rna1894, rna1894 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1894
Unique Name	rna1894
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2993
Alignment location	CM002458.1:413195..415726 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100002g128.4898.mrna
Orig protein id	gnl\|cribi\|Naga_100002g128.4898
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:413195..415726 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100002g128	gene1810	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1894	rna1894-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28779.1	cds1889	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:413195..415726+
coding sequence from alignment at CM002458.1:413195..415726+

mRNA sequence

>rna1894 ID=rna1894|Name=rna1894|organism=Nannochloropsis gaditana|type=mRNA|length=2993bp
TCGGCGTGCTTCCACCGGCGGCAATTTGGTGCAGGTCGGGGTGAGTGTGA
TGTGTGTGCATGATTTTTCATAGGGCGTGGTGGTGTTTGGGTGTCTAAGG
ACATATAATCGGTTTTGCACTTACGGCGGGTCACGCCCTCTTCTCGAGCC
TCTGACTCGTGACGGCAACACTTAAAAGGCGTGTTCCCCTCGGCGACTTG
TCTTGGCACTTGGCAAGCCCGAAGTGTTGACAAGCATGCATGCATCATGA
TGCCCGTCACCAGGCGTGCATGGACCAACTTCTGTGTTGTTTGCGTGTGA
GATAAATGCCCACCTTGAAGTCCGCCCGTCATGCGCGCTCGGGGGGCGGT
GATTGGGCCCTTGTCTGCTCCCACCGCGCACTCCGCACACTCCTCAATCT
TTCCAGCCGCCATTCTCACGCTAGAATAGTGTAATGTACCTTACGACTCT
AATGTTCGTGCTTACGTTCATCCCATAAAGTCGGTGGCGGTCCAATAAAA
GCGCGCTAGTGGGGCCACGAGCCTGCCCAACTCGGTCGCAGGGTGAAGGA
AATCTGATTCCCAGGCGTGAATATGTCTCAGTGGGGTGGCTGCCTGCGAC
GGCTTCGCGACTGTCTACGTCGCCTTCTTTTGGAAGAAGAAGACGAGGAG
GCCGTAGGTCTGATGGAAAATGACAAGCTCGAACTAGCCGTATCCCGAGG
TCGCCACAAGCAACACCGCAACGGCGATGGGCCCTCCGGGGCCGGCAGTG
GCAACTCTGCGACTTCAACCACGTCTTCTAAGACCCGTCCAGCCCATACA
AAGGTGCTCCGAGCGAAAGACGCCTCATACAGCGAGGGTATTCTGCAGGA
CTTTCGACGCGAAGAGATCCCGGCTGAGCTGGCCAAATTTTATGACATGC
AAGACATAATAGGCATTGGCACCACGAGCAAGGTGTATAGGTGCAAACGC
CGGGCCCGACAGACCGTGTTCGCCTGCAAGGTCATCGACAAACGGAAGCT
CAACATTGAAATCGACAACAAGGACATGCTTCTCGAGCAGCTCCGGAAAG
AGATCGAGATCCTCCAGCATTTGCAGCACCCGAACATTGTCCGCTTCGAG
GACGTGATCGAGACGGCGGACAAAATTTTCGTGGTCATGGAGCTCATCCA
GGGCGGGGAGCTCTTCGAATTCCTGCTAGACAGAGGGCCGCTCGCAGAGG
ATGTGGCGCTGCACGTCTTTCGGCAGGTGATGGGCGCCATCACCTACATG
CACGACAGGGGCGTGGTTCATCGGGACCTGAAGGCGGAGAATCTCCTCCT
GGTCGACCCCGCGGCCGAGTACCCGACCGTGAAACTGATCGACTTCGGCT
TCTCCACGATACTCAGACACACGCTGACGGGATCCTTTCTGGGCACAGGA
GGCTACCTGGCCCCGGAAATTCGGCAGCAGCGCATGTACTCTGAGAGTGT
GGATATATGGGCCGCAGGGGTGCTTTTGTACCTGTTGCTCTCTTGCCGGC
TGCCCTTCAACGCAGACGTGGAGGTTTTGCCAAGCAACAGAGCGCAGGTG
GCTCGAAAATTCGAGCTATCCTTCCCCGAGGCGGTCTGGAAGGGGAAGAG
CGACAGTGTGAAGGACTTGTTGAGGAGGATGCTCCTGACCGATCCGCTCA
AGAGGTTTAGCGCCCACCAGGTGATCCGCCATCCCTGGACCCTCTATGGA
GCGGCGGCAGACGCGCGTGGTCCGAAGGGCGTGCGGGAGAAGGCACAAAA
GGATTCCGAAAAGGCCAACACTATTCCTCCCCTTCCGACCAAGGCGGCAG
CATCCAGCAGGAATGCCCTGGGTGGTAGAGGAGGCCAGGGTGCCTCTTTC
GAGAACCCGCAAGAAAGTAGCGGATATGTTAGCAAGACGTCGAGCACTCA
GGCCAGCACCATCAGTGGCAGGGGCAGGGACCCCGCGCGCACTCCGGGGC
CACTCACTGACAAGACGGGTCCCTCTCTCGTTGCTCTGCCGCCCGGGGCT
CCCGTCCGGCAGTCCAGGCAACTTCCTCCTTCGGGGAAGGAGAGCAGGTT
CCAGGCCCTCTCCTCACCGTCCACTACTCCCACCTACGGGTCGTCCCCTT
CCTCCACCACGTCCTCGCCATCGTCCTCCATGGCTGCCGCCCTTGTGCTC
AACGCGGACGGGAACATTCGCCACGTCCGCTCCTCTGCCAACCTGGACCG
CCTGCCCACCTCTGGGGCTGCCACGCTTTCTCGGACCCCCCCCACCGTCA
AGCCCTCCCCCCTTCGCCCGGCCATCACCGTGGGCGGCGGCAGTCAGGCA
GGTCACGCCAAGCAAAGGGGCAACGGGCCTCAGAAACCGGTGCTGGTCTC
TTACTTCCCGCAGACGCTGCACAACTCGGCGGCGGGAGACTTGAGTACGA
CGAGTAATCTGTCCTTGAAATTCTCCATGCAAGACAAGAAGCCCCGGGCG
ATGGACGGCGAGCGCAGAGTGCCAGAGGGAATCCCAGTCGGGTGTTCAGG
GGGCTCTAACGAGGGCATGGCGACGAGGGAGAGGAAGGGTGCCGTGAGGA
TTGTGGGCGTGGGCAGGTGACAAGGCGGAGTGGTATGAAAGACAGGAATT
GAAATAAATTGCACGAAGCCAAGCGCGTTGACCGGGGACGGCTTGTCGGG
TAAAGGAACGTGCAGAGCTTCTAGAAGACACGGTAGGGTCGTGACCCAGA
GAAGCCTTCTGTGTCATAAATGGGCGGGGAGCATCAGACGTGCTTAGTTT
CTTTGCACTCGTCTCTTTGGCGGATCGCCGCTGGCAGCTTCCAGCTAAGA
CTGATGTATGTTGTCTGAATATGTGGTGGGTAGATAAGGTAGTGTACAGT
CCCACCCTCCGGGTGTGTAGATAGGGAACACAGCTATCGTCTGCGGTTCA
TGGATGATGAGTTCCACAGGCAAAAATTGGCGCGACCAAGTCTTCGAAAG
AAAGAATTATTGAAATGAAAGGCTCATCTTCACGGTCCACACC

protein sequence of rna1894

>rna1894-protein ID=rna1894-protein|Name=rna1894|organism=Nannochloropsis gaditana|type=polypeptide|length=288bp
MGRARADGLGDADPEQSPRAGGGAGLRDAGRPGGGQDVLALLSRLFLREV
GLEQASSVSEGSGERHGRLQAKLLHALSCTVRGHADAEARFVQSYAPEVF
RAGLQPSRQERVQVKALFFLQALLGADDATPARGEALLPLLPLVVPCLEN
NENVDLRHTAACVVTGLANLTGGPAVIFGKDGGEALRRAMERRQGLLGSG
SDEAMGEELLFWSALARGGTGRMSWRDGEGIGEEGEGVEGAGGGGGRVLQ
SLQSGASESATADQTNEAPAPVLLLGQPQYLSGASSAP

mRNA from alignment at CM002458.1:413195..415726+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1894 ID=rna1894|Name=rna1894|organism=Nannochloropsis gaditana|type=mRNA|length=2532bp|location=Sequence derived from alignment at CM002458.1:413195..415726+ (Nannochloropsis gaditana)
TTGTCAACACTTCGGGCTTGCCAAGTGCCAAGACAAGTCGCCGAGGGGAA
CACGCCTTTTAAGTGTTGCCGTCACGAGTCAGAGGCTCGAGAAGAGGGCG
TGACCCGCCGTAAGTGCAAAACCGATTATATGTCCTTAGACACCCAAACA
CCACCACGCCCTATGAAAAATCATGCACACACATCACACTCACCCCGACC
TGCACCAAATTGCCGCCGGTGGAAGCACGCCGAGTGAACGAGTCAGCAGG
CGAGACGTGCCTTGTGTGCGCCACTTTTGGGCCTTTTTTTGTTCTGGAGT
GGAGCCGAGTGGAGGGCGTGAAGCacggcaagggagggagcatgcCGGGC
CGCCACGGACTGCTTTACGATCGAGAAGCAGAGGTCAAGCAGGGTCTCGG
CACCTGCGCGTGTTACAGGCGTGTGATATGTACGTGTTTGGTCGGTTGTT
GGCCTCGTCCTAAGAAATTTGTCAGTGAGGGGCGTCTTGGTTACCGCTCC
GACAGTCTAGAAGCCGAATTATGTTCCTTGACCTGGCTTCACCGCGCCTG
TCAGGGGCAAATTACGCGGGGCATGAGGTACCTCTTAGCGTAAAAAGAGG
CGGACATGTTTGAAATTGCGAAATTAAGGCCTCCCAGGGTAGACTCAGTC
AAAGTGGATTCTGTACCATCTTCTCACCTTACTGCTTGTCGTCTTCCATC
GCTGTATCTCCCCTACGTTTCTACTGTTTTTTACGCTTCTCACAGGACCA
ATGAGTGCCAAGGGGACCACAGCATCTGCCTTAGGACCGGATGCTTGGAA
AGATTTGCTTAACTGGTATGTTTATGTGATTGGTGGTTCAATCCAGAATG
CTAAACTGGCCATTTAGGGGGGGGCATTCAAGAGCTTACCCCCCATTCAC
GGGCTTGTACCGTGAGGTAGCTCTTTCCAGCTGAATTGGCACCGATGTGG
TAACCTTTATCATGAGATATATTCGTCTGTCTTGAGAATCCAAGCTGGGT
GGAACGCTTGGGTCCTTGTACCCTGCGGCGCGGCATACTCCTTGAGCTCA
AGAGACTAGAACGTTGAGAAGCGCCAGTCCACGGGCACGATTTGGCGCCT
TTGAAGCATGCAGGACGGCCAAGGGGCTTGGCTGGAAATAATAGACTGTT
GTACTGGCCGTTTTTGATGGTCATCGGCCAGCGCCTCGAGGTCTTCTCAC
GTCGTGTCGCGCCCCCCCTCACAGGACACTGAAGCAGCAAGGCCCCACTG
CTGAGAGCGCCGGCGGGGCGGCTCCAGGGCCCATATCGCATGACAAGAAA
GAATGGCTAGAGCGGGTCATGGAAGGGACGTTCGTGGACATGAGCAAGCG
GCTGCGAGAGCGTTTGGGCTTGCTGGAGGAGCTTctgcagggggagagga
gtgAGCCGCGCCCTAGACCAGAGGCAAACGTGCCGGCCGCCTCGGACCAA
GAGCCGAGCGCGGTGGAGCGAGGACAAGCGCtctgggaggaaatggagga
agacgtggaaaaTCTGGATTACGCGCTCATGTTTTGCCAGGTGGGGGGCC
TTCAAGTGCTCTTCCAGTACCTgctgcgggcggcggcgggggagcaggac
gccgaggcccggacatgggccgtgCGCGTGCTGACGGTCTTGGCGACGCT
GACCCAGAACAATCCCCCCGTGCAggcggaggtgctggcctTCGCGATGC
AGGacgcccggggggggggcaagacgTGCTGGCGCTCCTGTctcgtctct
ttctccgcgAGGTCGGCCTGGAACAGGCGAGCTCTGTGTCCGAGGGGTCT
GGGGAGAGGCATGGGCGTCTCCAGGCGAAGCTTCTGCACGCCTTATCCTG
CACTGTCCGGGGCCACGCCGATGCCGAAGCCCGTTTTGTGCAGTCCTACG
CCCCGGAGGTCTTCCGAGCcggcctccagccctcccgaCAGGAGCGCGTT
CAGGTCAAggcgctcttcttcctgcaaGCCCTTCTCGGCGCCGACGACGC
CACGCCTGCACGAGGAGAGGCCTTGCTGCCCCTGCTCCCCTTGGTGGTTC
CGTGCTTGGAAAACAACGAGAACGTGGACCTGAGACACACGGCCGCCTGT
GTGGTGACGGGGTTGGCGAACCTGACAGGGGGGCCCGCGGTGATTTTCGG
CaaagatgggggggaagcattgcggagggcgatggagagaCGTCAAGGAT
TGCTTGGATCGGGGTCGGACGAGGCGATGGGAGAGGAGTTGCTGTTTTGG
AGCGCTTTGGCGAGAGGGGGCACTGGAAGAATGTcgtggagggacgggga
gggaataggtgaggaaggtgagggagtggagggggcgggaggaggaggag
ggcgtgttCTGCAATCTCTGCAATCAGGAGCATCGGAAAGCGCGACGGCC
GACCAGACAAATGAGGCGCCGGCGCCTGTTTTGCTCCTGGGCCAACCGCA
ATACCTGAGCGGAGCGAGCAGTGCGCCGTAGGCAGGAAGCAAATAAAAAA
TACGTGCTGCTTTAAAATTTGAACCTGTGCAA

Coding sequence (CDS) from alignment at CM002458.1:413195..415726+

>rna1894 ID=rna1894|Name=rna1894|organism=Nannochloropsis gaditana|type=CDS|length=867bp|location=Sequence derived from alignment at CM002458.1:413195..415726+ (Nannochloropsis gaditana)
atgggccgtgCGCGTGCTGACGGTCTTGGCGACGCTGACCCAGAACAATC
CCCCCGTGCAggcggaggtgctggcctTCGCGATGCAGGacgcccggggg
gggggcaagacgTGCTGGCGCTCCTGTctcgtctctttctccgcgAGGTC
GGCCTGGAACAGGCGAGCTCTGTGTCCGAGGGGTCTGGGGAGAGGCATGG
GCGTCTCCAGGCGAAGCTTCTGCACGCCTTATCCTGCACTGTCCGGGGCC
ACGCCGATGCCGAAGCCCGTTTTGTGCAGTCCTACGCCCCGGAGGTCTTC
CGAGCcggcctccagccctcccgaCAGGAGCGCGTTCAGGTCAAggcgct
cttcttcctgcaaGCCCTTCTCGGCGCCGACGACGCCACGCCTGCACGAG
GAGAGGCCTTGCTGCCCCTGCTCCCCTTGGTGGTTCCGTGCTTGGAAAAC
AACGAGAACGTGGACCTGAGACACACGGCCGCCTGTGTGGTGACGGGGTT
GGCGAACCTGACAGGGGGGCCCGCGGTGATTTTCGGCaaagatggggggg
aagcattgcggagggcgatggagagaCGTCAAGGATTGCTTGGATCGGGG
TCGGACGAGGCGATGGGAGAGGAGTTGCTGTTTTGGAGCGCTTTGGCGAG
AGGGGGCACTGGAAGAATGTcgtggagggacggggagggaataggtgagg
aaggtgagggagtggagggggcgggaggaggaggagggcgtgttCTGCAA
TCTCTGCAATCAGGAGCATCGGAAAGCGCGACGGCCGACCAGACAAATGA
GGCGCCGGCGCCTGTTTTGCTCCTGGGCCAACCGCAATACCTGAGCGGAG
CGAGCAGTGCGCCGTAG

Synonyms

Publications