rna1892, rna1892 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1892
Unique Name	rna1892
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3774
Alignment location	CM002458.1:408468..409813 +

Link to JBrowse

Properties


Property Name	Value
Product	adenylate kinase 3 alpha like 1 variant 1
Orig transcript id	gnl\|cribi\|Naga_100002g130.4913.mrna
Orig protein id	gnl\|cribi\|Naga_100002g130.4913
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:408468..409813 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100002g130	gene1808	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1892	rna1892-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28794.1	cds1887	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:408468..409813+
coding sequence from alignment at CM002458.1:408468..409813+

mRNA sequence

>rna1892 ID=rna1892|Name=rna1892|organism=Nannochloropsis gaditana|type=mRNA|length=3774bp
TCACGATATCACTGTGCCTTATCATTGTCTTCGCGTATACTCGTCGTTTT
TGTGGTCACACGCAGGCCATGTTTTAGCAAGTTGAGGAGGAGACAAGCGA
TTCACTGCCTCGCTCTCCCACTTCACTACTCAGAGTACAACCCCCTAAAC
CTCTTTTGGACCCAGAAATGTCCTTGGATGGGCCAAGCATAGATCTCTTT
TGAGAAAATCGCGAGCACAAGGCTTTATTGTCACTTTGAGGTGCGACATG
GATGACCCTGGGGCGACCGCGGCTGGGCAAGGGAGCAGCGGCAGGGAGGC
CCATGCCAAAGGTGGGGGGGCCAAGGAGTTGACAAAAGAGCAGCTGCTTG
GCTACATCAAGAAGCTGAAACAAAAGGTCAAGGAGGTGGAAAACGAATTG
CAAGAAAGCAAGGCCCAGCATGCCGCGTTACAATCTGGCCATCTGGAACT
GGAGGAGCGCGCCGCGGTCCTGGGGGAGAAGGATCGGTCCGCGGACGATC
GTCTCATCCAAGCTGCTGAGGATATGCATCGGGTCCACACAGAGGCGGAA
GGACGGGAGAAAGTCCTGCAAGCGCGCGTCGCAGAGTTAGAGCACGAAAT
CGAGGCGGCCAGGCGCACTCAGGACGGACAGATCGAGCAGGCAGAGCGGG
CGAAGAGGGCGGAGGGGGAGCTTCGTCGAGCGCAGGAGCGGATCGCATTT
TTGGAGGCCGCGCATGATACACGCGCGCCAGGGCCATTGCCCTCAGCCAC
CCCAAATTCCGAAAGCGATGACAAGGAGCAAGTGGCGCGACTGCAGGAGG
AAAAGGAAGAGATGCAGCTGAAGCTGAAGCTGATGGTGGACCGGTACAAA
ACATTGCAGGCCAAAGCCAAGTCGGTCGTGGAGGAGAAAGCGTGCGTCCT
CCAACAGCTGGAGGCCCTTCAAGCCGCCACAGCCGAGTCAGAAAAGCAGG
CGGCTGGTTGCCTTGCCTCGATAAAAGAGGACTTCAGGCAAGAGAAGGAG
CGTCTTGCAGCCGAGATCGCCACCCTGAGCGCGGCTTCAGAGGAGGCACA
GAACGAGTCCGAATCCCAGGCGCAGATGCTTGCCGATTTGCGGGTGGAGA
CAGAGCGTATGCGGAGTGAGCAAGCCGAGTTGACGACGGAACTGGTGTCG
TTACGGGAGAAGGCGCGAGCTCGGGAGGAGGAAGCGGCCGGGGGGTCGTG
GGAAGCCTCGGAGGAGGCCGCCGCCTTGCGTTCGAGGGTGGAGGCTCTGG
AAACGGCACGTGGGGATTGGCAAACGAGGCACGAAGACGCGATGTCCGAA
TTCAAGAAAGAAAAGGAGGCGCTGGCAGCTCGGAACGCTGCCCTCGCGCA
GCAGTTGGAAGGGCGGGACAGCGAAATTGAGAGGCTCACAAAGGAAGCGC
AGGCCTCGACAAAGGCCGTGCAAGGGCTGCAGGCTGAGCTGGAAAATGCT
AAGGGAAAGCTTGCGGCCCTTGAGGAAGCCCGCGCTTCGGAAGGGTCTGC
CATGTCCTCGGGTGATGGTGACATGGCCGCGATGGACGTGACCAAGGCCG
CGCTGGAGGAGGAGAAAGCCACGCTGCAGGAGCGGCTGGAAGGGGCGGAG
AAGGAGCTCGATTCGCTTCGCGCGCAAATGGAAAGTCTGCAGTCGGAGGG
AGAGGCCAAGGTGATGAGTCTGCGCCAAGAGCTTGCCGGGGCGGAAGAGG
CGCGGGCCGAGGTCCAGGGGCGCGTCGAGGCCTTGGAAGCCCAGCGGAAG
GAGCAGGATGAGACGGTGAAGCGCCTTAAAACGTTGCTGTCCAAGTCACG
GAGCATCATTCAGTCCCGAGACCAAGAGATCAGCAAAAGTAAAGCGGCCG
CGGAGGCGCTGGCCGCTCCCCCCGCCTCCTTCCAAGTGGCCATGCGCGTG
CGTACGGATTCGAGTGACGGTGGACCGGCCGGAACCGTTTGGTGCCTTGT
GGTGACCCCACCGTCCCCGCCCATCCAGCCGGCGCCAGCCTCCTCACAGG
ACCTCTGTGGCCTCTCCCCGTCCTCCCCTGGGGACCCCTCAGTGTCGGAT
CCCGCCCCTCCACCCGCGTCCCAGTGGGTGGCGGAGGAGAAAGCCCTTGC
CTGGACCCGGGAGGCGCTGGCAAGGGTGCCAGGGAGCGTGTTGGAGGTCA
ATGACTGGCCGGTGGTGCTTCAGGAGGGCTGGGCGCAGAGGGAGAGCTCG
CTTCGGTCGGCGATGGAGGAGGAGGTGGCGGGGAGACGGGCGGTGGAGGA
GGAGTTTCACAGGTACCGGGGCCGCGCCCACGCTGCCCTGAAAAAAGCAA
CGGAGCGAAGCGGGGAGGAGAGGCAGCGGGACCGGGCCCTGGAAGAGGAG
AAGCTTCGCCTGGCGGAGGAGCGGGCAGCATTGGAGCGGACGGTGATGTC
GTTGGAGGAGGAGCTGACGCAGGCGCGGGCCGATCTGGAGGAGACACGAG
AGGCGATGCAGGCGCGACTCGAGATGGTAGAGCATGCGTGCGAGAAGGCA
GTGAAAGAGGAGGCGGAACGAGGGTCCCGCTTGCTTGAGGAGGCAGCGGG
AGAGGCAGACAGGCGCTTGCGAGAAACGGTGGCGGAGTGGACCCAGCGAG
TGGAAGCGCAGGATCGGGAGGGAGACGCCCTGGAGGAGAAGATTGCCGAG
CTGGAGGGGCAGTTACAGGCGGCGCAGACAGCCGTCCTGGCCGCCAGGGA
TGCAGCAAAAGCCGCCGTGACCGCAGGTGCCTCGACTAAGGGGGCGGAAC
GGCAAAAAGGCGCCGTGACCGCAGGTGCCTCGACTAAGGGGGCGGAACGG
CCCAGGGACGGCACCCCCTCGGAGCTACCCGCGCCGGGATCCTTCTGCCA
TCAGGACAAGGGGGCTTTCACGTCCTTGCCCGCGGCCTCTGAGCAGGACC
GGGGTCACCGGCAGGCGATCGACGGTGATACGGACGGGCTCGGGCAGGGC
AGCTCCAATCTAAGTAGAGGGCGTACGCTGGCCCCTCTGAAGATACCGCC
CCCACCCCTGTCGCCGTCGGACGCAGAAAGTAGCAGCGGGGTCGGAGAAG
GCGATGCTGTGGGACTGGGCGAGCACTACGTGGTGATCAAGCAGCTGACG
GGCGACTTCCAGAAAGAGCGGGTCAGGGACCTCCAACTCATCGCGCACAT
GCAAGAAGAAATCACCGAATTGAATGCAAAACAGGCGCGGTTGCAAGAGC
AAGAAAGGGGTCTTAAGGCGGCCTTACAGAAGGCAGAAGATAGCTTGGCG
CGCGAGAGGGAATTGCATGCGGGGCCGGTAAACGCCGAGTATTTGAAGCA
TGCCATCTACGGCTTTTTGACAGCACACACGGACACAGAGCGGCAGACCT
TGCTCTCAGTCATCGTGACGATGCTGCATTTTAGTCCCGAGGAGGCGGCG
AAAGCAAAAGCTGCCACGCAGGCTAAGGGTGGACTGAGAGCGGGAGTAAC
AGGATGGATCACTGCCAAGCTTGGTGCTGGAGGTAGCGGCAGTGGAGAAA
GCGATCAAGGCGGGTGTGATGGAGACAGCGCGCGGTAGAGAGAAGGAATG
GATAGAAACACTGATAGAATGCAGACATTTTTGCTGAAATTTGTTTTCCG
AGTTCCTCCTCCAGCCCCTGACATACAAGAGCGATACGATTACCAGTGCG
CGTACTCGAGCTCCAATTACGATACATATCTTCGCTTAGTTGGCTTTGTT
GTTAGATTTGTCTCTTGACATTTATACATTACGTAAACAACAAGGAACTC
CACTCAGGCCTTTGCCTCTTTTGA

protein sequence of rna1892

>rna1892-protein ID=rna1892-protein|Name=rna1892|organism=Nannochloropsis gaditana|type=polypeptide|length=222bp
MGSVQRLTALILGPPGGGKGTISKKLLKDFNFLHLSTGDVLRRHVRDQTA
VGKAAQTYMIRGALVPDNVIVDLVVAELASKGHVPRLLLDGFPRTIPQAL
ALEPHVSIDVVIDLDIPDQTIIERISNRWIHAASGRTYAYDYNPPKQKGV
DDVTGEPLVQREDDKEETVKARLEQYKQITTPLVDHYRYQGTLATFSGTE
SDVIYPYVKAHLDAFLAGRSQE

mRNA from alignment at CM002458.1:408468..409813+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1892 ID=rna1892|Name=rna1892|organism=Nannochloropsis gaditana|type=mRNA|length=1346bp|location=Sequence derived from alignment at CM002458.1:408468..409813+ (Nannochloropsis gaditana)
AGTCTGCAATCTCTCGCGTCACAGATTCGCTAAGCATACATTGTCGAGTG
CTGAGCTGATGGGAAGCGTGCAGCGCTTGACTGCCCTCATTTTGGGTCcg
ccgggcgggggaaaaggaacaaTCTCCAAAAAACTCTTGAAAGACTTCAA
TTTCTTGCATCTGTCTACCGGAGACGTGTTGCGGAGGCATGTACGGGATC
AAACAGCTGTTGGTAAAGCTGCACAAACTTACATGATAAGAGGTACGTAC
GCAATGTTGTGAAGGCGAGCGGGCATGATCACAGTCGGAATAAGAGATGG
AAACCGGGGCGGGAGTTTCTCAGTTTCTGCATGTTGTCGAAGGTGTCGGG
GGATAAAGATGCCATGAGGTGCATGTAGGCAAGAGGAGTCATGGAGATCC
ATTTTTTTCGCACTGTACAACTGATTGGACTCCTTTGATTTGACTTGCAA
GGCGCGCTGGTCCCAGATAATGTCATCGTCGACCTGGTAGTTGCAGAGCT
CGCGTCCAAAGGTCACgtgcctcgcctcctcctcgacggtTTCCCACGCA
CTATTCCTCAAGCCCTGGCTCTCGAACCTCATGTTAGCATAGATGTAGTC
ATTGACCTTGACATACCGGACCAGACGATCATAGAACGCATATCGAATCG
GTGGATTCACGCCGCGTCTGGTCGCACATATGCCTACGACTATAACCCTC
CAAAGCAGAAAGGCGTCGATGACGTGACAGGCGAGCCCCTTGTTcagagg
gaagacgacaaggaagagacgGTTAAGGCTCGTCTGGAACAGTACAAGCA
AATAACAACGCCGTTGGTTGATCATTATCGCTACCAGGGCACCCTGGCGA
CGTTCTCAGGGACCGAGTCGGACGTGATTTACCCCTACGTCAAGGCGCAT
TTGGATGCATTTTTGGCTGGACGTAGCCAGGAATGAGGTCGAAGTGGGTG
GCAGACAATAGTGCGCGTATAGCGTAAAGGTGCTTGCGGCTACTAGTTCG
AAAAAGGGGACGGGCAAAGTAAGTTTTTTTATTGGGCGATCCTGTGAAGA
CAAATTTGGCtacagggaaaaagggattACTTTCTGTTGCTATCTTTTTC
CGTTCCTCCGCGTGGAGACAGGTCGGTAGCTTGCCTCACCCAATGACTCG
TGCCAGTCGCGAAGTAAAAAAAATAGGGAGTAAAGCAGGTTTAGGAGGCG
ACATGTTCTGACAATTCGATCCTGACGGCTTGTCGTCCAAAAGATAGCCA
AAAGATTCGCGCATTTGAGTCTCTGATACCCTGTGCACCTTTCTTGCCTT
CGCTTTTTTGGGCGCGCACCCTGAAGCCCCacgaaaaaggaagaca

Coding sequence (CDS) from alignment at CM002458.1:408468..409813+

>rna1892 ID=rna1892|Name=rna1892|organism=Nannochloropsis gaditana|type=CDS|length=1338bp|location=Sequence derived from alignment at CM002458.1:408468..409813+ (Nannochloropsis gaditana)
ATGGGAAGCGTGCAGCGCTTGACTGCCCTCATTTTGGGTCcgccgggcgg
gggaaaaggaacaaTCTCCAAAAAACTCTTGAAAGACTTCAATTTCTTGC
ATCTGTCTACCGGAGACGTGTTGCGGAGGCATGTACGGGATCAAACAGCT
GTTGGTAAAGCTGCACAAACTTACATGATAAGAGGCGCGCTGGTCCCAGA
TAATGTCATCGTCGACCTGGTAGTTGCAGAGCTCGCGTCCAAAGGTCACg
tgcctcgcctcctcctcgacggtTTCCCACGCACTATTCCTCAAGCCCTG
GCTCTCGAACCTCATGTTAGCATAGATGTAGTCATTGACCTTGACATACC
GGACCAGACGATCATAGAACGCATATCGAATCGGTGGATTCACGCCGCGT
CTGGTCGCACATATGCCTACGACTATAACCCTCCAAAGCAGAAAGGCGTC
GATGACGTGACAGGCGAGCCCCTTGTTcagagggaagacgacaaggaaga
gacgGTTAAGGCTCGTCTGGAACAGTACAAGCAAATAACAACGCCGTTGG
TTGATCATTATCGCTACCAGGGCACCCTGGCGACGTTCTCAGGGACCGAG
TCGGACGTGATTTACCCCTACGTCAAGGCGCATTTGGATGCATTTTTGGC
TGGACGTAGCCAGGAATGAATGGGAAGCGTGCAGCGCTTGACTGCCCTCA
TTTTGGGTCcgccgggcgggggaaaaggaacaaTCTCCAAAAAACTCTTG
AAAGACTTCAATTTCTTGCATCTGTCTACCGGAGACGTGTTGCGGAGGCA
TGTACGGGATCAAACAGCTGTTGGTAAAGCTGCACAAACTTACATGATAA
GAGGCGCGCTGGTCCCAGATAATGTCATCGTCGACCTGGTAGTTGCAGAG
CTCGCGTCCAAAGGTCACgtgcctcgcctcctcctcgacggtTTCCCACG
CACTATTCCTCAAGCCCTGGCTCTCGAACCTCATGTTAGCATAGATGTAG
TCATTGACCTTGACATACCGGACCAGACGATCATAGAACGCATATCGAAT
CGGTGGATTCACGCCGCGTCTGGTCGCACATATGCCTACGACTATAACCC
TCCAAAGCAGAAAGGCGTCGATGACGTGACAGGCGAGCCCCTTGTTcaga
gggaagacgacaaggaagagacgGTTAAGGCTCGTCTGGAACAGTACAAG
CAAATAACAACGCCGTTGGTTGATCATTATCGCTACCAGGGCACCCTGGC
GACGTTCTCAGGGACCGAGTCGGACGTGATTTACCCCTACGTCAAGGCGC
ATTTGGATGCATTTTTGGCTGGACGTAGCCAGGAATGA

Synonyms

Publications