAAGGACGAGCCTTC
ATGATTGAGCCTTTCTTCGCGGTGACTGGGTGGGAGGCCACCGACCGAGG
CATGAAGTTGGAGTGGCAGCTCTCGGGCACCTGGCCGTTCCCCTACCGGC
CCCGGGTGCGGGCCGCAGGCACGTCGTTCATCACTCTCGACAAGGGTACG
GGAAAGATGAAGCAAGTAGAGGAGCAGTGGCACAAGCCGTGGTGGCGGGT
GGTGCTCGAACAAGCCTCGCCCAAAGGCTGGGACCTGTGGCACCTGTACT
TGACCCCCCCGGCAGAGAAACCGCTGTATCGAGTGGTGAAAAAGCTGTCA
GCCGTAGAGATCCGCGAATACTACCCGCGTTTGGTCATCGAGCTGGAGCA
GCATGACGCCCGGCCCGACGTACAGTACACGGAGTGGGCCTGGATCTTGC
CGGACTTCGCCTTCACGGATGAGCTGAAGCTGCAGGGGCGGGCACAATAC
CGAGAAACGTACGTGGCAACTTCACCCGTGGAGAGCTgcgtggagagggt
ggaCTGGTCTCCCCCATTGCCGCCGACAGGGGGCCAGCAGCCCGCCTCGA
GCGTGGCGGCTCGTCGCATCCGGCACCACGTCCCCGTCCCATCCCATCTC
GGCCTTGAtccgctctccccccgccttccgtcGCCATCGGCTAAGGACGT
GGATACCGAGGCTGGGCAGGCGGGAAGGTACGTGCGGCAGCCCAGGAGAT
TCATGGCTGTGCGGGCATTTAAGGGGCTGACGCAAACACAGGAGTATGGG
GCCTCGCGACGTTTGTTGTTGGAGTGGTGTGGCAAGGAGGGTTTGCGGAC
GGTCAAGAACGAGAAGGGGAAATCAAGGGTGTGGGTGCAGCAGCATGGCA
TGAAGGCAGGGTTCAATATGCAGGGTAACTTCTGTCTCGGCATCTACGAG
CAGGCGTCGTACTCGGACTGGGGGGAGATCgccgtggaggtggagaggga
tcCGAGTTGGGATAGTCAGGAAAAGGGTAATAGAGGCAGCCACAAACCAT
GTACGATAAGGACCGAAAAGGTTAGGAAAGTCAACATGATAGAAGGCATC
CCGTGTCGGCCCCCTTAA

Synonyms

Publications