EWM28696.1, cds1891 (CDS) Nannochloropsis gaditana

Overview
NameEWM28696.1
Unique Namecds1891
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:418484..420060 +
Alignment locationCM002458.1:420104..420185 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28696.1
ProductSOUL heme-binding protein
Orig transcript idgnl|cribi|Naga_100002g125.4815.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:418484..420060 +
CM002458.1supercontigCM002458.1:420104..420185 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR011256Reg_factor_effector_dom
IPR006917SOUL_haem-bd
Homology
BLAST of EWM28696.1 vs. NCBI_GenBank
Match: gi|585111119|gb|EWM28696.1| (SOUL heme-binding protein [Nannochloropsis gaditana])

HSP 1 Score: 1139.79 bits (2947), Expect = 0.000e+0
Identity = 552/552 (100.00%), Postives = 552/552 (100.00%), Query Frame = 0
Query:    1 MVIQPFVFLSIARADEAEYLSGQSPIEFCSSDRALQALRHLAAMPLLHDSRTRPPICLKFGLIMCFTAIKWLGSASGFVAPINPDSHRARTSWTAATRLTPLPSAASSTLRISLLKCASATIDKATAVSVDNEESKEGPLDLFASQFEQYYNRALQGKPAQLKSLFATGATWSGVPLSEGNGDLQGVFDALDQGRAFMIEPFFAVTGWEATDRGMKLEWQLSGTWPFPYRPRVRAAGTSFITLDKGTGKMKQVEEQWHKPWWRVVLEQASPKGWDLWHLYLTPPAEKPLYRVVKKLSAVEIREYYPRLVIELEQHDARPDVQYTEWAWILPDFAFTDELKLQGRAQYRETYVATSPVESCVERVDWSPPLPPTGGQQPASSVAARRIRHHVPVPSHLGLDPLSPRLPSPSAKDVDTEAGQAGRYVRQPRRFMAVRAFKGLTQTQEYGASRRLLLEWCGKEGLRTVKNEKGKSRVWVQQHGMKAGFNMQGNFCLGIYEQASYSDWGEIAVEVERDPSWDSQEKGNRGSHKPCTIRTEKVRKVNMIEGIPCRPP 552
            MVIQPFVFLSIARADEAEYLSGQSPIEFCSSDRALQALRHLAAMPLLHDSRTRPPICLKFGLIMCFTAIKWLGSASGFVAPINPDSHRARTSWTAATRLTPLPSAASSTLRISLLKCASATIDKATAVSVDNEESKEGPLDLFASQFEQYYNRALQGKPAQLKSLFATGATWSGVPLSEGNGDLQGVFDALDQGRAFMIEPFFAVTGWEATDRGMKLEWQLSGTWPFPYRPRVRAAGTSFITLDKGTGKMKQVEEQWHKPWWRVVLEQASPKGWDLWHLYLTPPAEKPLYRVVKKLSAVEIREYYPRLVIELEQHDARPDVQYTEWAWILPDFAFTDELKLQGRAQYRETYVATSPVESCVERVDWSPPLPPTGGQQPASSVAARRIRHHVPVPSHLGLDPLSPRLPSPSAKDVDTEAGQAGRYVRQPRRFMAVRAFKGLTQTQEYGASRRLLLEWCGKEGLRTVKNEKGKSRVWVQQHGMKAGFNMQGNFCLGIYEQASYSDWGEIAVEVERDPSWDSQEKGNRGSHKPCTIRTEKVRKVNMIEGIPCRPP
Sbjct:    1 MVIQPFVFLSIARADEAEYLSGQSPIEFCSSDRALQALRHLAAMPLLHDSRTRPPICLKFGLIMCFTAIKWLGSASGFVAPINPDSHRARTSWTAATRLTPLPSAASSTLRISLLKCASATIDKATAVSVDNEESKEGPLDLFASQFEQYYNRALQGKPAQLKSLFATGATWSGVPLSEGNGDLQGVFDALDQGRAFMIEPFFAVTGWEATDRGMKLEWQLSGTWPFPYRPRVRAAGTSFITLDKGTGKMKQVEEQWHKPWWRVVLEQASPKGWDLWHLYLTPPAEKPLYRVVKKLSAVEIREYYPRLVIELEQHDARPDVQYTEWAWILPDFAFTDELKLQGRAQYRETYVATSPVESCVERVDWSPPLPPTGGQQPASSVAARRIRHHVPVPSHLGLDPLSPRLPSPSAKDVDTEAGQAGRYVRQPRRFMAVRAFKGLTQTQEYGASRRLLLEWCGKEGLRTVKNEKGKSRVWVQQHGMKAGFNMQGNFCLGIYEQASYSDWGEIAVEVERDPSWDSQEKGNRGSHKPCTIRTEKVRKVNMIEGIPCRPP 552          
BLAST of EWM28696.1 vs. NCBI_GenBank
Match: gi|298708609|emb|CBJ26096.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 149.443 bits (376), Expect = 1.415e-36
Identity = 123/368 (33.42%), Postives = 171/368 (46.47%), Query Frame = 0
Query:  155 LQGKPAQLKSLFATGATWSGVPLSEGNGDLQGVFDALDQGRAFMIEPFFAVTGWEATDRGMKLEWQLSGTWPFPYRPRVRAAGTSFITLDKG-TGKMKQVEEQWHKPWWRVVLEQASPKGWDLWHLYLTPPAEKPLYRVVKKLSAVEIREYYPRLVIELEQHDARPDVQYTEWAWILPDFAFTDELKLQGRAQYRETYVATSPVESCVERVDWSPPLPP----TGGQQPAS-SVAARRIRHHVPVPSHLGLDPLSPRLPSPSAKDVDTEAGQAGRYVRQPRRFMAVRAFKGLTQTQEYGASRRLLLEWCGKEGLRTVKNEKGKSRVWVQQHGMKAGFNMQGNFCLGI-YEQASYSDWGEIAVEVERDP 515
            ++G P  L+ + A G  W G PL   N  L  V + L    + +  P  +V  + + D   +LEW  SGTWP P+ PR    G S  TL  G  GK+ ++ + W      + L+   P  WD+WH   +PPAEKP YRVVK+     IREY PR+  +    D   + +    A ILP F    E+K  GR    + Y  T P+E  ++    +   P      G  + AS S  A RI   VPVP+ +GLDP   +LP P ++    E  Q  R+VRQ  R +AV  F G+ Q  E    R  LL+    +G+   K   G+ R  +  +   A F   G   + I Y +  Y   G   V VE DP
Sbjct:    1 MRGDPGVLRQVLAPGVEWRG-PLGN-NAGLAKVEEELRGLGSLLNAPRLSV--FASKDGAKRLEWVASGTWPLPWLPRFIVKGAS--TLQTGPDGKVVKITDTWEGNPVTLGLKHLVPGFWDIWHQLGSPPAEKPPYRVVKRALGYVIREYAPRMATQPSLIDYS-NSREIRKALILPGFCHDGEIKTSGRKP--DEYYVTGPLEVAIQPFIATGNFPNGTWFNGTTREASQSRRANRITWTVPVPTAMGLDPT--KLPEPPSERERGED-QRSRHVRQGARRIAVTNFNGIPQDPEAAEVRAKLLKRLAADGVEPAKGADGRVRSGILMYNSVACFTKAGKLAMSILYHRPKYIGIGN-EVFVELDP 355          
BLAST of EWM28696.1 vs. NCBI_GenBank
Match: gi|873228747|emb|CEM14972.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 87.8113 bits (216), Expect = 1.459e-14
Identity = 111/447 (24.83%), Postives = 181/447 (40.49%), Query Frame = 0
Query:  144 ASQFEQYYNRALQGKPAQLKSLFATGATWS-----GVPLSEGNGDLQGVFDALDQGRAFMIEPFFAV---------TGWEATDRGMKLEWQLSGTWPFPY------RPRVRAAGTSFITLDKGTGKMKQVEEQWHKPWWRVVLEQASPKGWDLWHLYLT---PPAEKPLYRVVKKLSAVEIREYYPRLVIELE-----------QHDARPDVQYTEWAW-------------------------------ILPDFAFTDELKLQGRAQYRETYVATSPVESCVERVDWSPPLPPTGGQQPASSVAARRIRHHVPVPSHLGLDPLSPRLPSPSAKDVDTEA------GQAGRYVRQPRRFMAVRAFKGLT--QTQEYGASRRLLLEWCGKEGLRTVKNEKGKSRVWVQQHGMKAGFNMQGNFCLGIYEQASY---SDWGEIAVEVERD 514
            A +FE   N  L G+P  +  LF   A+W+       PLS        VF  L +  ++  +   A+         T   + ++ ++L +  SGT P  +       PRV    +S +T++K TG++ +VE+       R   EQ  P+ ++ WH+ L    P +E P +RV  +    ++ +  PR V+E +           Q D+ P   +T   W                               + P  ++  E+K     QY        P    V  +  S PL     QQ      ARR+   VP+PS  G D    ++PSP   DV+          +  RY  QPRR +AV A  G++  Q++   + +R L     K GL+  +N +GK   W++   +K GFN++G      Y   ++       E+ +E+E D
Sbjct:  204 AKEFENAVNFGLIGEPQYVDDLFDESASWTFPQFLPSPLSSR----AAVFSKLKELGSYWGDARVALLEVKTLEPETTTASDEQAIQLSYLFSGTSPLFFLGQYLSNPRVAIDVSSNVTVNKNTGRIVRVEDTSPYTPLRTFYEQIWPRIFEAWHIPLAKGGPRSEMPPHRVHHRRFVFDVVDVPPRAVLEGQFLDPTLGREGGQCDSLPRAFFTHVLWERGLRAEPFVNVAPAEVLLEPYTVERPWRVVMTPGRSYITEIKKDQEYQYN----VDEP--EIVANISLSTPL-----QQ-----DARRVTWVVPLPSAFGTD--IDQMPSP---DVNVRPLRRYLRDEKVRYSIQPRRRLAVTAAFGISDPQSRSLDSIKRGLFYAVQKRGLKVKRNREGKPLFWLRMWDVKVGFNLEGKCSRAWYPNDAWLAPFRRNELVLELEPD 625          
BLAST of EWM28696.1 vs. NCBI_GenBank
Match: gi|1072221915|gb|OEU06692.1| (hypothetical protein FRACYDRAFT_278343 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 75.0998 bits (183), Expect = 9.556e-11
Identity = 81/339 (23.89%), Postives = 140/339 (41.30%), Query Frame = 0
Query:  205 VTGWEATDRGMKLEWQLSGTWPFPYRPRVRAAGTSFITL----------------DKGTGKMKQVEEQW------HKPWWRVVLEQASPKGWDLWHLYLTPPAEKPLYRVVKKLSAVEIREYYPRLV-----IELEQHDARPDVQYTEWAWILPDFAFTDELKLQGRAQYRETYVATSPVESCVERVDWSPPLPPTGGQQPASSVAARRIRHHVPVPSHLGLDPLSPRLPSP-SAKDVDTEAGQAGRYVRQPRRFMAVRAFKGLTQTQEYGASRRLLLEWCGKEGLRTVKNEKGKSRVWVQQHGMKAGFNMQGNFCLGIYE-QASYSDWGEIAVEVERD 514
            V+G + +D   +L W+LS  WP  + PRV   GTS  TL                 K    +KQV+  +         +  ++  Q  P+ WD +H+ +TP AE      + K   + + +  PR+V     IE    + R        A ++P+ AFT  +K  G    +++YV T+PVE  + R                +     R+     +P       L+  LP P    + D E+     Y  Q  R +A   + G  Q  E    R+ L E   K+G +   ++ GK + +  Q+ +KA + +   F + +Y+ +  ++   E+ +E+  D
Sbjct:  153 VSGKKISDDVFELSWELSLIWPTFWAPRVFLVGTSTCTLADSSALRSAIEEGTTTSKAVSVIKQVDSVFGIDTGNSLSFVSMLGSQIVPRFWDWYHIGMTPTAELLPRHTLAKKGGISVYQIPPRMVTAPTIIETGTRENRH-------AEMIPNHAFTCVIKTMGPN--KKSYVPTTPVEVQIGR---------------KNDAEDDRLLIKWAIPLATQFQALNDNLPLPGDNSEDDEESFPTCDYEWQSLRQVATIKYGGYAQDPEISDIRKRLYEQVLKDGWKPKLDQNGKPQFFFWQNNVKACY-IDDGFGMSVYDWRPKFAKSNEVGIELVAD 466          
BLAST of EWM28696.1 vs. NCBI_GenBank
Match: gi|1210520676|dbj|GAX20525.1| (hypothetical protein FisN_24Hh222 [Fistulifera solaris])

HSP 1 Score: 65.855 bits (159), Expect = 8.266e-8
Identity = 60/220 (27.27%), Postives = 104/220 (47.27%), Query Frame = 0
Query:  144 ASQFEQYYNRAL-QGKPAQLKSL-FATGATW-SGVPLSEGNGDLQGVFDALDQGRAFMIEPFFAVTGWEATDRG-MKLEWQLSGTWPFPYRPRVRAAGTSFITLDKGTGKMKQVEEQWHKPWWRVVLEQASPKGWDLWHLYLTPPAE-KPLYRVVKKLSAVEIREYYPRLVIELEQHDARPDVQYTEWAWILPDFAFTDELKLQGRAQYRETYVATSPVE 358
            A   +Q  NR L Q + +Q+    +     W +  P+ E N  ++     L    AF      A+T  ++ +   +++ W+++  WP  + PR+   G S +++D G    +QV+    K     V +Q  P+ WD++H+ +TP AE  P +     L +  + E   RL ++  Q D    +  T  A ++P+ AFT  +K  G  + R  YV T+PVE
Sbjct:  106 ARSLQQQINRVLYQEEQSQVTEFTYKPSMEWETSFPVKEANPLME-----LKNALAFYEHVDVAITSAKSINSNTIEVRWEIAVAWPIFWEPRLLFTGQSILSMD-GNTITRQVDTLDEKDLLFSVAKQIFPRFWDIYHIGMTPSAELSPRFPQFGLLRSYNLYELPARLYLQPTQLDTGKRIDNT--AAMIPNHAFTCIIKTIGPQKQR--YVPTTPVE 315          
The following BLAST results are available for this feature:
BLAST of EWM28696.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 5
Match NameE-valueIdentityDescription
gi|585111119|gb|EWM28696.1|0.000e+0100.00SOUL heme-binding protein [Nannochloropsis gaditan... [more]
gi|298708609|emb|CBJ26096.1|1.415e-3633.42conserved unknown protein [Ectocarpus siliculosus][more]
gi|873228747|emb|CEM14972.1|1.459e-1424.83unnamed protein product [Vitrella brassicaformis C... [more]
gi|1072221915|gb|OEU06692.1|9.556e-1123.89hypothetical protein FRACYDRAFT_278343 [Fragilario... [more]
gi|1210520676|dbj|GAX20525.1|8.266e-827.27hypothetical protein FisN_24Hh222 [Fistulifera sol... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1896rna1896Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications