EWM28779.1, cds1889 (CDS) Nannochloropsis gaditana

Overview
NameEWM28779.1
Unique Namecds1889
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:414809..415675 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28779.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100002g128.4898.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:414809..415675 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
Vocabulary: INTERPRO
TermDefinition
IPR016024ARM-type_fold
Homology
[Close]
BLAST of EWM28779.1 vs. NCBI_GenBank
Match: gi|585111202|gb|EWM28779.1| (hypothetical protein Naga_100002g128 [Nannochloropsis gaditana])

HSP 1 Score: 558.91 bits (1439), Expect = 0.000e+0
Identity = 288/288 (100.00%), Postives = 288/288 (100.00%), Query Frame = 0 
Query:    1 MGRARADGLGDADPEQSPRAGGGAGLRDAGRPGGGQDVLALLSRLFLREVGLEQASSVSEGSGERHGRLQAKLLHALSCTVRGHADAEARFVQSYAPEVFRAGLQPSRQERVQVKALFFLQALLGADDATPARGEALLPLLPLVVPCLENNENVDLRHTAACVVTGLANLTGGPAVIFGKDGGEALRRAMERRQGLLGSGSDEAMGEELLFWSALARGGTGRMSWRDGEGIGEEGEGVEGAGGGGGRVLQSLQSGASESATADQTNEAPAPVLLLGQPQYLSGASSAP 288
            MGRARADGLGDADPEQSPRAGGGAGLRDAGRPGGGQDVLALLSRLFLREVGLEQASSVSEGSGERHGRLQAKLLHALSCTVRGHADAEARFVQSYAPEVFRAGLQPSRQERVQVKALFFLQALLGADDATPARGEALLPLLPLVVPCLENNENVDLRHTAACVVTGLANLTGGPAVIFGKDGGEALRRAMERRQGLLGSGSDEAMGEELLFWSALARGGTGRMSWRDGEGIGEEGEGVEGAGGGGGRVLQSLQSGASESATADQTNEAPAPVLLLGQPQYLSGASSAP
Sbjct:    1 MGRARADGLGDADPEQSPRAGGGAGLRDAGRPGGGQDVLALLSRLFLREVGLEQASSVSEGSGERHGRLQAKLLHALSCTVRGHADAEARFVQSYAPEVFRAGLQPSRQERVQVKALFFLQALLGADDATPARGEALLPLLPLVVPCLENNENVDLRHTAACVVTGLANLTGGPAVIFGKDGGEALRRAMERRQGLLGSGSDEAMGEELLFWSALARGGTGRMSWRDGEGIGEEGEGVEGAGGGGGRVLQSLQSGASESATADQTNEAPAPVLLLGQPQYLSGASSAP 288
[Close]
BLAST of EWM28779.1 vs. NCBI_GenBank
Match: gi|553193423|ref|XP_005855772.1| (hsp70-interacting protein, partial [Nannochloropsis gaditana CCMP526] >gi|422293292|gb|EKU20592.1| hsp70-interacting protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 392.119 bits (1006), Expect = 8.545e-134
Identity = 196/198 (98.99%), Postives = 198/198 (100.00%), Query Frame = 0 
Query:   33 GGGQDVLALLSRLFLREVGLEQASSVSEGSGERHGRLQAKLLHALSCTVRGHADAEARFVQSYAPEVFRAGLQPSRQERVQVKALFFLQALLGADDATPARGEALLPLLPLVVPCLENNENVDLRHTAACVVTGLANLTGGPAVIFGKDGGEALRRAMERRQGLLGSGSDEAMGEELLFWSALARGGTGRMSWRDGEG 230
            GGG+DVLALLSRLFLREVGLE+ASSVSEGSGERHGRLQAKLLHALSCTVRGHADAEARFVQSYAPEVFRAGLQPSRQERVQVKALFFLQALLGADDATPARGEALLPLLPLVVPCLENNENVDLRHTAACVVTGLANLTGGPAVIFGKDGGEALRRAMERRQGLLGSGSDEAMGEELLFWSALARGGTGRMSWRDGEG
Sbjct:  163 GGGRDVLALLSRLFLREVGLEEASSVSEGSGERHGRLQAKLLHALSCTVRGHADAEARFVQSYAPEVFRAGLQPSRQERVQVKALFFLQALLGADDATPARGEALLPLLPLVVPCLENNENVDLRHTAACVVTGLANLTGGPAVIFGKDGGEALRRAMERRQGLLGSGSDEAMGEELLFWSALARGGTGRMSWRDGEG 360
The following BLAST results are available for this feature:
BLAST of EWM28779.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585111202|gb|EWM28779.1|0.000e+0100.00hypothetical protein Naga_100002g128 [Nannochlorop... [more]
gi|553193423|ref|XP_005855772.1|8.545e-13498.99hsp70-interacting protein, partial [Nannochloropsi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1894rna1894Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications